Wall clock time and date at job start Tue Mar 31 2020 14:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46492 * 110.43896 * 2 1 4 4 C 1.34779 * 119.99984 * 298.75810 * 3 2 1 5 5 O 1.21669 * 119.99877 * 4.86875 * 4 3 2 6 6 C 1.46890 * 120.00056 * 184.87257 * 4 3 2 7 7 C 1.36122 * 125.43141 * 174.71218 * 6 4 3 8 8 C 1.41708 * 107.74340 * 179.97438 * 7 6 4 9 9 C 1.40016 * 133.34651 * 180.02562 * 8 7 6 10 10 C 1.36582 * 119.83246 * 179.97438 * 9 8 7 11 11 C 1.38856 * 120.59487 * 0.02562 * 10 9 8 12 12 C 1.37840 * 120.63548 * 359.97438 * 11 10 9 13 13 C 1.39085 * 119.81540 * 359.97438 * 12 11 10 14 14 N 1.37837 * 133.16945 * 180.02562 * 13 12 11 15 15 C 1.36895 * 125.61678 * 359.97438 * 14 13 12 16 16 H 1.08001 * 120.00229 * 134.56809 * 15 14 13 17 17 C 1.39009 * 119.99932 * 314.56630 * 15 14 13 18 18 N 1.31352 * 120.00281 * 349.56517 * 17 15 14 19 19 Si 1.86804 * 120.00137 * 169.56922 * 17 15 14 20 20 H 1.48498 * 109.47416 * 94.97955 * 19 17 15 21 21 H 1.48496 * 109.46987 * 214.98049 * 19 17 15 22 22 H 1.48502 * 109.46930 * 334.97824 * 19 17 15 23 23 C 1.54634 * 110.48522 * 122.54468 * 2 1 3 24 24 C 1.54476 * 101.76880 * 94.01029 * 23 2 1 25 25 N 1.46763 * 105.47039 * 25.41538 * 24 23 2 26 26 C 1.34417 * 111.30518 * 342.98260 * 25 24 23 27 27 O 1.21281 * 124.93966 * 180.44338 * 26 25 24 28 28 H 1.09001 * 109.46543 * 59.30007 * 1 2 3 29 29 H 1.09002 * 109.47138 * 179.30078 * 1 2 3 30 30 H 1.08994 * 109.47205 * 299.30308 * 1 2 3 31 31 H 0.96997 * 120.00160 * 118.75427 * 3 2 1 32 32 H 1.07997 * 126.13372 * 0.02562 * 7 6 4 33 33 H 1.08003 * 120.08573 * 359.93018 * 9 8 7 34 34 H 1.07994 * 119.69971 * 180.02562 * 10 9 8 35 35 H 1.08000 * 119.67965 * 180.02562 * 11 10 9 36 36 H 1.08003 * 120.09237 * 179.72516 * 12 11 10 37 37 H 0.96998 * 120.00297 * 175.06925 * 18 17 15 38 38 H 1.08999 * 110.96518 * 212.13122 * 23 2 1 39 39 H 1.09003 * 110.96735 * 335.84981 * 23 2 1 40 40 H 1.09004 * 110.24689 * 144.41694 * 24 23 2 41 41 H 1.09000 * 110.24196 * 266.41422 * 24 23 2 42 42 H 0.97009 * 124.34322 * 162.98613 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0416 1.3727 0.0000 4 6 1.7507 2.2003 -1.0233 5 8 0.9917 1.8374 -1.9023 6 6 2.3499 3.5403 -1.0773 7 6 2.2156 4.4240 -2.1039 8 6 2.9430 5.5923 -1.7660 9 6 3.1633 6.8102 -2.4206 10 6 3.9302 7.7718 -1.8267 11 6 4.4956 7.5532 -0.5775 12 6 4.2931 6.3623 0.0865 13 6 3.5149 5.3685 -0.4977 14 7 3.1391 4.1055 -0.0935 15 6 3.4910 3.5085 1.0871 16 1 2.7459 2.9928 1.6747 17 6 4.8076 3.5661 1.5296 18 7 5.7507 4.0085 0.7296 19 14 5.2356 3.0142 3.2622 20 1 5.6792 1.5972 3.2350 21 1 6.3289 3.8650 3.7968 22 1 4.0388 3.1416 4.1321 23 6 2.0712 -0.7793 1.2211 24 6 2.2805 -2.1898 0.6271 25 7 2.4802 -1.9829 -0.8120 26 6 2.0622 -0.7634 -1.1927 27 8 2.1050 -0.3374 -2.3275 28 1 -0.3632 0.5247 -0.8837 29 1 -0.3633 -1.0276 -0.0125 30 1 -0.3633 0.5029 0.8961 31 1 2.5896 1.6861 0.7364 32 1 1.6545 4.2640 -3.0126 33 1 2.7284 6.9887 -3.3930 34 1 4.0983 8.7106 -2.3333 35 1 5.0992 8.3239 -0.1214 36 1 4.7407 6.1999 1.0559 37 1 6.6562 4.1163 1.0602 38 1 3.0151 -0.3572 1.5660 39 1 1.3376 -0.7996 2.0271 40 1 3.1615 -2.6573 1.0669 41 1 1.3989 -2.8068 0.8008 42 1 2.8644 -2.6417 -1.4115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889038234.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:25 Heat of formation + Delta-G solvation = -0.088707 kcal Electronic energy + Delta-G solvation = -28587.229605 eV Core-core repulsion = 24725.851033 eV Total energy + Delta-G solvation = -3861.378572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.84589 -40.20144 -37.98890 -36.27294 -35.89195 -34.26810 -33.50116 -30.99466 -30.62827 -28.95637 -28.61600 -27.78267 -25.25958 -25.03950 -23.07020 -22.01374 -20.99207 -20.41096 -19.31136 -18.92710 -18.18053 -17.20901 -16.34422 -16.03760 -15.71924 -15.61110 -14.86079 -14.65946 -14.26886 -14.14621 -13.82121 -13.72910 -13.45743 -13.04886 -12.92564 -12.81857 -12.52157 -12.45987 -12.23049 -12.07608 -11.89732 -11.83760 -11.70322 -11.40934 -11.24498 -11.03743 -10.78157 -10.66576 -10.18905 -9.79091 -9.76054 -9.28871 -9.09036 -9.00725 -8.61597 -8.37296 -7.20021 -6.84632 -6.54091 -4.72814 1.88711 2.73431 2.80719 2.89631 2.90527 2.94421 3.20552 3.39794 3.66072 3.81341 4.27304 4.33824 4.47103 4.58423 4.72417 4.84120 4.92190 5.08789 5.30918 5.34716 5.64496 5.65721 5.81302 5.84009 5.92070 5.95890 5.96949 6.18944 6.44986 6.47166 6.57819 6.71125 6.80747 6.84887 6.93701 7.07667 7.10916 7.12804 7.14044 7.48526 7.58747 7.64815 7.92378 7.96236 8.25220 8.30924 8.49899 8.68885 9.08833 9.28954 10.12333 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012860 B = 0.005319 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.801149 B = 5263.142823 C = 6876.022776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.146 3.854 3 N -0.718 5.718 4 C 0.596 3.404 5 O -0.523 6.523 6 C -0.011 4.011 7 C -0.163 4.163 8 C -0.133 4.133 9 C -0.084 4.084 10 C -0.163 4.163 11 C -0.144 4.144 12 C -0.061 4.061 13 C 0.109 3.891 14 N -0.263 5.263 15 C -0.378 4.378 16 H 0.105 0.895 17 C 0.060 3.940 18 N -0.814 5.814 19 Si 0.920 3.080 20 H -0.269 1.269 21 H -0.272 1.272 22 H -0.260 1.260 23 C -0.141 4.141 24 C 0.108 3.892 25 N -0.741 5.741 26 C 0.510 3.490 27 O -0.489 6.489 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.417 0.583 32 H 0.132 0.868 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.283 0.717 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.442 -7.877 6.039 10.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.055 3.945 3 N -0.381 5.381 4 C 0.385 3.615 5 O -0.399 6.399 6 C -0.125 4.125 7 C -0.191 4.191 8 C -0.138 4.138 9 C -0.102 4.102 10 C -0.182 4.182 11 C -0.164 4.164 12 C -0.081 4.081 13 C -0.006 4.006 14 N 0.072 4.928 15 C -0.505 4.505 16 H 0.123 0.877 17 C -0.155 4.155 18 N -0.442 5.442 19 Si 0.743 3.257 20 H -0.194 1.194 21 H -0.197 1.197 22 H -0.184 1.184 23 C -0.179 4.179 24 C -0.017 4.017 25 N -0.400 5.400 26 C 0.293 3.707 27 O -0.359 6.359 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.264 0.736 32 H 0.150 0.850 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -3.669 -8.053 5.159 10.243 hybrid contribution 1.093 -0.506 0.973 1.548 sum -2.576 -8.558 6.132 10.839 Atomic orbital electron populations 1.22068 0.91821 1.02301 1.04759 1.20832 0.95883 0.83997 0.93784 1.46630 1.55419 1.09745 1.26343 1.17242 0.80081 0.83158 0.80987 1.90741 1.35428 1.75608 1.38101 1.20188 1.05776 0.94391 0.92193 1.20412 1.06353 0.93323 0.99005 1.18041 1.03905 0.95564 0.96314 1.20077 0.99292 0.92376 0.98494 1.20260 1.02355 0.98868 0.96696 1.20565 1.02839 0.97006 0.96015 1.20008 0.97059 0.91239 0.99777 1.18238 1.00997 0.86178 0.95161 1.39887 1.32864 1.08080 1.11965 1.19417 0.94236 1.38756 0.98060 0.87738 1.25682 0.94894 0.95200 0.99681 1.69947 1.02419 1.37157 1.34639 0.86026 0.79471 0.79303 0.80870 1.19419 1.19680 1.18365 1.22996 1.03461 0.94349 0.97088 1.21963 1.01908 0.97103 0.80750 1.46194 1.65828 1.17554 1.10385 1.21129 0.77251 0.82056 0.90253 1.90827 1.53080 1.70722 1.21318 0.89265 0.92081 0.91356 0.73578 0.84968 0.87727 0.87910 0.87701 0.87046 0.90631 0.88971 0.88268 0.90188 0.90990 0.75454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.47 37.16 0.31 -1.87 16 2 C 0.15 2.33 0.89 -131.83 -0.12 2.22 16 3 N -0.72 -14.17 5.08 -48.84 -0.25 -14.42 16 4 C 0.60 14.02 6.99 -12.76 -0.09 13.93 16 5 O -0.52 -13.08 12.85 -17.01 -0.22 -13.30 16 6 C -0.01 -0.27 6.77 -82.25 -0.56 -0.83 16 7 C -0.16 -4.00 10.55 -39.02 -0.41 -4.41 16 8 C -0.13 -3.22 6.16 -106.89 -0.66 -3.88 16 9 C -0.08 -1.76 10.06 -39.51 -0.40 -2.15 16 10 C -0.16 -3.18 9.97 -39.95 -0.40 -3.58 16 11 C -0.14 -2.93 10.02 -39.50 -0.40 -3.33 16 12 C -0.06 -1.42 8.67 -39.41 -0.34 -1.76 16 13 C 0.11 2.74 6.04 -83.84 -0.51 2.24 16 14 N -0.26 -6.63 2.78 -56.08 -0.16 -6.78 16 15 C -0.38 -8.84 7.73 -15.01 -0.12 -8.96 16 16 H 0.11 2.24 6.35 -52.49 -0.33 1.91 16 17 C 0.06 1.36 4.69 -17.47 -0.08 1.28 16 18 N -0.81 -20.09 11.15 55.50 0.62 -19.47 16 19 Si 0.92 16.78 29.57 -169.99 -5.03 11.76 16 20 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 21 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 22 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 23 C -0.14 -1.55 6.32 -25.10 -0.16 -1.70 16 24 C 0.11 0.97 7.78 -3.12 -0.02 0.94 16 25 N -0.74 -9.35 6.24 -59.20 -0.37 -9.72 16 26 C 0.51 9.17 7.28 -10.86 -0.08 9.09 16 27 O -0.49 -11.35 15.45 -16.67 -0.26 -11.61 16 28 H 0.09 1.61 6.16 -51.93 -0.32 1.29 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.42 8.13 4.15 -40.82 -0.17 7.96 16 32 H 0.13 3.04 8.06 -52.49 -0.42 2.61 16 33 H 0.10 1.91 8.06 -52.48 -0.42 1.49 16 34 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.11 2.60 6.86 -52.48 -0.36 2.24 16 37 H 0.28 6.49 8.31 -40.82 -0.34 6.15 16 38 H 0.09 1.06 7.88 -51.93 -0.41 0.65 16 39 H 0.10 0.81 7.90 -51.93 -0.41 0.40 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.41 4.39 8.96 -40.82 -0.37 4.02 16 LS Contribution 344.19 15.07 5.19 5.19 Total: -1.00 -32.62 344.19 -9.37 -42.00 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: -4.88 Total: 19.15 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -4.02 Total: -2.78 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.15 Total: -50.39 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.48 Total: -24.91 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.03 Total: 11.76 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.62 -9.37 -42.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889038234.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.907 kcal (2) G-P(sol) polarization free energy of solvation -32.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds