Wall clock time and date at job start Tue Mar 31 2020 15:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38053 * 126.29227 * 2 1 4 4 C 1.47410 * 126.41531 * 0.02562 * 3 2 1 5 5 O 1.21607 * 120.00070 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99629 * 180.02562 * 4 3 2 7 7 C 1.39876 * 119.99924 * 185.27988 * 6 4 3 8 8 C 1.38903 * 120.05356 * 213.20972 * 7 6 4 9 9 C 1.38163 * 119.96890 * 179.97438 * 8 7 6 10 10 C 1.38042 * 120.01079 * 0.02562 * 9 8 7 11 11 C 1.38659 * 120.15362 * 359.97438 * 10 9 8 12 12 C 1.37852 * 120.11388 * 0.22498 * 11 10 9 13 13 C 1.51103 * 107.26890 * 179.97438 * 11 10 9 14 14 O 1.43941 * 105.94763 * 17.70049 * 13 11 10 15 15 C 1.43926 * 104.96390 * 331.52446 * 14 13 11 16 16 C 1.41299 * 107.16529 * 180.28224 * 3 2 1 17 17 N 1.30443 * 108.02637 * 359.55337 * 16 3 2 18 18 N 1.34266 * 126.29166 * 180.02562 * 2 1 3 19 19 C 1.46497 * 125.75136 * 359.96251 * 18 2 1 20 20 C 1.50706 * 109.46985 * 89.99730 * 19 18 2 21 21 H 1.07999 * 120.00072 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99529 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99677 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 120.00425 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.46853 * 90.00247 * 24 22 20 26 26 H 1.48505 * 109.47313 * 209.99749 * 24 22 20 27 27 H 1.48501 * 109.47462 * 330.00214 * 24 22 20 28 28 H 1.08995 * 109.47149 * 89.97713 * 1 2 3 29 29 H 1.08994 * 109.46832 * 209.98051 * 1 2 3 30 30 H 1.09000 * 109.47270 * 329.98005 * 1 2 3 31 31 H 0.96999 * 120.00462 * 5.27698 * 6 4 3 32 32 H 1.08002 * 120.02011 * 0.02589 * 8 7 6 33 33 H 1.07995 * 119.99538 * 179.97438 * 9 8 7 34 34 H 1.07994 * 120.07106 * 179.68196 * 12 11 10 35 35 H 1.09002 * 110.15615 * 136.81610 * 13 11 10 36 36 H 1.08999 * 110.15345 * 258.58314 * 13 11 10 37 37 H 1.08994 * 110.15985 * 147.60484 * 15 14 13 38 38 H 1.09002 * 110.15679 * 269.28966 * 15 14 13 39 39 H 1.08007 * 125.98506 * 179.71170 * 16 3 2 40 40 H 1.09009 * 109.47079 * 209.99294 * 19 18 2 41 41 H 1.08999 * 109.47297 * 329.99472 * 19 18 2 42 42 H 0.96999 * 120.00012 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3242 1.1127 0.0000 4 6 1.8861 2.5202 0.0005 5 8 0.6998 2.7877 0.0015 6 7 2.8002 3.5105 -0.0001 7 6 2.3884 4.8426 0.1119 8 6 3.0974 5.8466 -0.5351 9 6 2.6887 7.1617 -0.4237 10 6 1.5766 7.4776 0.3306 11 6 0.8668 6.4775 0.9776 12 6 1.2719 5.1640 0.8738 13 6 -0.2777 7.1405 1.7082 14 8 -0.4248 8.4431 1.1136 15 6 0.8910 8.7875 0.6429 16 6 3.6592 0.6497 -0.0067 17 7 3.6342 -0.6544 -0.0007 18 7 2.3018 -1.0822 -0.0005 19 6 1.8501 -2.4758 -0.0003 20 6 1.6945 -2.9536 -1.4212 21 1 1.9108 -2.2860 -2.2421 22 6 1.2769 -4.2433 -1.6729 23 7 1.1415 -4.6604 -2.9128 24 14 0.9048 -5.3985 -0.2530 25 1 -0.5259 -5.2737 0.1248 26 1 1.1877 -6.7969 -0.6654 27 1 1.7568 -5.0436 0.9104 28 1 -0.3633 0.0004 -1.0276 29 1 -0.3633 -0.8901 0.5135 30 1 -0.3634 0.8898 0.5141 31 1 3.7438 3.2996 -0.0781 32 1 3.9672 5.5994 -1.1256 33 1 3.2399 7.9428 -0.9262 34 1 0.7216 4.3862 1.3822 35 1 -1.1923 6.5623 1.5769 36 1 -0.0417 7.2360 2.7680 37 1 0.8201 9.3982 -0.2571 38 1 1.4387 9.3238 1.4178 39 1 4.5451 1.2675 -0.0128 40 1 2.5851 -3.0959 0.5130 41 1 0.8918 -2.5471 0.5141 42 1 0.8474 -5.5676 -3.0899 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889835528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:40 Heat of formation + Delta-G solvation = 8.047487 kcal Electronic energy + Delta-G solvation = -26404.805768 eV Core-core repulsion = 22543.780007 eV Total energy + Delta-G solvation = -3861.025760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.49178 -41.73923 -40.49344 -38.24280 -35.87134 -35.52777 -34.00476 -32.95655 -32.46755 -31.45556 -29.70463 -28.68471 -28.13734 -25.92800 -24.93743 -23.71220 -22.82808 -22.38880 -21.20299 -20.61344 -19.30510 -18.81484 -18.15016 -17.48389 -17.29464 -16.83725 -16.63191 -16.58532 -16.07019 -15.72174 -15.50100 -15.43782 -15.02278 -14.64652 -14.54813 -14.33920 -14.19658 -13.92121 -13.79855 -13.73528 -13.53925 -13.31048 -13.16023 -13.04176 -12.64344 -12.57876 -12.18234 -12.03365 -11.86724 -11.75756 -11.62538 -10.93696 -10.91577 -10.68969 -10.31972 -9.78261 -9.62439 -8.95876 -8.44512 -6.56791 0.08217 0.34809 0.64808 1.25620 1.33062 1.33964 1.43854 1.55723 2.12005 2.23353 2.34418 2.75628 2.87869 2.98499 3.26223 3.61783 3.65609 3.71632 3.98991 4.02638 4.13360 4.28186 4.34358 4.37085 4.44051 4.45898 4.51258 4.62216 4.65954 4.67570 4.71798 4.79022 4.93508 5.03534 5.08811 5.15720 5.17851 5.30056 5.36295 5.45683 5.57321 5.74755 5.78978 5.98807 6.16896 6.43508 6.46237 6.73612 7.07131 7.16435 8.71880 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.028132 B = 0.002338 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.068214 B =11972.565778 C =12446.176102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.154 3.846 3 C -0.331 4.331 4 C 0.607 3.393 5 O -0.560 6.560 6 N -0.658 5.658 7 C 0.147 3.853 8 C -0.139 4.139 9 C -0.069 4.069 10 C -0.162 4.162 11 C -0.130 4.130 12 C -0.117 4.117 13 C 0.091 3.909 14 O -0.383 6.383 15 C 0.092 3.908 16 C 0.084 3.916 17 N -0.331 5.331 18 N -0.337 5.337 19 C 0.233 3.767 20 C -0.553 4.553 21 H 0.026 0.974 22 C 0.023 3.977 23 N -0.935 5.935 24 Si 0.949 3.051 25 H -0.252 1.252 26 H -0.278 1.278 27 H -0.242 1.242 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.427 0.573 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.231 0.769 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.857 24.170 10.615 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.018 3.982 3 C -0.347 4.347 4 C 0.398 3.602 5 O -0.439 6.439 6 N -0.303 5.303 7 C 0.053 3.947 8 C -0.160 4.160 9 C -0.087 4.087 10 C -0.163 4.163 11 C -0.131 4.131 12 C -0.137 4.137 13 C 0.014 3.986 14 O -0.302 6.302 15 C 0.016 3.984 16 C -0.103 4.103 17 N -0.150 5.150 18 N -0.113 5.113 19 C 0.113 3.887 20 C -0.591 4.591 21 H 0.045 0.955 22 C -0.177 4.177 23 N -0.573 5.573 24 Si 0.769 3.231 25 H -0.177 1.177 26 H -0.203 1.203 27 H -0.165 1.165 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.123 0.877 31 H 0.266 0.734 32 H 0.178 0.822 33 H 0.180 0.820 34 H 0.137 0.863 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.130 0.870 38 H 0.113 0.887 39 H 0.247 0.753 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.483 23.000 10.504 25.524 hybrid contribution -0.063 -0.751 -0.219 0.785 sum 3.419 22.249 10.285 24.748 Atomic orbital electron populations 1.20624 0.85650 1.04717 1.03919 1.21976 0.95993 0.86657 0.93591 1.19769 0.93577 0.92361 1.28953 1.17225 0.84973 0.83886 0.74120 1.90717 1.17736 1.84326 1.51102 1.43071 1.11192 1.03127 1.72909 1.17794 0.96307 0.83915 0.96688 1.21204 1.02541 0.91765 1.00443 1.20517 0.94870 0.96415 0.96945 1.21331 0.97975 0.96395 1.00598 1.21010 0.98825 0.93610 0.99641 1.20305 0.98191 0.95258 0.99952 1.21811 0.96801 0.83047 0.96898 1.89045 1.29438 1.33501 1.78183 1.21903 0.82158 0.93206 1.01115 1.24578 0.97601 0.91644 0.96518 1.77116 0.97928 1.14435 1.25514 1.48786 1.03528 1.07336 1.51665 1.19921 0.96892 0.74454 0.97431 1.21173 1.48198 0.98842 0.90920 0.95536 1.25821 0.93642 0.99250 0.99030 1.70023 1.46544 1.19099 1.21591 0.85709 0.80457 0.77832 0.79058 1.17662 1.20308 1.16481 0.90386 0.89956 0.87718 0.73421 0.82223 0.82042 0.86323 0.88533 0.88901 0.87044 0.88747 0.75284 0.92423 0.91067 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.11 9.57 71.24 0.68 -2.43 16 2 C 0.15 5.88 7.01 42.15 0.30 6.18 16 3 C -0.33 -10.95 6.13 -20.15 -0.12 -11.07 16 4 C 0.61 18.24 7.55 86.66 0.65 18.90 16 5 O -0.56 -19.85 12.53 -4.05 -0.05 -19.90 16 6 N -0.66 -14.29 5.33 -306.40 -1.63 -15.92 16 7 C 0.15 3.25 6.28 38.18 0.24 3.49 16 8 C -0.14 -2.23 9.96 22.41 0.22 -2.00 16 9 C -0.07 -0.99 10.04 22.21 0.22 -0.77 16 10 C -0.16 -2.89 6.32 -19.68 -0.12 -3.01 16 11 C -0.13 -2.85 6.32 -19.73 -0.12 -2.97 16 12 C -0.12 -2.92 8.64 22.35 0.19 -2.73 16 13 C 0.09 1.73 7.63 71.36 0.54 2.28 16 14 O -0.38 -7.84 11.72 -148.98 -1.75 -9.58 16 15 C 0.09 1.34 7.63 71.37 0.54 1.89 16 16 C 0.08 2.53 11.51 85.65 0.99 3.52 16 17 N -0.33 -13.21 12.50 -56.27 -0.70 -13.91 16 18 N -0.34 -14.39 3.56 -336.66 -1.20 -15.59 16 19 C 0.23 10.54 5.04 85.64 0.43 10.97 16 20 C -0.55 -30.75 9.94 25.60 0.25 -30.49 16 21 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 22 C 0.02 1.25 5.47 84.65 0.46 1.72 16 23 N -0.93 -55.92 13.96 21.45 0.30 -55.62 16 24 Si 0.95 39.72 27.47 68.60 1.88 41.61 16 25 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 26 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 27 H -0.24 -9.21 6.54 99.48 0.65 -8.56 16 28 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 29 H 0.08 2.58 7.05 -2.39 -0.02 2.56 16 30 H 0.10 3.33 6.50 -2.39 -0.02 3.32 16 31 H 0.43 6.14 7.79 -92.71 -0.72 5.42 16 32 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 33 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 34 H 0.12 3.40 6.43 -2.91 -0.02 3.38 16 35 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.23 4.08 7.51 -2.91 -0.02 4.06 16 40 H 0.06 2.57 7.20 -2.38 -0.02 2.55 16 41 H 0.07 2.87 6.45 -2.39 -0.02 2.86 16 42 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -75.41 354.96 2.51 -72.90 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.30 Total: 22.56 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 5.36 Total: -6.54 kcal Atomic # 7 Polarization: -97.80 SS G_CDS: -3.24 Total: -101.04 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -1.80 Total: -29.49 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 1.88 Total: 41.61 kcal Total: -75.41 2.51 -72.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889835528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.944 kcal (2) G-P(sol) polarization free energy of solvation -75.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds