Wall clock time and date at job start Tue Mar 31 2020 15:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38125 * 126.29295 * 2 1 4 4 C 1.47294 * 126.42502 * 359.97438 * 3 2 1 5 5 O 1.21523 * 119.99944 * 0.02562 * 4 3 2 6 6 O 1.34755 * 119.99650 * 180.02562 * 4 3 2 7 7 C 1.45196 * 116.99865 * 179.97438 * 6 4 3 8 8 H 1.09002 * 110.26438 * 27.93754 * 7 6 4 9 9 C 1.54336 * 110.29582 * 149.99742 * 7 6 4 10 10 C 1.54364 * 102.39186 * 92.60216 * 9 7 6 11 11 C 1.51218 * 105.11829 * 26.28989 * 10 9 7 12 12 C 1.38746 * 130.68844 * 162.87771 * 11 10 9 13 13 C 1.38573 * 118.55688 * 179.97438 * 12 11 10 14 14 C 1.38233 * 118.99150 * 0.02562 * 13 12 11 15 15 N 1.31688 * 120.79966 * 359.96912 * 14 13 12 16 16 C 1.32301 * 122.03101 * 0.03876 * 15 14 13 17 17 C 1.41338 * 107.14688 * 179.97438 * 3 2 1 18 18 N 1.30434 * 108.01187 * 0.02562 * 17 3 2 19 19 N 1.34223 * 126.30005 * 179.97438 * 2 1 3 20 20 C 1.46503 * 125.74196 * 0.05494 * 19 2 1 21 21 C 1.50700 * 109.47138 * 269.98765 * 20 19 2 22 22 H 1.08004 * 119.99970 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00019 * 180.02562 * 21 20 19 24 24 N 1.31512 * 120.00160 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00257 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46937 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47630 * 119.99551 * 25 23 21 28 28 H 1.48500 * 109.47360 * 239.99970 * 25 23 21 29 29 H 1.09002 * 109.47189 * 270.01687 * 1 2 3 30 30 H 1.09004 * 109.47541 * 30.02717 * 1 2 3 31 31 H 1.09003 * 109.46906 * 150.02285 * 1 2 3 32 32 H 1.09008 * 110.81929 * 210.82355 * 9 7 6 33 33 H 1.08997 * 110.82371 * 334.36775 * 9 7 6 34 34 H 1.09002 * 110.31432 * 145.20824 * 10 9 7 35 35 H 1.09002 * 110.30667 * 267.38128 * 10 9 7 36 36 H 1.07998 * 120.72060 * 0.02562 * 12 11 10 37 37 H 1.08001 * 120.50871 * 179.97438 * 13 12 11 38 38 H 1.07990 * 119.60117 * 179.97438 * 14 13 12 39 39 H 1.08000 * 125.99131 * 180.26864 * 17 3 2 40 40 H 1.09006 * 109.46710 * 29.98371 * 20 19 2 41 41 H 1.09000 * 109.47127 * 149.98305 * 20 19 2 42 42 H 0.96997 * 120.00119 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8870 2.5197 -0.0005 5 8 0.7016 2.7873 -0.0006 6 8 2.8012 3.5097 -0.0010 7 6 2.2980 4.8717 -0.0021 8 1 1.3196 4.9130 0.4767 9 6 3.2881 5.8088 0.7214 10 6 4.1659 6.3232 -0.4396 11 6 3.2882 6.2326 -1.6677 12 6 3.4118 6.8299 -2.9139 13 6 2.4463 6.5679 -3.8727 14 6 1.3980 5.7247 -3.5550 15 7 1.3128 5.1750 -2.3614 16 6 2.2139 5.4001 -1.4192 17 6 3.6598 0.6497 0.0006 18 7 3.6340 -0.6544 0.0004 19 7 2.3016 -1.0817 0.0005 20 6 1.8499 -2.4754 0.0000 21 6 1.6942 -2.9535 1.4206 22 1 1.9106 -2.2862 2.2418 23 6 1.2767 -4.2432 1.6721 24 7 1.0137 -5.0560 0.6722 25 14 1.0844 -4.8362 3.4330 26 1 1.4404 -3.7378 4.3668 27 1 -0.3234 -5.2476 3.6659 28 1 1.9837 -5.9946 3.6663 29 1 -0.3634 0.0003 1.0277 30 1 -0.3634 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 2.7607 6.6325 1.2027 33 1 3.8872 5.2557 1.4446 34 1 4.4616 7.3571 -0.2611 35 1 5.0466 5.6917 -0.5565 36 1 4.2429 7.4841 -3.1321 37 1 2.5113 7.0164 -4.8531 38 1 0.6399 5.5141 -4.2947 39 1 4.5459 1.2671 0.0049 40 1 0.8915 -2.5465 -0.5144 41 1 2.5848 -3.0953 -0.5136 42 1 0.7196 -5.9632 0.8491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890156555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:10 Heat of formation + Delta-G solvation = 1.383606 kcal Electronic energy + Delta-G solvation = -26834.066865 eV Core-core repulsion = 22972.752137 eV Total energy + Delta-G solvation = -3861.314728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.48159 -41.89095 -40.58816 -37.87301 -36.18548 -35.83508 -33.92763 -33.46680 -32.86551 -30.30624 -29.59446 -28.58787 -28.02980 -25.54444 -24.52490 -24.12261 -22.77189 -22.05971 -21.51823 -20.52737 -19.00795 -18.78856 -18.18452 -17.53149 -17.29817 -16.89635 -16.56170 -16.32650 -16.06613 -15.80875 -15.52966 -15.12403 -14.57624 -14.53034 -14.37000 -14.24394 -13.91414 -13.81844 -13.75475 -13.62608 -13.34677 -13.16973 -13.00928 -12.73799 -12.71719 -12.35904 -12.34656 -12.10514 -11.87215 -11.85826 -11.82935 -11.28282 -10.77470 -10.71182 -10.35312 -10.22468 -9.81466 -9.68619 -8.39518 -6.55824 0.00452 0.32830 0.42080 1.16711 1.36512 1.37694 1.42578 1.52601 1.90147 2.22125 2.32060 2.82976 2.92423 2.93757 3.40420 3.63415 3.68882 3.75649 3.92718 3.94765 4.04911 4.08092 4.14423 4.28364 4.40117 4.47378 4.54184 4.60561 4.62201 4.74525 4.82120 4.85802 4.94268 4.96998 5.03875 5.07347 5.15513 5.20348 5.27503 5.45182 5.47754 5.58537 5.71905 5.75548 5.94100 6.52412 6.69542 6.88921 7.04297 7.15458 8.69010 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024528 B = 0.002596 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.268567 B =10782.493167 C =11076.704519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.160 3.840 3 C -0.321 4.321 4 C 0.553 3.447 5 O -0.534 6.534 6 O -0.336 6.336 7 C 0.128 3.872 8 H 0.081 0.919 9 C -0.105 4.105 10 C -0.073 4.073 11 C -0.133 4.133 12 C -0.072 4.072 13 C -0.153 4.153 14 C 0.074 3.926 15 N -0.506 5.506 16 C 0.058 3.942 17 C 0.097 3.903 18 N -0.332 5.332 19 N -0.332 5.332 20 C 0.265 3.735 21 C -0.556 4.556 22 H 0.053 0.947 23 C 0.024 3.976 24 N -0.917 5.917 25 Si 0.973 3.027 26 H -0.272 1.272 27 H -0.268 1.268 28 H -0.273 1.273 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.171 0.829 37 H 0.174 0.826 38 H 0.171 0.829 39 H 0.224 0.776 40 H 0.054 0.946 41 H 0.035 0.965 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.662 26.596 -5.037 27.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.023 3.977 3 C -0.334 4.334 4 C 0.399 3.601 5 O -0.424 6.424 6 O -0.253 6.253 7 C 0.072 3.928 8 H 0.099 0.901 9 C -0.143 4.143 10 C -0.110 4.110 11 C -0.135 4.135 12 C -0.098 4.098 13 C -0.173 4.173 14 C -0.084 4.084 15 N -0.216 5.216 16 C -0.079 4.079 17 C -0.090 4.090 18 N -0.152 5.152 19 N -0.109 5.109 20 C 0.147 3.853 21 C -0.594 4.594 22 H 0.071 0.929 23 C -0.177 4.177 24 N -0.554 5.554 25 Si 0.797 3.203 26 H -0.196 1.196 27 H -0.193 1.193 28 H -0.198 1.198 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.116 0.884 36 H 0.188 0.812 37 H 0.191 0.809 38 H 0.188 0.812 39 H 0.240 0.760 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.247 24.695 -4.907 25.718 hybrid contribution -0.395 0.259 0.255 0.537 sum 4.852 24.953 -4.651 25.843 Atomic orbital electron populations 1.20630 0.85270 1.04356 1.04487 1.21918 0.96040 0.86374 0.93356 1.19063 0.94010 0.89863 1.30503 1.19870 0.83633 0.85049 0.71500 1.90758 1.18569 1.84488 1.48615 1.86623 1.38806 1.15541 1.84310 1.22317 1.00597 0.78666 0.91228 0.90084 1.22553 0.96515 0.97411 0.97773 1.21097 0.97008 1.04399 0.88523 1.21849 0.96749 0.97236 0.97669 1.21550 0.99459 0.97911 0.90846 1.22546 0.94443 0.98373 1.01910 1.23125 0.98739 0.94090 0.92400 1.66796 1.29187 1.23163 1.02443 1.22125 0.92736 0.97212 0.95859 1.24522 0.97660 0.91289 0.95531 1.77151 0.98163 1.14019 1.25819 1.49175 1.03348 1.07863 1.50486 1.19474 0.95529 0.71820 0.98459 1.21408 1.48020 0.98558 0.91396 0.92869 1.25730 0.93755 0.95876 1.02347 1.69998 1.44782 1.07641 1.33021 0.85278 0.78461 0.78206 0.78384 1.19648 1.19315 1.19843 0.89062 0.88228 0.90346 0.86634 0.87175 0.86681 0.88431 0.81170 0.80898 0.81224 0.75957 0.92806 0.94727 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.36 9.57 71.24 0.68 -2.68 16 2 C 0.16 6.83 7.01 42.17 0.30 7.13 16 3 C -0.32 -12.66 6.13 -20.16 -0.12 -12.78 16 4 C 0.55 20.41 7.95 70.20 0.56 20.97 16 5 O -0.53 -21.56 14.09 19.76 0.28 -21.28 16 6 O -0.34 -10.27 9.78 -56.66 -0.55 -10.83 16 7 C 0.13 3.25 3.22 30.55 0.10 3.35 16 8 H 0.08 2.34 7.15 -2.39 -0.02 2.33 16 9 C -0.11 -1.50 6.81 31.51 0.21 -1.28 16 10 C -0.07 -0.86 6.77 30.48 0.21 -0.65 16 11 C -0.13 -2.43 6.16 -19.60 -0.12 -2.55 16 12 C -0.07 -0.99 10.17 22.47 0.23 -0.77 16 13 C -0.15 -2.22 10.12 22.35 0.23 -1.99 16 14 C 0.07 1.59 11.18 84.71 0.95 2.54 16 15 N -0.51 -15.10 10.35 -182.98 -1.89 -16.99 16 16 C 0.06 1.52 7.00 42.72 0.30 1.82 16 17 C 0.10 3.61 11.87 85.66 1.02 4.62 16 18 N -0.33 -14.94 12.50 -56.25 -0.70 -15.65 16 19 N -0.33 -15.76 3.56 -336.64 -1.20 -16.96 16 20 C 0.27 13.80 5.97 85.63 0.51 14.31 16 21 C -0.56 -30.68 9.39 25.60 0.24 -30.44 16 22 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 23 C 0.02 1.32 5.46 84.65 0.46 1.78 16 24 N -0.92 -51.25 13.29 21.45 0.28 -50.96 16 25 Si 0.97 42.66 29.54 68.60 2.03 44.69 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 28 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 29 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 30 H 0.10 3.61 6.50 -2.39 -0.02 3.59 16 31 H 0.08 2.87 7.05 -2.39 -0.02 2.86 16 32 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.11 1.36 8.11 -2.39 -0.02 1.34 16 34 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 37 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 38 H 0.17 2.85 8.06 -2.92 -0.02 2.83 16 39 H 0.22 6.13 8.06 -2.91 -0.02 6.11 16 40 H 0.05 2.78 7.01 -2.38 -0.02 2.77 16 41 H 0.03 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -73.74 364.07 5.03 -68.70 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 1.05 Total: 15.91 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 5.74 Total: 3.37 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -3.51 Total: -100.56 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.28 Total: -32.11 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -73.74 5.03 -68.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890156555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.088 kcal (2) G-P(sol) polarization free energy of solvation -73.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds