Wall clock time and date at job start Tue Mar 31 2020 15:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21311 * 119.99594 * 2 1 4 4 C 1.46746 * 120.00285 * 179.97438 * 2 1 3 5 5 C 1.40006 * 120.23428 * 4.90785 * 4 2 1 6 6 C 1.37665 * 119.89745 * 180.02562 * 5 4 2 7 7 C 1.38655 * 120.37222 * 359.72659 * 6 5 4 8 8 C 1.37996 * 120.47787 * 0.55568 * 7 6 5 9 9 C 1.38876 * 120.08922 * 359.44616 * 8 7 6 10 10 N 1.39064 * 120.18184 * 180.25497 * 9 8 7 11 11 C 1.34771 * 119.99943 * 324.62873 * 10 9 8 12 12 O 1.21598 * 120.00269 * 4.47569 * 11 10 9 13 13 C 1.47389 * 119.99617 * 184.46897 * 11 10 9 14 14 C 1.41307 * 126.41812 * 359.68957 * 13 11 10 15 15 N 1.30452 * 108.02072 * 179.85471 * 14 13 11 16 16 N 1.39933 * 108.90638 * 0.41212 * 15 14 13 17 17 C 1.46487 * 125.75519 * 179.77257 * 16 15 14 18 18 C 1.50701 * 109.47325 * 269.95615 * 17 16 15 19 19 H 1.07999 * 119.99582 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00073 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99481 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00130 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47076 * 89.99560 * 22 20 18 24 24 H 1.48499 * 109.47114 * 210.00038 * 22 20 18 25 25 H 1.48504 * 109.47042 * 329.99742 * 22 20 18 26 26 C 1.34265 * 108.49408 * 359.73536 * 16 15 14 27 27 C 1.50699 * 126.29469 * 179.97438 * 26 16 15 28 28 H 1.09004 * 109.47445 * 239.99917 * 1 2 3 29 29 H 1.08996 * 109.48023 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46750 * 120.00774 * 1 2 3 31 31 H 1.08002 * 120.04653 * 0.02562 * 5 4 2 32 32 H 1.08001 * 119.81215 * 180.02562 * 6 5 4 33 33 H 1.08007 * 119.76063 * 180.27395 * 7 6 5 34 34 H 1.08002 * 119.95908 * 179.72167 * 8 7 6 35 35 H 0.96999 * 119.99363 * 144.63978 * 10 9 8 36 36 H 1.07996 * 125.98967 * 359.97438 * 14 13 11 37 37 H 1.09003 * 109.47060 * 29.95612 * 17 16 15 38 38 H 1.08995 * 109.47622 * 149.95358 * 17 16 15 39 39 H 0.97001 * 119.99455 * 180.02562 * 21 20 18 40 40 H 1.09003 * 109.46962 * 270.01468 * 27 26 16 41 41 H 1.09001 * 109.47152 * 30.01278 * 27 26 16 42 42 H 1.08997 * 109.47732 * 150.01521 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0506 0.0000 4 6 2.2407 -1.2708 0.0006 5 6 1.5496 -2.4840 -0.1024 6 6 2.2449 -3.6722 -0.1006 7 6 3.6280 -3.6749 -0.0031 8 6 4.3244 -2.4885 0.1049 9 6 3.6427 -1.2785 0.1051 10 7 4.3429 -0.0815 0.2085 11 6 5.4509 -0.0129 0.9728 12 8 5.8845 -1.0157 1.5064 13 6 6.1369 1.2779 1.1616 14 6 5.7571 2.5193 0.6037 15 7 6.6104 3.4204 1.0057 16 7 7.5684 2.8063 1.8202 17 6 8.7002 3.4765 2.4648 18 6 9.8931 3.4455 1.5444 19 1 9.8156 2.9740 0.5758 20 6 11.0830 4.0198 1.9384 21 7 12.1241 3.9922 1.1352 22 14 11.2168 4.8359 3.6133 23 1 11.6543 3.8341 4.6185 24 1 12.2094 5.9386 3.5489 25 1 9.8931 5.3838 4.0042 26 6 7.2747 1.4994 1.9119 27 6 8.0455 0.4644 2.6901 28 1 -0.3634 -0.5139 0.8900 29 1 -0.3635 1.0276 -0.0005 30 1 -0.3633 -0.5140 -0.8900 31 1 0.4726 -2.4877 -0.1830 32 1 1.7104 -4.6072 -0.1805 33 1 4.1639 -4.6126 -0.0071 34 1 5.4014 -2.5006 0.1850 35 1 4.0338 0.7039 -0.2693 36 1 4.9080 2.6922 -0.0409 37 1 8.4347 4.5114 2.6807 38 1 8.9452 2.9629 3.3944 39 1 12.9613 4.3960 1.4125 40 1 8.8127 0.0265 2.0514 41 1 8.5165 0.9350 3.5531 42 1 7.3651 -0.3170 3.0285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887636318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:58 Heat of formation + Delta-G solvation = 30.586315 kcal Electronic energy + Delta-G solvation = -26853.827046 eV Core-core repulsion = 22993.778643 eV Total energy + Delta-G solvation = -3860.048403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.17296 -40.53260 -38.97880 -37.95964 -34.76770 -33.89734 -32.26642 -32.21000 -31.41453 -29.98920 -29.50404 -27.76420 -26.76498 -24.05480 -23.64718 -22.75562 -21.69446 -20.40136 -19.82225 -19.05054 -17.58125 -17.25200 -17.17991 -16.72088 -15.85799 -15.41983 -15.09387 -15.01898 -14.92388 -14.53618 -14.42564 -14.20538 -13.92504 -13.61000 -13.37109 -12.85800 -12.75747 -12.59479 -12.57238 -12.39793 -12.31221 -12.19754 -12.10319 -11.76174 -11.59772 -11.23946 -10.85283 -10.56451 -10.40488 -10.27403 -9.89782 -9.80286 -9.51277 -9.15747 -8.85937 -8.67859 -8.34853 -7.96706 -6.33942 -4.38763 0.42468 1.14601 2.05569 2.19456 2.69645 2.97269 3.10350 3.17818 3.19779 3.39589 3.52842 3.80609 3.84408 4.14917 4.53180 4.75343 4.78988 4.88516 4.93627 5.03187 5.06237 5.11263 5.20095 5.24894 5.30802 5.45300 5.59758 5.67285 5.70896 5.84354 5.98831 6.00682 6.11687 6.23440 6.27866 6.36046 6.42713 6.48183 6.56703 6.84173 6.99221 7.16943 7.25922 7.51670 7.57818 8.18588 8.23908 8.37251 8.69178 9.19833 10.78283 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.023130 B = 0.002760 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.239738 B =10140.895067 C =10908.409102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.398 3.602 3 O -0.463 6.463 4 C -0.217 4.217 5 C -0.054 4.054 6 C -0.160 4.160 7 C -0.066 4.066 8 C -0.140 4.140 9 C 0.225 3.775 10 N -0.666 5.666 11 C 0.605 3.395 12 O -0.537 6.537 13 C -0.332 4.332 14 C 0.069 3.931 15 N -0.290 5.290 16 N -0.312 5.312 17 C 0.224 3.776 18 C -0.546 4.546 19 H 0.082 0.918 20 C 0.082 3.918 21 N -0.883 5.883 22 Si 0.872 3.128 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.263 1.263 26 C 0.174 3.826 27 C -0.095 4.095 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.149 0.851 35 H 0.421 0.579 36 H 0.181 0.819 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.270 0.730 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.511 -14.109 -1.255 26.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.278 3.722 3 O -0.340 6.340 4 C -0.221 4.221 5 C -0.073 4.073 6 C -0.179 4.179 7 C -0.085 4.085 8 C -0.161 4.161 9 C 0.126 3.874 10 N -0.313 5.313 11 C 0.398 3.602 12 O -0.415 6.415 13 C -0.348 4.348 14 C -0.119 4.119 15 N -0.109 5.109 16 N -0.088 5.088 17 C 0.105 3.895 18 C -0.584 4.584 19 H 0.100 0.900 20 C -0.123 4.123 21 N -0.519 5.519 22 Si 0.698 3.302 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.188 1.188 26 C 0.036 3.964 27 C -0.153 4.153 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.166 0.834 35 H 0.264 0.736 36 H 0.197 0.803 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.167 -12.705 -0.854 24.702 hybrid contribution -0.196 -0.016 0.471 0.510 sum -21.363 -12.721 -0.384 24.867 Atomic orbital electron populations 1.22208 0.93550 1.05214 1.04419 1.22338 0.91827 0.87277 0.70783 1.90420 1.71617 1.34468 1.37501 1.20306 0.92234 0.95638 1.13912 1.21184 0.99645 0.90892 0.95569 1.21039 0.94430 0.98007 1.04379 1.21326 0.94238 0.98025 0.94895 1.21461 1.02067 0.90607 1.01940 1.17983 0.89375 0.86907 0.93098 1.43633 1.26977 1.12400 1.48332 1.17449 0.78344 0.87877 0.76523 1.90680 1.65089 1.36551 1.49156 1.19487 1.04356 0.94114 1.16798 1.23844 0.98610 0.90141 0.99312 1.77186 1.01054 1.22133 1.10554 1.48938 1.20640 1.05027 1.34228 1.20173 0.81865 0.94096 0.93322 1.21086 0.93191 1.39999 1.04102 0.89998 1.24789 0.95147 0.94998 0.97401 1.69864 1.02098 1.43584 1.36345 0.86904 0.79004 0.80115 0.84168 1.19483 1.20328 1.18762 1.21466 0.93249 0.86618 0.95038 1.20616 0.99871 0.95801 0.99014 0.88872 0.89626 0.88859 0.84994 0.85543 0.85321 0.83357 0.73613 0.80252 0.92629 0.93368 0.91950 0.89299 0.90952 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.14 8.99 36.00 0.32 -0.82 16 2 C 0.40 4.02 7.20 -30.88 -0.22 3.80 16 3 O -0.46 -6.12 14.64 5.53 0.08 -6.03 16 4 C -0.22 -2.29 5.88 -104.91 -0.62 -2.90 16 5 C -0.05 -0.41 9.46 -39.13 -0.37 -0.78 16 6 C -0.16 -1.21 10.02 -39.64 -0.40 -1.61 16 7 C -0.07 -0.61 10.03 -39.52 -0.40 -1.01 16 8 C -0.14 -1.75 8.67 -39.43 -0.34 -2.10 16 9 C 0.22 2.96 6.30 -83.46 -0.53 2.44 16 10 N -0.67 -9.78 4.66 -10.63 -0.05 -9.83 16 11 C 0.61 10.45 7.65 -12.54 -0.10 10.35 16 12 O -0.54 -9.84 12.28 5.28 0.06 -9.77 16 13 C -0.33 -6.27 6.13 -105.07 -0.64 -6.91 16 14 C 0.07 1.27 11.51 -16.97 -0.20 1.07 16 15 N -0.29 -6.35 12.50 30.86 0.39 -5.97 16 16 N -0.31 -7.01 3.56 -57.77 -0.21 -7.22 16 17 C 0.22 5.26 5.03 -5.20 -0.03 5.24 16 18 C -0.55 -15.01 9.94 -34.44 -0.34 -15.35 16 19 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 20 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 21 N -0.88 -25.90 13.96 55.43 0.77 -25.13 16 22 Si 0.87 19.82 27.47 -169.99 -4.67 15.15 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 26 C 0.17 3.52 7.01 -81.59 -0.57 2.95 16 27 C -0.09 -1.66 9.57 36.01 0.34 -1.32 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 30 H 0.09 0.34 7.94 -51.93 -0.41 -0.07 16 31 H 0.13 0.56 7.01 -52.49 -0.37 0.20 16 32 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.15 2.09 6.24 -52.49 -0.33 1.76 16 35 H 0.42 5.88 5.31 -40.82 -0.22 5.66 16 36 H 0.18 2.65 7.51 -52.49 -0.39 2.26 16 37 H 0.06 1.31 7.20 -51.93 -0.37 0.94 16 38 H 0.05 1.04 6.44 -51.93 -0.33 0.70 16 39 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.07 1.19 7.05 -51.93 -0.37 0.82 16 42 H 0.09 1.57 6.50 -51.93 -0.34 1.23 16 LS Contribution 356.76 15.07 5.38 5.38 Total: -1.00 -33.22 356.76 -7.25 -40.47 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -4.83 Total: 7.76 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -4.18 Total: -4.81 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.90 Total: -48.14 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.15 Total: -15.81 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.67 Total: 15.15 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.22 -7.25 -40.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887636318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.061 kcal (2) G-P(sol) polarization free energy of solvation -33.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds