Wall clock time and date at job start Tue Mar 31 2020 15:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38054 * 126.29212 * 2 1 4 4 C 1.47416 * 126.41404 * 0.02562 * 3 2 1 5 5 O 1.21610 * 119.99996 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99670 * 180.02562 * 4 3 2 7 7 C 1.40064 * 119.99996 * 175.35626 * 6 4 3 8 8 C 1.38874 * 120.19448 * 214.78161 * 7 6 4 9 9 C 1.37864 * 120.28041 * 179.97438 * 8 7 6 10 10 C 1.39301 * 120.32964 * 0.56160 * 9 8 7 11 11 C 1.38890 * 118.99544 * 359.39978 * 10 9 8 12 12 C 1.37692 * 120.85071 * 0.42716 * 11 10 9 13 13 C 1.51658 * 107.04630 * 180.68673 * 11 10 9 14 14 C 1.54706 * 101.93212 * 15.48651 * 13 11 10 15 15 O 1.36237 * 129.79305 * 179.09007 * 10 9 8 16 16 C 1.41293 * 107.17156 * 179.97438 * 3 2 1 17 17 N 1.30454 * 108.01953 * 359.71692 * 16 3 2 18 18 N 1.34263 * 126.29252 * 179.97438 * 2 1 3 19 19 C 1.46502 * 125.75686 * 0.02835 * 18 2 1 20 20 C 1.50702 * 109.47285 * 89.99575 * 19 18 2 21 21 H 1.07999 * 119.99671 * 359.97438 * 20 19 18 22 22 C 1.37871 * 119.99629 * 179.72934 * 20 19 18 23 23 N 1.31513 * 120.00364 * 0.27030 * 22 20 19 24 24 Si 1.86797 * 119.99978 * 180.27294 * 22 20 19 25 25 H 1.48500 * 109.46966 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47459 * 119.99527 * 24 22 20 27 27 H 1.48500 * 109.47482 * 239.99715 * 24 22 20 28 28 H 1.08996 * 109.47059 * 270.02616 * 1 2 3 29 29 H 1.09006 * 109.47043 * 30.02288 * 1 2 3 30 30 H 1.08998 * 109.46985 * 150.02788 * 1 2 3 31 31 H 0.97005 * 120.00603 * 355.35634 * 6 4 3 32 32 H 1.08001 * 119.86244 * 0.17756 * 8 7 6 33 33 H 1.07990 * 119.84082 * 180.27856 * 9 8 7 34 34 H 1.08008 * 120.03599 * 179.77052 * 12 11 10 35 35 H 1.08991 * 110.94065 * 133.64963 * 13 11 10 36 36 H 1.08998 * 110.93669 * 257.29745 * 13 11 10 37 37 H 1.09005 * 110.74360 * 92.98410 * 14 13 11 38 38 H 1.08995 * 110.75012 * 216.15289 * 14 13 11 39 39 H 1.07990 * 125.99090 * 179.97438 * 16 3 2 40 40 H 1.09005 * 109.46558 * 329.99341 * 19 18 2 41 41 H 1.08996 * 109.47163 * 209.99736 * 19 18 2 42 42 H 0.96998 * 120.00292 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1127 0.0000 4 6 1.8859 2.5203 0.0005 5 8 0.6996 2.7877 0.0006 6 7 2.8001 3.5106 -0.0001 7 6 2.3866 4.8452 -0.0978 8 6 3.1608 5.7674 -0.7898 9 6 2.7553 7.0814 -0.8875 10 6 1.5716 7.4990 -0.2834 11 6 0.8032 6.5698 0.4058 12 6 1.2029 5.2557 0.5027 13 6 -0.4155 7.3033 0.9319 14 6 -0.3874 8.6076 0.1005 15 8 1.0027 8.7363 -0.2429 16 6 3.6591 0.6499 0.0006 17 7 3.6341 -0.6544 0.0071 18 7 2.3017 -1.0822 0.0005 19 6 1.8502 -2.4759 0.0005 20 6 1.6959 -2.9540 -1.4203 21 1 1.9120 -2.2863 -2.2412 22 6 1.2835 -4.2453 -1.6721 23 7 1.0198 -5.0581 -0.6724 24 14 1.0995 -4.8404 -3.4331 25 1 1.4540 -3.7412 -4.3666 26 1 2.0037 -5.9959 -3.6623 27 1 -0.3059 -5.2569 -3.6706 28 1 -0.3633 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 3.7444 3.2991 0.0672 32 1 4.0829 5.4531 -1.2562 33 1 3.3605 7.7915 -1.4312 34 1 0.5970 4.5449 1.0450 35 1 -1.3257 6.7365 0.7367 36 1 -0.3125 7.5167 1.9958 37 1 -0.9990 8.5071 -0.7963 38 1 -0.7200 9.4550 0.7000 39 1 4.5450 1.2676 0.0004 40 1 0.8914 -2.5471 0.5141 41 1 2.5847 -3.0957 0.5147 42 1 0.7301 -5.9667 -0.8496 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887947252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:36 Heat of formation + Delta-G solvation = 29.638776 kcal Electronic energy + Delta-G solvation = -26402.403893 eV Core-core repulsion = 22542.314401 eV Total energy + Delta-G solvation = -3860.089492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.30123 -40.86361 -39.47240 -37.22774 -34.35479 -33.86572 -32.80912 -32.12861 -31.27458 -29.48665 -29.15526 -27.25981 -26.66972 -24.07205 -23.50439 -22.70188 -22.02887 -21.47098 -19.92012 -19.17003 -17.63675 -17.57736 -16.94932 -16.75381 -16.49878 -16.05510 -15.25206 -14.97252 -14.53408 -14.31664 -14.23804 -14.13327 -13.66448 -13.39400 -13.30210 -13.13068 -12.82488 -12.65678 -12.54199 -12.51913 -12.12938 -11.96107 -11.84497 -11.55195 -11.40543 -11.15248 -10.97699 -10.94934 -10.40578 -10.25475 -9.96432 -9.83570 -9.48780 -8.95111 -8.75641 -8.66375 -8.10947 -7.69935 -6.37796 -4.45985 1.10212 1.25582 2.08816 2.69720 2.96517 3.14463 3.14745 3.22824 3.28384 3.45025 3.52684 3.84642 4.21045 4.23584 4.40217 4.74287 4.79094 4.94013 5.00569 5.01588 5.09797 5.15140 5.19804 5.41849 5.46321 5.53865 5.57347 5.68090 5.74925 5.81237 5.93119 6.02732 6.23324 6.27674 6.32488 6.44347 6.51358 6.68760 6.71712 6.84572 7.07137 7.09795 7.50650 7.53815 7.71195 7.72724 8.28443 8.41298 8.60055 9.21475 10.70404 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024282 B = 0.002333 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.833022 B =12000.807897 C =12270.647259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.171 3.829 3 C -0.335 4.335 4 C 0.605 3.395 5 O -0.539 6.539 6 N -0.674 5.674 7 C 0.134 3.866 8 C -0.115 4.115 9 C -0.119 4.119 10 C 0.080 3.920 11 C -0.156 4.156 12 C -0.072 4.072 13 C -0.110 4.110 14 C 0.052 3.948 15 O -0.308 6.308 16 C 0.059 3.941 17 N -0.293 5.293 18 N -0.312 5.312 19 C 0.250 3.750 20 C -0.541 4.541 21 H 0.066 0.934 22 C 0.067 3.933 23 N -0.889 5.889 24 Si 0.908 3.092 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.279 1.279 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.410 0.590 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.145 0.855 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.177 0.823 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.135 22.870 3.207 23.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.033 3.967 3 C -0.351 4.351 4 C 0.397 3.603 5 O -0.417 6.417 6 N -0.319 5.319 7 C 0.039 3.961 8 C -0.136 4.136 9 C -0.138 4.138 10 C 0.035 3.965 11 C -0.158 4.158 12 C -0.092 4.092 13 C -0.147 4.147 14 C -0.023 4.023 15 O -0.223 6.223 16 C -0.128 4.128 17 N -0.113 5.113 18 N -0.089 5.089 19 C 0.133 3.867 20 C -0.579 4.579 21 H 0.084 0.916 22 C -0.137 4.137 23 N -0.526 5.526 24 Si 0.735 3.265 25 H -0.195 1.195 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.246 0.754 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.162 0.838 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.122 0.878 39 H 0.194 0.806 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.010 21.726 3.217 21.963 hybrid contribution -0.061 0.006 -0.870 0.872 sum -0.050 21.732 2.347 21.859 Atomic orbital electron populations 1.20639 0.86736 1.04992 1.03365 1.21482 0.95004 0.86437 0.93774 1.19538 0.93334 0.91951 1.30228 1.17411 0.84895 0.83895 0.74063 1.90684 1.16610 1.84003 1.50363 1.43261 1.10799 1.03386 1.74412 1.17504 0.95888 0.83984 0.98708 1.20625 1.01150 0.92199 0.99591 1.19955 0.95925 0.95636 1.02259 1.19521 0.95393 0.84261 0.97346 1.20612 0.98676 0.94284 1.02188 1.20449 0.96411 0.93908 0.98453 1.21782 0.97118 0.95063 1.00755 1.23796 0.81004 0.98437 0.99029 1.86812 1.23474 1.25221 1.86770 1.23743 0.96252 0.92691 1.00144 1.77160 0.98637 1.12201 1.23271 1.49414 1.02462 1.08368 1.48640 1.19889 0.96479 0.70793 0.99536 1.21284 1.47608 0.98085 0.90969 0.91568 1.24926 0.94398 0.95984 0.98350 1.69918 1.44499 1.07099 1.31096 0.86266 0.77994 0.78880 0.83382 1.19498 1.20533 1.20518 0.90379 0.88578 0.89759 0.75441 0.84765 0.85238 0.83764 0.88875 0.89170 0.90646 0.87773 0.80624 0.92488 0.92403 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.72 9.34 36.01 0.34 -1.39 16 2 C 0.17 3.35 7.01 -81.60 -0.57 2.78 16 3 C -0.34 -5.84 6.13 -105.07 -0.64 -6.48 16 4 C 0.60 9.61 7.66 -12.52 -0.10 9.51 16 5 O -0.54 -9.63 12.29 5.27 0.06 -9.57 16 6 N -0.67 -8.30 5.34 -10.78 -0.06 -8.36 16 7 C 0.13 1.66 6.31 -83.60 -0.53 1.14 16 8 C -0.12 -1.19 9.94 -39.48 -0.39 -1.58 16 9 C -0.12 -1.25 10.06 -39.32 -0.40 -1.65 16 10 C 0.08 0.95 7.04 -38.94 -0.27 0.67 16 11 C -0.16 -1.85 6.26 -104.11 -0.65 -2.50 16 12 C -0.07 -0.95 8.69 -39.52 -0.34 -1.30 16 13 C -0.11 -0.95 7.12 -26.51 -0.19 -1.14 16 14 C 0.05 0.41 8.01 38.06 0.30 0.71 16 15 O -0.31 -3.45 11.11 -20.50 -0.23 -3.68 16 16 C 0.06 0.98 11.51 -16.98 -0.20 0.78 16 17 N -0.29 -6.09 12.50 30.86 0.39 -5.71 16 18 N -0.31 -6.86 3.56 -57.77 -0.21 -7.06 16 19 C 0.25 6.09 5.78 -5.19 -0.03 6.06 16 20 C -0.54 -14.32 9.39 -34.44 -0.32 -14.65 16 21 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 22 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -24.24 13.29 55.43 0.74 -23.50 16 24 Si 0.91 20.56 29.54 -169.99 -5.02 15.54 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.10 1.63 6.50 -51.93 -0.34 1.30 16 30 H 0.08 1.53 7.70 -51.93 -0.40 1.13 16 31 H 0.41 3.79 7.79 -40.82 -0.32 3.47 16 32 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.14 2.09 6.23 -52.48 -0.33 1.77 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.18 2.00 7.51 -52.49 -0.39 1.61 16 40 H 0.06 1.37 7.62 -51.93 -0.40 0.98 16 41 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 359.06 15.07 5.41 5.41 Total: -1.00 -31.46 359.06 -8.10 -39.56 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.10 Total: 4.72 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -4.09 Total: -7.36 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.86 Total: -44.63 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.16 Total: -13.24 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.46 -8.10 -39.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887947252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.199 kcal (2) G-P(sol) polarization free energy of solvation -31.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds