Wall clock time and date at job start Tue Mar 31 2020 14:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46492 * 110.43896 * 2 1 4 4 C 1.34779 * 119.99984 * 298.75810 * 3 2 1 5 5 O 1.21669 * 119.99877 * 4.86875 * 4 3 2 6 6 C 1.46890 * 120.00056 * 184.87257 * 4 3 2 7 7 C 1.36122 * 125.43141 * 174.71218 * 6 4 3 8 8 C 1.41708 * 107.74340 * 179.97438 * 7 6 4 9 9 C 1.40016 * 133.34651 * 180.02562 * 8 7 6 10 10 C 1.36582 * 119.83246 * 179.97438 * 9 8 7 11 11 C 1.38856 * 120.59487 * 0.02562 * 10 9 8 12 12 C 1.37840 * 120.63548 * 359.97438 * 11 10 9 13 13 C 1.39085 * 119.81540 * 359.97438 * 12 11 10 14 14 N 1.37837 * 133.16945 * 180.02562 * 13 12 11 15 15 C 1.36895 * 125.61678 * 359.97438 * 14 13 12 16 16 H 1.08001 * 120.00229 * 134.56809 * 15 14 13 17 17 C 1.39009 * 119.99932 * 314.56630 * 15 14 13 18 18 N 1.31352 * 120.00281 * 349.56517 * 17 15 14 19 19 Si 1.86804 * 120.00137 * 169.56922 * 17 15 14 20 20 H 1.48498 * 109.47416 * 94.97955 * 19 17 15 21 21 H 1.48496 * 109.46987 * 214.98049 * 19 17 15 22 22 H 1.48502 * 109.46930 * 334.97824 * 19 17 15 23 23 C 1.54634 * 110.48522 * 122.54468 * 2 1 3 24 24 C 1.54476 * 101.76880 * 94.01029 * 23 2 1 25 25 N 1.46763 * 105.47039 * 25.41538 * 24 23 2 26 26 C 1.34417 * 111.30518 * 342.98260 * 25 24 23 27 27 O 1.21281 * 124.93966 * 180.44338 * 26 25 24 28 28 H 1.09001 * 109.46543 * 59.30007 * 1 2 3 29 29 H 1.09002 * 109.47138 * 179.30078 * 1 2 3 30 30 H 1.08994 * 109.47205 * 299.30308 * 1 2 3 31 31 H 0.96997 * 120.00160 * 118.75427 * 3 2 1 32 32 H 1.07997 * 126.13372 * 0.02562 * 7 6 4 33 33 H 1.08003 * 120.08573 * 359.93018 * 9 8 7 34 34 H 1.07994 * 119.69971 * 180.02562 * 10 9 8 35 35 H 1.08000 * 119.67965 * 180.02562 * 11 10 9 36 36 H 1.08003 * 120.09237 * 179.72516 * 12 11 10 37 37 H 0.96998 * 120.00297 * 175.06925 * 18 17 15 38 38 H 1.08999 * 110.96518 * 212.13122 * 23 2 1 39 39 H 1.09003 * 110.96735 * 335.84981 * 23 2 1 40 40 H 1.09004 * 110.24689 * 144.41694 * 24 23 2 41 41 H 1.09000 * 110.24196 * 266.41422 * 24 23 2 42 42 H 0.97009 * 124.34322 * 162.98613 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0416 1.3727 0.0000 4 6 1.7507 2.2003 -1.0233 5 8 0.9917 1.8374 -1.9023 6 6 2.3499 3.5403 -1.0773 7 6 2.2156 4.4240 -2.1039 8 6 2.9430 5.5923 -1.7660 9 6 3.1633 6.8102 -2.4206 10 6 3.9302 7.7718 -1.8267 11 6 4.4956 7.5532 -0.5775 12 6 4.2931 6.3623 0.0865 13 6 3.5149 5.3685 -0.4977 14 7 3.1391 4.1055 -0.0935 15 6 3.4910 3.5085 1.0871 16 1 2.7459 2.9928 1.6747 17 6 4.8076 3.5661 1.5296 18 7 5.7507 4.0085 0.7296 19 14 5.2356 3.0142 3.2622 20 1 5.6792 1.5972 3.2350 21 1 6.3289 3.8650 3.7968 22 1 4.0388 3.1416 4.1321 23 6 2.0712 -0.7793 1.2211 24 6 2.2805 -2.1898 0.6271 25 7 2.4802 -1.9829 -0.8120 26 6 2.0622 -0.7634 -1.1927 27 8 2.1050 -0.3374 -2.3275 28 1 -0.3632 0.5247 -0.8837 29 1 -0.3633 -1.0276 -0.0125 30 1 -0.3633 0.5029 0.8961 31 1 2.5896 1.6861 0.7364 32 1 1.6545 4.2640 -3.0126 33 1 2.7284 6.9887 -3.3930 34 1 4.0983 8.7106 -2.3333 35 1 5.0992 8.3239 -0.1214 36 1 4.7407 6.1999 1.0559 37 1 6.6562 4.1163 1.0602 38 1 3.0151 -0.3572 1.5660 39 1 1.3376 -0.7996 2.0271 40 1 3.1615 -2.6573 1.0669 41 1 1.3989 -2.8068 0.8008 42 1 2.8644 -2.6417 -1.4115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889038234.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:24 Heat of formation + Delta-G solvation = -22.165573 kcal Electronic energy + Delta-G solvation = -28588.186930 eV Core-core repulsion = 24725.851033 eV Total energy + Delta-G solvation = -3862.335897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.37168 -41.71608 -39.63014 -37.62947 -37.58978 -35.76762 -35.17452 -32.57849 -32.18740 -30.59603 -29.79931 -29.37051 -26.82848 -26.43256 -24.69540 -23.06228 -22.70367 -22.02831 -20.98281 -20.42110 -19.86568 -18.46792 -17.99119 -17.37157 -17.13641 -17.06033 -16.46363 -16.28068 -15.88862 -15.67097 -15.20453 -15.00915 -14.86796 -14.71422 -14.62276 -14.33216 -14.10706 -13.65960 -13.54589 -13.44735 -13.18458 -13.17374 -13.09293 -12.94084 -12.76708 -12.34016 -12.16351 -12.09685 -11.86645 -11.48030 -11.23730 -10.98334 -10.76583 -10.39621 -10.07075 -9.91944 -8.95024 -8.61996 -8.29655 -6.53910 0.12553 1.09598 1.35344 1.40263 1.44241 1.51907 1.56239 2.11096 2.21933 2.44333 2.56642 2.82389 2.91627 3.28335 3.34591 3.50521 3.90268 3.98728 4.06707 4.22484 4.41252 4.41835 4.53908 4.65232 4.68277 4.72379 4.76016 4.83278 4.96088 4.99553 5.01230 5.07066 5.19025 5.27773 5.33539 5.43637 5.52388 5.75361 5.86879 5.88751 5.94359 6.00714 6.18178 6.23902 6.56355 6.59337 6.91593 7.25053 7.38522 7.51000 8.41708 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012860 B = 0.005319 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.801149 B = 5263.142823 C = 6876.022776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.130 3.870 3 N -0.710 5.710 4 C 0.590 3.410 5 O -0.549 6.549 6 C -0.041 4.041 7 C -0.186 4.186 8 C -0.156 4.156 9 C -0.093 4.093 10 C -0.153 4.153 11 C -0.133 4.133 12 C -0.086 4.086 13 C 0.078 3.922 14 N -0.271 5.271 15 C -0.396 4.396 16 H 0.119 0.881 17 C 0.022 3.978 18 N -0.855 5.855 19 Si 0.993 3.007 20 H -0.255 1.255 21 H -0.276 1.276 22 H -0.245 1.245 23 C -0.134 4.134 24 C 0.106 3.894 25 N -0.725 5.725 26 C 0.494 3.506 27 O -0.560 6.560 28 H 0.044 0.956 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.418 0.582 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.147 0.853 35 H 0.140 0.860 36 H 0.102 0.898 37 H 0.285 0.715 38 H 0.087 0.913 39 H 0.137 0.863 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.951 -8.787 8.863 12.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.040 3.960 3 N -0.371 5.371 4 C 0.378 3.622 5 O -0.427 6.427 6 C -0.156 4.156 7 C -0.214 4.214 8 C -0.161 4.161 9 C -0.112 4.112 10 C -0.172 4.172 11 C -0.154 4.154 12 C -0.106 4.106 13 C -0.037 4.037 14 N 0.064 4.936 15 C -0.522 4.522 16 H 0.136 0.864 17 C -0.189 4.189 18 N -0.483 5.483 19 Si 0.812 3.188 20 H -0.180 1.180 21 H -0.201 1.201 22 H -0.168 1.168 23 C -0.171 4.171 24 C -0.017 4.017 25 N -0.381 5.381 26 C 0.278 3.722 27 O -0.436 6.436 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.264 0.736 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.165 0.835 35 H 0.158 0.842 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.155 0.845 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -3.179 -9.027 8.039 12.499 hybrid contribution 0.970 -0.194 0.065 0.991 sum -2.209 -9.221 8.104 12.473 Atomic orbital electron populations 1.22017 0.90804 1.04007 1.03485 1.21319 0.96870 0.82112 0.95676 1.46561 1.54593 1.11074 1.24864 1.17251 0.80015 0.83260 0.81685 1.90714 1.36695 1.76084 1.39239 1.20637 1.06669 0.95509 0.92763 1.20592 1.07289 0.94212 0.99355 1.18414 1.04295 0.96670 0.96693 1.20474 0.99615 0.91527 0.99589 1.20738 1.00367 0.99917 0.96136 1.21036 1.01806 0.96454 0.96060 1.20117 0.98072 0.92301 1.00077 1.18716 1.02091 0.86784 0.96072 1.40125 1.32798 1.08356 1.12338 1.19931 0.95215 1.39258 0.97832 0.86384 1.26689 0.94091 0.94426 1.03694 1.70071 1.02890 1.38544 1.36845 0.84951 0.79344 0.79176 0.75365 1.17967 1.20086 1.16797 1.23149 1.04024 0.94160 0.95812 1.22385 1.05134 0.96415 0.77809 1.46217 1.63586 1.15847 1.12499 1.21626 0.77110 0.83666 0.89840 1.90784 1.56250 1.72621 1.23974 0.93652 0.88726 0.89511 0.73570 0.84959 0.85198 0.83520 0.84216 0.88011 0.90504 0.89431 0.84456 0.87029 0.87325 0.74444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 8.47 71.98 0.61 -3.47 16 2 C 0.13 4.07 0.89 3.60 0.00 4.07 16 3 N -0.71 -28.74 5.08 -426.67 -2.17 -30.91 16 4 C 0.59 29.45 6.99 86.51 0.60 30.06 16 5 O -0.55 -29.57 12.85 17.00 0.22 -29.35 16 6 C -0.04 -2.18 6.77 39.91 0.27 -1.91 16 7 C -0.19 -9.77 10.55 22.63 0.24 -9.53 16 8 C -0.16 -7.83 6.16 -21.33 -0.13 -7.97 16 9 C -0.09 -3.88 10.06 22.31 0.22 -3.66 16 10 C -0.15 -5.62 9.97 22.03 0.22 -5.40 16 11 C -0.13 -5.22 10.02 22.32 0.22 -5.00 16 12 C -0.09 -4.04 8.67 22.38 0.19 -3.85 16 13 C 0.08 4.06 6.04 39.06 0.24 4.30 16 14 N -0.27 -14.29 2.78 -331.35 -0.92 -15.21 16 15 C -0.40 -18.96 7.73 84.09 0.65 -18.31 16 16 H 0.12 5.10 6.35 -2.91 -0.02 5.08 16 17 C 0.02 0.98 4.69 84.95 0.40 1.38 16 18 N -0.85 -43.13 11.15 21.67 0.24 -42.89 16 19 Si 0.99 33.45 29.57 68.60 2.03 35.48 16 20 H -0.26 -8.00 7.11 99.48 0.71 -7.29 16 21 H -0.28 -9.41 7.11 99.48 0.71 -8.70 16 22 H -0.24 -7.60 7.11 99.48 0.71 -6.90 16 23 C -0.13 -2.45 6.32 31.65 0.20 -2.25 16 24 C 0.11 1.41 7.78 86.83 0.68 2.09 16 25 N -0.72 -16.96 6.24 -459.81 -2.87 -19.83 16 26 C 0.49 17.93 7.28 87.90 0.64 18.57 16 27 O -0.56 -27.57 15.45 18.22 0.28 -27.28 16 28 H 0.04 1.70 6.16 -2.39 -0.01 1.68 16 29 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.42 16.48 4.15 -92.71 -0.39 16.09 16 32 H 0.13 6.62 8.06 -2.91 -0.02 6.59 16 33 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 34 H 0.15 4.11 8.06 -2.91 -0.02 4.08 16 35 H 0.14 4.42 8.06 -2.91 -0.02 4.39 16 36 H 0.10 4.88 6.86 -2.91 -0.02 4.86 16 37 H 0.28 13.32 8.31 -92.71 -0.77 12.55 16 38 H 0.09 1.73 7.88 -2.39 -0.02 1.71 16 39 H 0.14 1.50 7.90 -2.39 -0.02 1.49 16 40 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.42 8.32 8.96 -92.70 -0.83 7.49 16 Total: -1.00 -79.40 344.19 1.94 -77.46 By element: Atomic # 1 Polarization: 53.54 SS G_CDS: -0.13 Total: 53.41 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 5.26 Total: -0.88 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -5.72 Total: -108.83 kcal Atomic # 8 Polarization: -57.14 SS G_CDS: 0.50 Total: -56.64 kcal Atomic # 14 Polarization: 33.45 SS G_CDS: 2.03 Total: 35.48 kcal Total: -79.40 1.94 -77.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889038234.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.296 kcal (2) G-P(sol) polarization free energy of solvation -79.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds