Wall clock time and date at job start Tue Mar 31 2020 15:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38053 * 126.29227 * 2 1 4 4 C 1.47410 * 126.41531 * 0.02562 * 3 2 1 5 5 O 1.21607 * 120.00070 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99629 * 180.02562 * 4 3 2 7 7 C 1.39876 * 119.99924 * 185.27988 * 6 4 3 8 8 C 1.38903 * 120.05356 * 213.20972 * 7 6 4 9 9 C 1.38163 * 119.96890 * 179.97438 * 8 7 6 10 10 C 1.38042 * 120.01079 * 0.02562 * 9 8 7 11 11 C 1.38659 * 120.15362 * 359.97438 * 10 9 8 12 12 C 1.37852 * 120.11388 * 0.22498 * 11 10 9 13 13 C 1.51103 * 107.26890 * 179.97438 * 11 10 9 14 14 O 1.43941 * 105.94763 * 17.70049 * 13 11 10 15 15 C 1.43926 * 104.96390 * 331.52446 * 14 13 11 16 16 C 1.41299 * 107.16529 * 180.28224 * 3 2 1 17 17 N 1.30443 * 108.02637 * 359.55337 * 16 3 2 18 18 N 1.34266 * 126.29166 * 180.02562 * 2 1 3 19 19 C 1.46497 * 125.75136 * 359.96251 * 18 2 1 20 20 C 1.50706 * 109.46985 * 89.99730 * 19 18 2 21 21 H 1.07999 * 120.00072 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99529 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99677 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 120.00425 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.46853 * 90.00247 * 24 22 20 26 26 H 1.48505 * 109.47313 * 209.99749 * 24 22 20 27 27 H 1.48501 * 109.47462 * 330.00214 * 24 22 20 28 28 H 1.08995 * 109.47149 * 89.97713 * 1 2 3 29 29 H 1.08994 * 109.46832 * 209.98051 * 1 2 3 30 30 H 1.09000 * 109.47270 * 329.98005 * 1 2 3 31 31 H 0.96999 * 120.00462 * 5.27698 * 6 4 3 32 32 H 1.08002 * 120.02011 * 0.02589 * 8 7 6 33 33 H 1.07995 * 119.99538 * 179.97438 * 9 8 7 34 34 H 1.07994 * 120.07106 * 179.68196 * 12 11 10 35 35 H 1.09002 * 110.15615 * 136.81610 * 13 11 10 36 36 H 1.08999 * 110.15345 * 258.58314 * 13 11 10 37 37 H 1.08994 * 110.15985 * 147.60484 * 15 14 13 38 38 H 1.09002 * 110.15679 * 269.28966 * 15 14 13 39 39 H 1.08007 * 125.98506 * 179.71170 * 16 3 2 40 40 H 1.09009 * 109.47079 * 209.99294 * 19 18 2 41 41 H 1.08999 * 109.47297 * 329.99472 * 19 18 2 42 42 H 0.96999 * 120.00012 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3242 1.1127 0.0000 4 6 1.8861 2.5202 0.0005 5 8 0.6998 2.7877 0.0015 6 7 2.8002 3.5105 -0.0001 7 6 2.3884 4.8426 0.1119 8 6 3.0974 5.8466 -0.5351 9 6 2.6887 7.1617 -0.4237 10 6 1.5766 7.4776 0.3306 11 6 0.8668 6.4775 0.9776 12 6 1.2719 5.1640 0.8738 13 6 -0.2777 7.1405 1.7082 14 8 -0.4248 8.4431 1.1136 15 6 0.8910 8.7875 0.6429 16 6 3.6592 0.6497 -0.0067 17 7 3.6342 -0.6544 -0.0007 18 7 2.3018 -1.0822 -0.0005 19 6 1.8501 -2.4758 -0.0003 20 6 1.6945 -2.9536 -1.4212 21 1 1.9108 -2.2860 -2.2421 22 6 1.2769 -4.2433 -1.6729 23 7 1.1415 -4.6604 -2.9128 24 14 0.9048 -5.3985 -0.2530 25 1 -0.5259 -5.2737 0.1248 26 1 1.1877 -6.7969 -0.6654 27 1 1.7568 -5.0436 0.9104 28 1 -0.3633 0.0004 -1.0276 29 1 -0.3633 -0.8901 0.5135 30 1 -0.3634 0.8898 0.5141 31 1 3.7438 3.2996 -0.0781 32 1 3.9672 5.5994 -1.1256 33 1 3.2399 7.9428 -0.9262 34 1 0.7216 4.3862 1.3822 35 1 -1.1923 6.5623 1.5769 36 1 -0.0417 7.2360 2.7680 37 1 0.8201 9.3982 -0.2571 38 1 1.4387 9.3238 1.4178 39 1 4.5451 1.2675 -0.0128 40 1 2.5851 -3.0959 0.5130 41 1 0.8918 -2.5471 0.5141 42 1 0.8474 -5.5676 -3.0899 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889835528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:41 Heat of formation + Delta-G solvation = 30.345538 kcal Electronic energy + Delta-G solvation = -26403.838852 eV Core-core repulsion = 22543.780007 eV Total energy + Delta-G solvation = -3860.058844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.22528 -40.79762 -39.42984 -37.32705 -34.63487 -33.94387 -32.27827 -31.74661 -31.46737 -30.48852 -28.28032 -27.59948 -26.85668 -25.00267 -23.28251 -22.51796 -22.02249 -21.39372 -19.97988 -19.21171 -17.70276 -17.28912 -17.05850 -16.66925 -16.51086 -15.87778 -15.28828 -15.16619 -14.71800 -14.63862 -14.35663 -14.19377 -13.76355 -13.65316 -13.43836 -13.07425 -12.83409 -12.80156 -12.63010 -12.48917 -12.37740 -12.17568 -11.92085 -11.70917 -11.30888 -11.20519 -10.89430 -10.74053 -10.48402 -10.34285 -9.94414 -9.85754 -9.63532 -8.97139 -8.90075 -8.77445 -8.28952 -8.00282 -6.37956 -4.43316 0.94491 1.15284 1.97361 2.58352 2.85441 3.06533 3.13589 3.15200 3.27983 3.39609 3.69107 3.75383 4.04256 4.10917 4.39469 4.74261 4.81399 4.95201 5.00067 5.03329 5.03859 5.09560 5.16598 5.29321 5.31245 5.47861 5.49998 5.53079 5.66708 5.79335 5.93217 5.95692 6.08617 6.13584 6.19190 6.27133 6.36101 6.39971 6.49025 6.50577 6.82285 6.88929 7.11814 7.39724 7.44925 8.12512 8.14990 8.29348 8.64590 9.15445 10.74171 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.028132 B = 0.002338 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.068214 B =11972.565778 C =12446.176102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.175 3.825 3 C -0.333 4.333 4 C 0.605 3.395 5 O -0.533 6.533 6 N -0.676 5.676 7 C 0.171 3.829 8 C -0.147 4.147 9 C -0.072 4.072 10 C -0.160 4.160 11 C -0.112 4.112 12 C -0.097 4.097 13 C 0.092 3.908 14 O -0.363 6.363 15 C 0.095 3.905 16 C 0.063 3.937 17 N -0.289 5.289 18 N -0.311 5.311 19 C 0.224 3.776 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.082 3.918 23 N -0.881 5.881 24 Si 0.873 3.127 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.263 1.263 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.411 0.589 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.140 0.860 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.179 0.821 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.666 22.189 9.124 24.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.038 3.962 3 C -0.349 4.349 4 C 0.397 3.603 5 O -0.410 6.410 6 N -0.320 5.320 7 C 0.076 3.924 8 C -0.168 4.168 9 C -0.090 4.090 10 C -0.161 4.161 11 C -0.113 4.113 12 C -0.117 4.117 13 C 0.015 3.985 14 O -0.282 6.282 15 C 0.019 3.981 16 C -0.125 4.125 17 N -0.108 5.108 18 N -0.087 5.087 19 C 0.105 3.895 20 C -0.585 4.585 21 H 0.100 0.900 22 C -0.123 4.123 23 N -0.518 5.518 24 Si 0.698 3.302 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.188 1.188 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.247 0.753 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.158 0.842 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.196 0.804 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.258 20.963 9.003 22.926 hybrid contribution 0.248 -0.393 0.333 0.572 sum 2.506 20.570 9.336 22.728 Atomic orbital electron populations 1.20627 0.86534 1.03811 1.04427 1.21488 0.95025 0.86332 0.93379 1.19510 0.93315 0.91928 1.30132 1.17402 0.84903 0.83880 0.74081 1.90725 1.16461 1.84043 1.49772 1.43359 1.10982 1.03583 1.74098 1.17602 0.95602 0.83780 0.95415 1.20867 1.02397 0.92152 1.01392 1.20093 0.95349 0.95808 0.97792 1.20971 0.97860 0.96082 1.01178 1.20833 0.97932 0.93671 0.98832 1.20349 0.97416 0.95077 0.98864 1.21746 0.97187 0.83354 0.96168 1.89072 1.27919 1.33300 1.77863 1.21674 0.83071 0.93682 0.99688 1.23771 0.96306 0.92618 0.99775 1.77173 0.98069 1.12297 1.23285 1.48949 1.02735 1.07624 1.49438 1.20194 0.95799 0.73135 1.00336 1.21068 1.48285 0.99248 0.89903 0.90018 1.24792 0.94247 0.97403 0.95900 1.69860 1.44928 1.18289 1.18684 0.86905 0.79539 0.81093 0.82641 1.19460 1.20302 1.18786 0.89260 0.90909 0.88630 0.75277 0.85033 0.85456 0.84218 0.88243 0.90461 0.88772 0.90812 0.80400 0.92613 0.93322 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.60 9.57 36.01 0.34 -1.26 16 2 C 0.17 3.32 7.01 -81.59 -0.57 2.75 16 3 C -0.33 -5.61 6.13 -105.07 -0.64 -6.26 16 4 C 0.61 9.29 7.55 -12.53 -0.09 9.20 16 5 O -0.53 -9.35 12.53 5.27 0.07 -9.28 16 6 N -0.68 -7.95 5.33 -10.82 -0.06 -8.00 16 7 C 0.17 2.02 6.28 -83.68 -0.53 1.50 16 8 C -0.15 -1.41 9.96 -39.36 -0.39 -1.80 16 9 C -0.07 -0.64 10.04 -39.68 -0.40 -1.04 16 10 C -0.16 -1.61 6.32 -104.34 -0.66 -2.27 16 11 C -0.11 -1.27 6.32 -104.41 -0.66 -1.93 16 12 C -0.10 -1.22 8.64 -39.46 -0.34 -1.56 16 13 C 0.09 0.90 7.63 36.20 0.28 1.18 16 14 O -0.36 -3.96 11.72 -35.23 -0.41 -4.37 16 15 C 0.10 0.82 7.63 36.21 0.28 1.09 16 16 C 0.06 1.00 11.51 -16.98 -0.20 0.81 16 17 N -0.29 -5.81 12.50 30.86 0.39 -5.43 16 18 N -0.31 -6.59 3.56 -57.76 -0.21 -6.79 16 19 C 0.22 5.05 5.04 -5.19 -0.03 5.02 16 20 C -0.55 -14.66 9.94 -34.44 -0.34 -15.00 16 21 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 22 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 23 N -0.88 -25.45 13.96 55.43 0.77 -24.67 16 24 Si 0.87 19.37 27.47 -169.99 -4.67 14.70 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 28 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 29 H 0.07 1.14 7.05 -51.93 -0.37 0.77 16 30 H 0.10 1.49 6.50 -51.93 -0.34 1.16 16 31 H 0.41 3.57 7.79 -40.82 -0.32 3.25 16 32 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.14 1.92 6.43 -52.49 -0.34 1.58 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.18 1.91 7.51 -52.48 -0.39 1.52 16 40 H 0.06 1.26 7.20 -51.92 -0.37 0.89 16 41 H 0.05 1.01 6.45 -51.93 -0.33 0.67 16 42 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 354.96 15.07 5.35 5.35 Total: -1.00 -32.66 354.96 -7.83 -40.49 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.01 Total: 5.48 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -4.05 Total: -7.47 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.90 Total: -44.90 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.35 Total: -13.65 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.67 Total: 14.70 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.66 -7.83 -40.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889835528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.840 kcal (2) G-P(sol) polarization free energy of solvation -32.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds