Wall clock time and date at job start Tue Mar 31 2020 15:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21311 * 119.99594 * 2 1 4 4 C 1.46746 * 120.00285 * 179.97438 * 2 1 3 5 5 C 1.40006 * 120.23428 * 4.90785 * 4 2 1 6 6 C 1.37665 * 119.89745 * 180.02562 * 5 4 2 7 7 C 1.38655 * 120.37222 * 359.72659 * 6 5 4 8 8 C 1.37996 * 120.47787 * 0.55568 * 7 6 5 9 9 C 1.38876 * 120.08922 * 359.44616 * 8 7 6 10 10 N 1.39064 * 120.18184 * 180.25497 * 9 8 7 11 11 C 1.34771 * 119.99943 * 324.62873 * 10 9 8 12 12 O 1.21598 * 120.00269 * 4.47569 * 11 10 9 13 13 C 1.47389 * 119.99617 * 184.46897 * 11 10 9 14 14 C 1.41307 * 126.41812 * 359.68957 * 13 11 10 15 15 N 1.30452 * 108.02072 * 179.85471 * 14 13 11 16 16 N 1.39933 * 108.90638 * 0.41212 * 15 14 13 17 17 C 1.46487 * 125.75519 * 179.77257 * 16 15 14 18 18 C 1.50701 * 109.47325 * 269.95615 * 17 16 15 19 19 H 1.07999 * 119.99582 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00073 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99481 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00130 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47076 * 89.99560 * 22 20 18 24 24 H 1.48499 * 109.47114 * 210.00038 * 22 20 18 25 25 H 1.48504 * 109.47042 * 329.99742 * 22 20 18 26 26 C 1.34265 * 108.49408 * 359.73536 * 16 15 14 27 27 C 1.50699 * 126.29469 * 179.97438 * 26 16 15 28 28 H 1.09004 * 109.47445 * 239.99917 * 1 2 3 29 29 H 1.08996 * 109.48023 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46750 * 120.00774 * 1 2 3 31 31 H 1.08002 * 120.04653 * 0.02562 * 5 4 2 32 32 H 1.08001 * 119.81215 * 180.02562 * 6 5 4 33 33 H 1.08007 * 119.76063 * 180.27395 * 7 6 5 34 34 H 1.08002 * 119.95908 * 179.72167 * 8 7 6 35 35 H 0.96999 * 119.99363 * 144.63978 * 10 9 8 36 36 H 1.07996 * 125.98967 * 359.97438 * 14 13 11 37 37 H 1.09003 * 109.47060 * 29.95612 * 17 16 15 38 38 H 1.08995 * 109.47622 * 149.95358 * 17 16 15 39 39 H 0.97001 * 119.99455 * 180.02562 * 21 20 18 40 40 H 1.09003 * 109.46962 * 270.01468 * 27 26 16 41 41 H 1.09001 * 109.47152 * 30.01278 * 27 26 16 42 42 H 1.08997 * 109.47732 * 150.01521 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0506 0.0000 4 6 2.2407 -1.2708 0.0006 5 6 1.5496 -2.4840 -0.1024 6 6 2.2449 -3.6722 -0.1006 7 6 3.6280 -3.6749 -0.0031 8 6 4.3244 -2.4885 0.1049 9 6 3.6427 -1.2785 0.1051 10 7 4.3429 -0.0815 0.2085 11 6 5.4509 -0.0129 0.9728 12 8 5.8845 -1.0157 1.5064 13 6 6.1369 1.2779 1.1616 14 6 5.7571 2.5193 0.6037 15 7 6.6104 3.4204 1.0057 16 7 7.5684 2.8063 1.8202 17 6 8.7002 3.4765 2.4648 18 6 9.8931 3.4455 1.5444 19 1 9.8156 2.9740 0.5758 20 6 11.0830 4.0198 1.9384 21 7 12.1241 3.9922 1.1352 22 14 11.2168 4.8359 3.6133 23 1 11.6543 3.8341 4.6185 24 1 12.2094 5.9386 3.5489 25 1 9.8931 5.3838 4.0042 26 6 7.2747 1.4994 1.9119 27 6 8.0455 0.4644 2.6901 28 1 -0.3634 -0.5139 0.8900 29 1 -0.3635 1.0276 -0.0005 30 1 -0.3633 -0.5140 -0.8900 31 1 0.4726 -2.4877 -0.1830 32 1 1.7104 -4.6072 -0.1805 33 1 4.1639 -4.6126 -0.0071 34 1 5.4014 -2.5006 0.1850 35 1 4.0338 0.7039 -0.2693 36 1 4.9080 2.6922 -0.0409 37 1 8.4347 4.5114 2.6807 38 1 8.9452 2.9629 3.3944 39 1 12.9613 4.3960 1.4125 40 1 8.8127 0.0265 2.0514 41 1 8.5165 0.9350 3.5531 42 1 7.3651 -0.3170 3.0285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887636318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:58 Heat of formation + Delta-G solvation = 8.986095 kcal Electronic energy + Delta-G solvation = -26854.763702 eV Core-core repulsion = 22993.778643 eV Total energy + Delta-G solvation = -3860.985059 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.56466 -41.62725 -40.05318 -38.84045 -35.97309 -35.70841 -34.04534 -33.05157 -32.91503 -31.03137 -30.14844 -29.44237 -28.23163 -25.25926 -24.74038 -24.24989 -22.89196 -21.32006 -21.14248 -20.45538 -19.31983 -18.73345 -18.34970 -17.53287 -16.98690 -16.79260 -16.38656 -16.14568 -15.97714 -15.88311 -15.58974 -15.28504 -15.15928 -14.82228 -14.60997 -14.45079 -14.22349 -13.86357 -13.77232 -13.62530 -13.21460 -13.10938 -13.06205 -12.94170 -12.85576 -12.58535 -12.47372 -12.19094 -11.87934 -11.83670 -11.49624 -10.95994 -10.93703 -10.57122 -10.35927 -9.93725 -9.70526 -9.12272 -8.45603 -6.58214 -0.35526 0.28527 0.63614 1.18166 1.31970 1.33116 1.43290 1.46821 1.53195 2.13440 2.22723 2.32498 2.86515 2.88013 3.14509 3.55732 3.61624 3.85130 3.94280 4.08094 4.15059 4.22402 4.32188 4.38487 4.40903 4.50696 4.54018 4.64357 4.65984 4.69628 4.73849 4.97380 5.01947 5.04133 5.13675 5.16699 5.29680 5.35893 5.47542 5.51179 5.56942 5.76934 6.01306 6.15328 6.35944 6.44510 6.56252 6.66570 7.05607 7.09136 8.70970 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.023130 B = 0.002760 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.239738 B =10140.895067 C =10908.409102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.392 3.608 3 O -0.505 6.505 4 C -0.224 4.224 5 C -0.040 4.040 6 C -0.148 4.148 7 C -0.067 4.067 8 C -0.166 4.166 9 C 0.183 3.817 10 N -0.658 5.658 11 C 0.604 3.396 12 O -0.553 6.553 13 C -0.335 4.335 14 C 0.082 3.918 15 N -0.328 5.328 16 N -0.334 5.334 17 C 0.232 3.768 18 C -0.555 4.555 19 H 0.026 0.974 20 C 0.024 3.976 21 N -0.934 5.934 22 Si 0.950 3.050 23 H -0.250 1.250 24 H -0.277 1.277 25 H -0.243 1.243 26 C 0.158 3.842 27 C -0.089 4.089 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.178 0.822 32 H 0.166 0.834 33 H 0.149 0.851 34 H 0.120 0.880 35 H 0.422 0.578 36 H 0.213 0.787 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.275 0.725 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.167 -15.796 0.031 30.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.275 3.725 3 O -0.384 6.384 4 C -0.227 4.227 5 C -0.058 4.058 6 C -0.166 4.166 7 C -0.085 4.085 8 C -0.186 4.186 9 C 0.086 3.914 10 N -0.306 5.306 11 C 0.396 3.604 12 O -0.433 6.433 13 C -0.350 4.350 14 C -0.106 4.106 15 N -0.147 5.147 16 N -0.111 5.111 17 C 0.113 3.887 18 C -0.593 4.593 19 H 0.044 0.956 20 C -0.176 4.176 21 N -0.572 5.572 22 Si 0.770 3.230 23 H -0.174 1.174 24 H -0.202 1.202 25 H -0.167 1.167 26 C 0.022 3.978 27 C -0.147 4.147 28 H 0.134 0.866 29 H 0.100 0.900 30 H 0.141 0.859 31 H 0.195 0.805 32 H 0.184 0.816 33 H 0.166 0.834 34 H 0.138 0.862 35 H 0.265 0.735 36 H 0.229 0.771 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -24.885 -14.441 0.409 28.775 hybrid contribution 0.776 0.299 -0.115 0.840 sum -24.109 -14.141 0.294 27.952 Atomic orbital electron populations 1.22249 0.89696 1.05906 1.06788 1.23044 0.93904 0.86390 0.69161 1.90402 1.72788 1.35692 1.39567 1.20621 0.91143 0.97402 1.13583 1.21719 1.01744 0.89430 0.92921 1.21533 0.93554 0.99722 1.01798 1.21630 0.95544 0.97501 0.93864 1.21376 1.01096 0.92003 1.04129 1.18338 0.90812 0.86189 0.96033 1.43438 1.26164 1.13369 1.47642 1.17266 0.79111 0.86978 0.77062 1.90660 1.65802 1.36704 1.50145 1.19807 1.04059 0.95099 1.16053 1.24361 0.98412 0.89446 0.98355 1.77114 1.02103 1.23619 1.11870 1.48828 1.21005 1.05773 1.35490 1.19960 0.80725 0.94792 0.93220 1.21167 0.95524 1.39848 1.02796 0.95590 1.25822 0.94213 0.95311 1.02274 1.70025 1.03041 1.45019 1.39137 0.85694 0.79863 0.79174 0.78242 1.17396 1.20172 1.16673 1.22000 0.93937 0.86364 0.95517 1.20644 0.99668 0.95422 0.98978 0.86598 0.90011 0.85856 0.80519 0.81622 0.83350 0.86181 0.73496 0.77073 0.92464 0.90757 0.91565 0.89937 0.89652 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.48 8.99 71.23 0.64 -0.84 16 2 C 0.39 7.21 7.20 27.91 0.20 7.41 16 3 O -0.50 -13.20 14.64 -3.13 -0.05 -13.24 16 4 C -0.22 -4.27 5.88 -20.05 -0.12 -4.39 16 5 C -0.04 -0.43 9.46 22.56 0.21 -0.22 16 6 C -0.15 -1.60 10.02 22.23 0.22 -1.37 16 7 C -0.07 -1.11 10.03 22.31 0.22 -0.89 16 8 C -0.17 -4.20 8.67 22.36 0.19 -4.00 16 9 C 0.18 4.83 6.30 38.72 0.24 5.08 16 10 N -0.66 -20.02 4.66 -305.81 -1.42 -21.44 16 11 C 0.60 21.72 7.65 86.65 0.66 22.39 16 12 O -0.55 -21.19 12.28 -4.02 -0.05 -21.24 16 13 C -0.34 -13.09 6.13 -20.15 -0.12 -13.21 16 14 C 0.08 3.10 11.51 85.65 0.99 4.09 16 15 N -0.33 -14.82 12.50 -56.26 -0.70 -15.52 16 16 N -0.33 -15.47 3.56 -336.70 -1.20 -16.67 16 17 C 0.23 11.04 5.03 85.64 0.43 11.47 16 18 C -0.56 -31.86 9.94 25.60 0.25 -31.60 16 19 H 0.03 1.73 8.06 -2.91 -0.02 1.70 16 20 C 0.02 1.35 5.47 84.66 0.46 1.82 16 21 N -0.93 -56.86 13.96 21.45 0.30 -56.57 16 22 Si 0.95 40.68 27.47 68.60 1.88 42.56 16 23 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 24 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 25 H -0.24 -9.60 6.54 99.48 0.65 -8.95 16 26 C 0.16 6.61 7.01 42.15 0.30 6.91 16 27 C -0.09 -3.20 9.57 71.24 0.68 -2.52 16 28 H 0.12 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.08 0.75 8.12 -2.39 -0.02 0.74 16 30 H 0.12 0.25 7.94 -2.39 -0.02 0.23 16 31 H 0.18 0.32 7.01 -2.91 -0.02 0.30 16 32 H 0.17 0.58 8.06 -2.91 -0.02 0.55 16 33 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.12 3.65 6.24 -2.91 -0.02 3.63 16 35 H 0.42 12.21 5.31 -92.71 -0.49 11.71 16 36 H 0.21 6.31 7.51 -2.91 -0.02 6.29 16 37 H 0.06 2.68 7.20 -2.39 -0.02 2.67 16 38 H 0.07 3.12 6.44 -2.39 -0.02 3.10 16 39 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 41 H 0.08 2.78 7.05 -2.39 -0.02 2.76 16 42 H 0.10 3.53 6.50 -2.39 -0.02 3.51 16 Total: -1.00 -78.93 356.76 4.76 -74.17 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: 0.53 Total: 27.83 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 5.47 Total: 0.12 kcal Atomic # 7 Polarization: -107.17 SS G_CDS: -3.03 Total: -110.20 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -0.10 Total: -34.48 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 1.88 Total: 42.56 kcal Total: -78.93 4.76 -74.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887636318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.151 kcal (2) G-P(sol) polarization free energy of solvation -78.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds