Wall clock time and date at job start Tue Mar 31 2020 15:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38125 * 126.29295 * 2 1 4 4 C 1.47294 * 126.42502 * 359.97438 * 3 2 1 5 5 O 1.21523 * 119.99944 * 0.02562 * 4 3 2 6 6 O 1.34755 * 119.99650 * 180.02562 * 4 3 2 7 7 C 1.45196 * 116.99865 * 179.97438 * 6 4 3 8 8 H 1.09002 * 110.26438 * 27.93754 * 7 6 4 9 9 C 1.54336 * 110.29582 * 149.99742 * 7 6 4 10 10 C 1.54364 * 102.39186 * 92.60216 * 9 7 6 11 11 C 1.51218 * 105.11829 * 26.28989 * 10 9 7 12 12 C 1.38746 * 130.68844 * 162.87771 * 11 10 9 13 13 C 1.38573 * 118.55688 * 179.97438 * 12 11 10 14 14 C 1.38233 * 118.99150 * 0.02562 * 13 12 11 15 15 N 1.31688 * 120.79966 * 359.96912 * 14 13 12 16 16 C 1.32301 * 122.03101 * 0.03876 * 15 14 13 17 17 C 1.41338 * 107.14688 * 179.97438 * 3 2 1 18 18 N 1.30434 * 108.01187 * 0.02562 * 17 3 2 19 19 N 1.34223 * 126.30005 * 179.97438 * 2 1 3 20 20 C 1.46503 * 125.74196 * 0.05494 * 19 2 1 21 21 C 1.50700 * 109.47138 * 269.98765 * 20 19 2 22 22 H 1.08004 * 119.99970 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00019 * 180.02562 * 21 20 19 24 24 N 1.31512 * 120.00160 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00257 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46937 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47630 * 119.99551 * 25 23 21 28 28 H 1.48500 * 109.47360 * 239.99970 * 25 23 21 29 29 H 1.09002 * 109.47189 * 270.01687 * 1 2 3 30 30 H 1.09004 * 109.47541 * 30.02717 * 1 2 3 31 31 H 1.09003 * 109.46906 * 150.02285 * 1 2 3 32 32 H 1.09008 * 110.81929 * 210.82355 * 9 7 6 33 33 H 1.08997 * 110.82371 * 334.36775 * 9 7 6 34 34 H 1.09002 * 110.31432 * 145.20824 * 10 9 7 35 35 H 1.09002 * 110.30667 * 267.38128 * 10 9 7 36 36 H 1.07998 * 120.72060 * 0.02562 * 12 11 10 37 37 H 1.08001 * 120.50871 * 179.97438 * 13 12 11 38 38 H 1.07990 * 119.60117 * 179.97438 * 14 13 12 39 39 H 1.08000 * 125.99131 * 180.26864 * 17 3 2 40 40 H 1.09006 * 109.46710 * 29.98371 * 20 19 2 41 41 H 1.09000 * 109.47127 * 149.98305 * 20 19 2 42 42 H 0.96997 * 120.00119 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8870 2.5197 -0.0005 5 8 0.7016 2.7873 -0.0006 6 8 2.8012 3.5097 -0.0010 7 6 2.2980 4.8717 -0.0021 8 1 1.3196 4.9130 0.4767 9 6 3.2881 5.8088 0.7214 10 6 4.1659 6.3232 -0.4396 11 6 3.2882 6.2326 -1.6677 12 6 3.4118 6.8299 -2.9139 13 6 2.4463 6.5679 -3.8727 14 6 1.3980 5.7247 -3.5550 15 7 1.3128 5.1750 -2.3614 16 6 2.2139 5.4001 -1.4192 17 6 3.6598 0.6497 0.0006 18 7 3.6340 -0.6544 0.0004 19 7 2.3016 -1.0817 0.0005 20 6 1.8499 -2.4754 0.0000 21 6 1.6942 -2.9535 1.4206 22 1 1.9106 -2.2862 2.2418 23 6 1.2767 -4.2432 1.6721 24 7 1.0137 -5.0560 0.6722 25 14 1.0844 -4.8362 3.4330 26 1 1.4404 -3.7378 4.3668 27 1 -0.3234 -5.2476 3.6659 28 1 1.9837 -5.9946 3.6663 29 1 -0.3634 0.0003 1.0277 30 1 -0.3634 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 2.7607 6.6325 1.2027 33 1 3.8872 5.2557 1.4446 34 1 4.4616 7.3571 -0.2611 35 1 5.0466 5.6917 -0.5565 36 1 4.2429 7.4841 -3.1321 37 1 2.5113 7.0164 -4.8531 38 1 0.6399 5.5141 -4.2947 39 1 4.5459 1.2671 0.0049 40 1 0.8915 -2.5465 -0.5144 41 1 2.5848 -3.0953 -0.5136 42 1 0.7196 -5.9632 0.8491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890156555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:11 Heat of formation + Delta-G solvation = 20.221038 kcal Electronic energy + Delta-G solvation = -26833.250012 eV Core-core repulsion = 22972.752137 eV Total energy + Delta-G solvation = -3860.497875 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16711 -40.73218 -39.33781 -36.78731 -35.15201 -33.90471 -32.70524 -32.11909 -31.20912 -29.55988 -28.13723 -27.15431 -26.65249 -23.81628 -23.68854 -22.67441 -21.91040 -21.01209 -20.24473 -18.90005 -17.53917 -17.21886 -16.80024 -16.52551 -16.14766 -15.70369 -15.12372 -15.06172 -14.81831 -14.51150 -14.22143 -13.77186 -13.67886 -13.40022 -13.08875 -12.98807 -12.59514 -12.55827 -12.37383 -12.12715 -12.09347 -11.82411 -11.70387 -11.52306 -11.25563 -11.11657 -10.91362 -10.72613 -10.40414 -10.27293 -9.98694 -9.92397 -9.75849 -9.40566 -9.04526 -8.72424 -8.61837 -8.03316 -6.34670 -4.42530 0.78586 1.05425 1.98007 2.74727 2.80389 3.16822 3.24827 3.28816 3.40531 3.61199 3.66961 3.81240 4.14299 4.23816 4.44704 4.61871 4.66856 4.76947 4.89210 4.98933 5.01609 5.18066 5.23154 5.29105 5.36538 5.46832 5.50459 5.54025 5.64739 5.68175 5.78084 5.88336 5.94486 6.01368 6.08878 6.40935 6.42356 6.44442 6.74837 6.82844 6.89388 7.15677 7.54046 7.73428 7.75896 7.83668 8.23916 8.38294 8.63184 9.24538 10.73692 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024528 B = 0.002596 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.268567 B =10782.493167 C =11076.704519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.173 3.827 3 C -0.316 4.316 4 C 0.548 3.452 5 O -0.514 6.514 6 O -0.341 6.341 7 C 0.139 3.861 8 H 0.103 0.897 9 C -0.114 4.114 10 C -0.078 4.078 11 C -0.135 4.135 12 C -0.071 4.071 13 C -0.166 4.166 14 C 0.098 3.902 15 N -0.456 5.456 16 C 0.100 3.900 17 C 0.079 3.921 18 N -0.297 5.297 19 N -0.311 5.311 20 C 0.250 3.750 21 C -0.540 4.540 22 H 0.066 0.934 23 C 0.067 3.933 24 N -0.889 5.889 25 Si 0.908 3.092 26 H -0.270 1.270 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.158 0.842 39 H 0.184 0.816 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.124 24.059 -5.299 24.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.035 3.965 3 C -0.329 4.329 4 C 0.395 3.605 5 O -0.403 6.403 6 O -0.258 6.258 7 C 0.082 3.918 8 H 0.121 0.879 9 C -0.151 4.151 10 C -0.116 4.116 11 C -0.137 4.137 12 C -0.097 4.097 13 C -0.186 4.186 14 C -0.060 4.060 15 N -0.164 5.164 16 C -0.038 4.038 17 C -0.108 4.108 18 N -0.117 5.117 19 N -0.087 5.087 20 C 0.133 3.867 21 C -0.578 4.578 22 H 0.085 0.915 23 C -0.137 4.137 24 N -0.527 5.527 25 Si 0.735 3.265 26 H -0.195 1.195 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.151 0.849 37 H 0.156 0.844 38 H 0.175 0.825 39 H 0.201 0.799 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.699 22.132 -5.163 23.025 hybrid contribution 0.070 0.869 0.448 0.981 sum 3.769 23.001 -4.715 23.780 Atomic orbital electron populations 1.20626 0.86540 1.04082 1.04149 1.21445 0.94982 0.86409 0.93699 1.18817 0.93747 0.89221 1.31164 1.20087 0.83637 0.84904 0.71889 1.90773 1.17667 1.84077 1.47807 1.86669 1.39651 1.14512 1.84970 1.21847 1.00073 0.79725 0.90134 0.87916 1.22437 0.97237 0.97936 0.97521 1.21011 0.97763 1.02407 0.90391 1.21483 0.97608 0.98449 0.96134 1.21054 0.98682 0.98181 0.91747 1.22144 0.95899 1.00106 1.00418 1.22732 0.97099 0.93177 0.92961 1.66908 1.27478 1.21202 1.00822 1.21985 0.91035 0.94990 0.95785 1.23894 0.96615 0.92140 0.98187 1.77198 0.98303 1.12308 1.23872 1.49402 1.02600 1.08274 1.48444 1.19906 0.96512 0.70675 0.99586 1.21283 1.47411 0.98184 0.90946 0.91534 1.24926 0.94422 0.95971 0.98351 1.69920 1.44505 1.07170 1.31084 0.86261 0.77967 0.78865 0.83388 1.19489 1.20533 1.20549 0.89520 0.88760 0.90518 0.88786 0.88166 0.89908 0.89033 0.84862 0.84446 0.82461 0.79944 0.92453 0.92336 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.75 9.57 36.01 0.34 -1.41 16 2 C 0.17 3.60 7.01 -81.59 -0.57 3.03 16 3 C -0.32 -6.19 6.13 -105.08 -0.64 -6.84 16 4 C 0.55 10.03 7.95 34.41 0.27 10.30 16 5 O -0.51 -10.11 14.09 -19.28 -0.27 -10.38 16 6 O -0.34 -5.28 9.78 -40.64 -0.40 -5.68 16 7 C 0.14 1.79 3.22 -26.80 -0.09 1.70 16 8 H 0.10 1.42 7.15 -51.93 -0.37 1.05 16 9 C -0.11 -0.94 6.81 -25.32 -0.17 -1.12 16 10 C -0.08 -0.60 6.77 -26.91 -0.18 -0.78 16 11 C -0.13 -1.39 6.16 -104.21 -0.64 -2.03 16 12 C -0.07 -0.61 10.17 -39.27 -0.40 -1.01 16 13 C -0.17 -1.42 10.12 -39.46 -0.40 -1.82 16 14 C 0.10 1.08 11.18 -17.61 -0.20 0.88 16 15 N -0.46 -6.67 10.35 -9.19 -0.10 -6.77 16 16 C 0.10 1.34 7.00 -82.03 -0.57 0.77 16 17 C 0.08 1.49 11.87 -16.97 -0.20 1.29 16 18 N -0.30 -6.60 12.50 30.87 0.39 -6.21 16 19 N -0.31 -7.16 3.56 -57.76 -0.21 -7.36 16 20 C 0.25 6.25 5.97 -5.19 -0.03 6.22 16 21 C -0.54 -14.55 9.39 -34.44 -0.32 -14.87 16 22 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 23 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 24 N -0.89 -24.58 13.29 55.43 0.74 -23.85 16 25 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 29 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.09 1.66 6.50 -51.93 -0.34 1.32 16 31 H 0.08 1.35 7.05 -51.93 -0.37 0.99 16 32 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.10 0.75 8.11 -51.93 -0.42 0.33 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 38 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.18 2.71 8.06 -52.49 -0.42 2.29 16 40 H 0.06 1.42 7.01 -51.93 -0.36 1.05 16 41 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 364.07 15.07 5.49 5.49 Total: -1.00 -32.73 364.07 -8.50 -41.23 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.21 Total: 1.74 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -3.90 Total: -3.98 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.82 Total: -44.19 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.67 Total: -16.06 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.73 -8.50 -41.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890156555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.451 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds