Wall clock time and date at job start Tue Mar 31 2020 15:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38054 * 126.29212 * 2 1 4 4 C 1.47416 * 126.41404 * 0.02562 * 3 2 1 5 5 O 1.21610 * 119.99996 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99670 * 180.02562 * 4 3 2 7 7 C 1.40064 * 119.99996 * 175.35626 * 6 4 3 8 8 C 1.38874 * 120.19448 * 214.78161 * 7 6 4 9 9 C 1.37864 * 120.28041 * 179.97438 * 8 7 6 10 10 C 1.39301 * 120.32964 * 0.56160 * 9 8 7 11 11 C 1.38890 * 118.99544 * 359.39978 * 10 9 8 12 12 C 1.37692 * 120.85071 * 0.42716 * 11 10 9 13 13 C 1.51658 * 107.04630 * 180.68673 * 11 10 9 14 14 C 1.54706 * 101.93212 * 15.48651 * 13 11 10 15 15 O 1.36237 * 129.79305 * 179.09007 * 10 9 8 16 16 C 1.41293 * 107.17156 * 179.97438 * 3 2 1 17 17 N 1.30454 * 108.01953 * 359.71692 * 16 3 2 18 18 N 1.34263 * 126.29252 * 179.97438 * 2 1 3 19 19 C 1.46502 * 125.75686 * 0.02835 * 18 2 1 20 20 C 1.50702 * 109.47285 * 89.99575 * 19 18 2 21 21 H 1.07999 * 119.99671 * 359.97438 * 20 19 18 22 22 C 1.37871 * 119.99629 * 179.72934 * 20 19 18 23 23 N 1.31513 * 120.00364 * 0.27030 * 22 20 19 24 24 Si 1.86797 * 119.99978 * 180.27294 * 22 20 19 25 25 H 1.48500 * 109.46966 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47459 * 119.99527 * 24 22 20 27 27 H 1.48500 * 109.47482 * 239.99715 * 24 22 20 28 28 H 1.08996 * 109.47059 * 270.02616 * 1 2 3 29 29 H 1.09006 * 109.47043 * 30.02288 * 1 2 3 30 30 H 1.08998 * 109.46985 * 150.02788 * 1 2 3 31 31 H 0.97005 * 120.00603 * 355.35634 * 6 4 3 32 32 H 1.08001 * 119.86244 * 0.17756 * 8 7 6 33 33 H 1.07990 * 119.84082 * 180.27856 * 9 8 7 34 34 H 1.08008 * 120.03599 * 179.77052 * 12 11 10 35 35 H 1.08991 * 110.94065 * 133.64963 * 13 11 10 36 36 H 1.08998 * 110.93669 * 257.29745 * 13 11 10 37 37 H 1.09005 * 110.74360 * 92.98410 * 14 13 11 38 38 H 1.08995 * 110.75012 * 216.15289 * 14 13 11 39 39 H 1.07990 * 125.99090 * 179.97438 * 16 3 2 40 40 H 1.09005 * 109.46558 * 329.99341 * 19 18 2 41 41 H 1.08996 * 109.47163 * 209.99736 * 19 18 2 42 42 H 0.96998 * 120.00292 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1127 0.0000 4 6 1.8859 2.5203 0.0005 5 8 0.6996 2.7877 0.0006 6 7 2.8001 3.5106 -0.0001 7 6 2.3866 4.8452 -0.0978 8 6 3.1608 5.7674 -0.7898 9 6 2.7553 7.0814 -0.8875 10 6 1.5716 7.4990 -0.2834 11 6 0.8032 6.5698 0.4058 12 6 1.2029 5.2557 0.5027 13 6 -0.4155 7.3033 0.9319 14 6 -0.3874 8.6076 0.1005 15 8 1.0027 8.7363 -0.2429 16 6 3.6591 0.6499 0.0006 17 7 3.6341 -0.6544 0.0071 18 7 2.3017 -1.0822 0.0005 19 6 1.8502 -2.4759 0.0005 20 6 1.6959 -2.9540 -1.4203 21 1 1.9120 -2.2863 -2.2412 22 6 1.2835 -4.2453 -1.6721 23 7 1.0198 -5.0581 -0.6724 24 14 1.0995 -4.8404 -3.4331 25 1 1.4540 -3.7412 -4.3666 26 1 2.0037 -5.9959 -3.6623 27 1 -0.3059 -5.2569 -3.6706 28 1 -0.3633 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 3.7444 3.2991 0.0672 32 1 4.0829 5.4531 -1.2562 33 1 3.3605 7.7915 -1.4312 34 1 0.5970 4.5449 1.0450 35 1 -1.3257 6.7365 0.7367 36 1 -0.3125 7.5167 1.9958 37 1 -0.9990 8.5071 -0.7963 38 1 -0.7200 9.4550 0.7000 39 1 4.5450 1.2676 0.0004 40 1 0.8914 -2.5471 0.5141 41 1 2.5847 -3.0957 0.5147 42 1 0.7301 -5.9667 -0.8496 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887947252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:35 Heat of formation + Delta-G solvation = 10.213727 kcal Electronic energy + Delta-G solvation = -26403.246226 eV Core-core repulsion = 22542.314401 eV Total energy + Delta-G solvation = -3860.931825 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.43431 -41.99273 -40.61002 -38.21717 -35.86295 -35.31154 -33.81660 -33.56229 -32.79646 -30.44400 -30.08775 -28.91513 -28.09419 -25.49987 -24.74132 -23.78455 -22.95981 -22.49463 -21.22883 -20.60221 -18.89552 -18.76010 -18.39735 -17.95138 -17.38710 -16.90169 -16.75902 -16.47198 -16.09289 -15.62989 -15.48056 -15.10504 -14.87199 -14.54609 -14.34825 -14.15552 -14.04907 -13.89846 -13.69156 -13.62551 -13.57352 -13.39176 -13.10281 -12.95702 -12.73403 -12.62236 -12.34227 -12.20029 -11.89222 -11.84553 -11.66942 -10.85818 -10.77513 -10.68468 -10.28244 -9.82128 -9.57002 -8.63946 -8.39039 -6.55487 0.19304 0.36334 0.70994 1.30310 1.35709 1.38444 1.48979 1.62012 2.15464 2.31849 2.36244 2.48869 2.79581 2.93167 3.48270 3.67792 3.71996 3.78368 3.98514 4.07458 4.16863 4.19683 4.25460 4.33778 4.49834 4.57075 4.64496 4.72985 4.78137 4.78841 4.88514 4.89705 4.93685 5.05520 5.10793 5.15176 5.36945 5.42448 5.44666 5.48323 5.64439 5.73584 5.76800 6.01895 6.24833 6.51243 6.53939 6.82146 7.15917 7.23983 8.68911 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024282 B = 0.002333 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.833022 B =12000.807897 C =12270.647259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.151 3.849 3 C -0.331 4.331 4 C 0.607 3.393 5 O -0.562 6.562 6 N -0.655 5.655 7 C 0.113 3.887 8 C -0.104 4.104 9 C -0.122 4.122 10 C 0.070 3.930 11 C -0.171 4.171 12 C -0.091 4.091 13 C -0.111 4.111 14 C 0.050 3.950 15 O -0.322 6.322 16 C 0.082 3.918 17 N -0.335 5.335 18 N -0.338 5.338 19 C 0.267 3.733 20 C -0.555 4.555 21 H 0.052 0.948 22 C 0.024 3.976 23 N -0.916 5.916 24 Si 0.971 3.029 25 H -0.273 1.273 26 H -0.273 1.273 27 H -0.269 1.269 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.426 0.574 32 H 0.166 0.834 33 H 0.153 0.847 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.133 0.867 39 H 0.230 0.770 40 H 0.051 0.949 41 H 0.033 0.967 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.936 25.172 2.270 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.014 3.986 3 C -0.346 4.346 4 C 0.398 3.602 5 O -0.442 6.442 6 N -0.300 5.300 7 C 0.019 3.981 8 C -0.124 4.124 9 C -0.141 4.141 10 C 0.024 3.976 11 C -0.172 4.172 12 C -0.112 4.112 13 C -0.148 4.148 14 C -0.024 4.024 15 O -0.236 6.236 16 C -0.105 4.105 17 N -0.155 5.155 18 N -0.114 5.114 19 C 0.148 3.852 20 C -0.593 4.593 21 H 0.070 0.930 22 C -0.178 4.178 23 N -0.554 5.554 24 Si 0.795 3.205 25 H -0.197 1.197 26 H -0.199 1.199 27 H -0.194 1.194 28 H 0.111 0.889 29 H 0.118 0.882 30 H 0.089 0.911 31 H 0.265 0.735 32 H 0.183 0.817 33 H 0.170 0.830 34 H 0.142 0.858 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.151 0.849 39 H 0.247 0.753 40 H 0.069 0.931 41 H 0.051 0.949 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.833 24.065 2.290 24.189 hybrid contribution -0.297 -0.502 -0.532 0.789 sum 0.536 23.563 1.759 23.635 Atomic orbital electron populations 1.20605 0.85855 1.04325 1.04162 1.21963 0.95953 0.86668 0.93975 1.19769 0.93493 0.92345 1.28998 1.17206 0.84992 0.83810 0.74208 1.90682 1.17776 1.84230 1.51505 1.42975 1.11052 1.02854 1.73149 1.17682 0.96408 0.84024 0.99950 1.20909 1.01572 0.91546 0.98340 1.20326 0.95705 0.96193 1.01844 1.19827 0.95884 0.84498 0.97380 1.20908 0.99970 0.93970 1.02376 1.20415 0.97023 0.94308 0.99433 1.21887 0.96166 0.95238 1.01521 1.24060 0.79637 0.99011 0.99716 1.86791 1.25050 1.24990 1.86813 1.24569 0.97604 0.91621 0.96720 1.77113 0.98280 1.14444 1.25612 1.49126 1.03414 1.07773 1.51134 1.19382 0.95343 0.72317 0.98143 1.21417 1.47963 0.98356 0.91557 0.93018 1.25720 0.93840 0.95974 1.02223 1.69996 1.44921 1.07539 1.32964 0.85304 0.78439 0.78201 0.78543 1.19718 1.19850 1.19390 0.88899 0.88240 0.91144 0.73536 0.81688 0.82963 0.85785 0.88378 0.88101 0.89842 0.84927 0.75346 0.93123 0.94936 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.26 9.34 71.24 0.67 -2.59 16 2 C 0.15 5.99 7.01 42.14 0.30 6.28 16 3 C -0.33 -11.23 6.13 -20.15 -0.12 -11.35 16 4 C 0.61 18.59 7.66 86.66 0.66 19.25 16 5 O -0.56 -20.03 12.29 -4.06 -0.05 -20.08 16 6 N -0.65 -14.71 5.34 -306.27 -1.63 -16.34 16 7 C 0.11 2.62 6.31 38.14 0.24 2.86 16 8 C -0.10 -1.84 9.94 22.33 0.22 -1.62 16 9 C -0.12 -2.25 10.06 22.44 0.23 -2.03 16 10 C 0.07 1.52 7.04 22.68 0.16 1.68 16 11 C -0.17 -3.90 6.26 -19.53 -0.12 -4.02 16 12 C -0.09 -2.38 8.69 22.31 0.19 -2.19 16 13 C -0.11 -1.79 7.12 30.74 0.22 -1.57 16 14 C 0.05 0.68 8.01 72.56 0.58 1.26 16 15 O -0.32 -6.57 11.11 -96.25 -1.07 -7.64 16 16 C 0.08 2.56 11.51 85.65 0.99 3.54 16 17 N -0.34 -13.92 12.50 -56.28 -0.70 -14.63 16 18 N -0.34 -15.22 3.56 -336.68 -1.20 -16.42 16 19 C 0.27 13.56 5.78 85.63 0.50 14.06 16 20 C -0.55 -30.23 9.39 25.60 0.24 -29.99 16 21 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 22 C 0.02 1.28 5.46 84.65 0.46 1.74 16 23 N -0.92 -50.80 13.29 21.44 0.28 -50.52 16 24 Si 0.97 42.34 29.54 68.60 2.03 44.37 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 28 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 29 H 0.10 3.45 6.50 -2.38 -0.02 3.43 16 30 H 0.07 2.67 7.70 -2.39 -0.02 2.65 16 31 H 0.43 6.45 7.79 -92.70 -0.72 5.73 16 32 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 33 H 0.15 2.07 8.06 -2.92 -0.02 2.05 16 34 H 0.12 3.69 6.23 -2.91 -0.02 3.67 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.23 4.27 7.51 -2.92 -0.02 4.25 16 40 H 0.05 2.58 7.62 -2.38 -0.02 2.56 16 41 H 0.03 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -70.01 359.06 3.41 -66.60 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.35 Total: 19.33 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 5.40 Total: -4.67 kcal Atomic # 7 Polarization: -94.66 SS G_CDS: -3.25 Total: -97.91 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -1.12 Total: -27.72 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -70.01 3.41 -66.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887947252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.814 kcal (2) G-P(sol) polarization free energy of solvation -70.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds