Wall clock time and date at job start Tue Mar 31 2020 15:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38125 * 126.29731 * 2 1 4 4 C 1.47282 * 126.42661 * 359.97438 * 3 2 1 5 5 O 1.21527 * 120.00123 * 359.97438 * 4 3 2 6 6 O 1.34752 * 120.00258 * 180.02562 * 4 3 2 7 7 C 1.45201 * 117.00043 * 180.02562 * 6 4 3 8 8 H 1.08996 * 110.26039 * 329.39529 * 7 6 4 9 9 C 1.54598 * 110.27154 * 207.25094 * 7 6 4 10 10 C 1.54370 * 102.27011 * 214.71354 * 9 7 6 11 11 C 1.51224 * 105.20323 * 26.31359 * 10 9 7 12 12 C 1.38737 * 130.69237 * 162.78628 * 11 10 9 13 13 C 1.38569 * 118.56051 * 180.02562 * 12 11 10 14 14 C 1.38233 * 118.98867 * 0.02562 * 13 12 11 15 15 N 1.31688 * 120.80025 * 0.02562 * 14 13 12 16 16 C 1.32290 * 122.03110 * 359.94959 * 15 14 13 17 17 C 1.41339 * 107.14394 * 180.24576 * 3 2 1 18 18 N 1.30426 * 108.01538 * 359.58792 * 17 3 2 19 19 N 1.34225 * 126.29340 * 180.02562 * 2 1 3 20 20 C 1.46500 * 125.74479 * 359.97438 * 19 2 1 21 21 C 1.50710 * 109.47050 * 89.99751 * 20 19 2 22 22 H 1.08000 * 119.99895 * 0.02562 * 21 20 19 23 23 C 1.37873 * 119.99876 * 179.97438 * 21 20 19 24 24 N 1.31513 * 120.00054 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99883 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47539 * 60.00015 * 25 23 21 27 27 H 1.48504 * 109.47284 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46971 * 299.99916 * 25 23 21 29 29 H 1.08994 * 109.47801 * 89.97579 * 1 2 3 30 30 H 1.09001 * 109.47247 * 209.97874 * 1 2 3 31 31 H 1.09004 * 109.46726 * 329.97190 * 1 2 3 32 32 H 1.09002 * 110.90880 * 96.51624 * 9 7 6 33 33 H 1.09005 * 110.85602 * 332.88679 * 9 7 6 34 34 H 1.09002 * 110.31468 * 267.35348 * 10 9 7 35 35 H 1.09004 * 110.31281 * 145.27161 * 10 9 7 36 36 H 1.08000 * 120.71712 * 0.05772 * 12 11 10 37 37 H 1.08006 * 120.51014 * 179.97438 * 13 12 11 38 38 H 1.07998 * 119.59865 * 179.97438 * 14 13 12 39 39 H 1.08008 * 125.99028 * 179.76357 * 17 3 2 40 40 H 1.08994 * 109.46901 * 209.99812 * 20 19 2 41 41 H 1.09000 * 109.47171 * 330.00159 * 20 19 2 42 42 H 0.96996 * 120.00193 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8873 2.5196 -0.0005 5 8 0.7018 2.7873 -0.0015 6 8 2.8015 3.5096 -0.0010 7 6 2.2982 4.8716 -0.0009 8 1 1.3417 4.9206 -0.5211 9 6 3.3217 5.8208 -0.6654 10 6 3.1468 7.1173 0.1540 11 6 2.6382 6.6670 1.5050 12 6 2.6009 7.3286 2.7240 13 6 2.0719 6.6673 3.8207 14 6 1.6023 5.3768 3.6625 15 7 1.6545 4.7792 2.4902 16 6 2.1515 5.3767 1.4196 17 6 3.6598 0.6495 -0.0058 18 7 3.6339 -0.6545 -0.0001 19 7 2.3015 -1.0818 -0.0005 20 6 1.8497 -2.4754 -0.0006 21 6 1.6942 -2.9530 -1.4215 22 1 1.9107 -2.2854 -2.2423 23 6 1.2766 -4.2426 -1.6735 24 7 1.0135 -5.0558 -0.6740 25 14 1.0846 -4.8348 -3.4347 26 1 2.3904 -4.7373 -4.1349 27 1 0.6265 -6.2474 -3.4349 28 1 0.0834 -3.9902 -4.1345 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5143 32 1 3.0734 5.9884 -1.7135 33 1 4.3348 5.4318 -0.5636 34 1 2.4193 7.7725 -0.3251 35 1 4.1032 7.6292 0.2611 36 1 2.9757 8.3373 2.8159 37 1 2.0278 7.1523 4.7847 38 1 1.1884 4.8520 4.5108 39 1 4.5461 1.2668 -0.0109 40 1 2.5845 -3.0956 0.5128 41 1 0.8912 -2.5467 0.5136 42 1 0.7193 -5.9629 -0.8512 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890156556.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:16 Heat of formation + Delta-G solvation = 19.095497 kcal Electronic energy + Delta-G solvation = -26794.886268 eV Core-core repulsion = 22934.339586 eV Total energy + Delta-G solvation = -3860.546683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.14270 -40.70550 -39.30258 -36.73702 -35.28336 -33.88328 -32.66808 -32.09355 -31.17933 -29.56873 -28.14531 -27.09492 -26.60713 -23.81748 -23.65192 -22.63123 -21.88853 -21.05337 -20.22516 -18.85474 -17.47469 -17.23548 -16.77417 -16.70813 -16.11872 -15.73617 -15.08483 -14.90265 -14.83571 -14.48700 -14.15848 -13.77135 -13.74370 -13.35694 -13.08407 -12.87698 -12.55549 -12.51218 -12.31075 -12.26705 -12.08150 -11.98338 -11.77166 -11.49676 -11.31435 -11.13351 -10.86293 -10.69853 -10.38303 -10.24068 -9.97977 -9.94667 -9.71565 -9.37576 -9.01237 -8.69998 -8.58866 -7.99439 -6.32824 -4.40840 0.81254 1.05506 2.02466 2.78414 2.85285 3.20890 3.24833 3.27899 3.43756 3.59161 3.67785 3.80289 4.10239 4.25040 4.44120 4.59040 4.65454 4.78615 4.83581 4.98560 5.02304 5.18405 5.21769 5.24369 5.34950 5.43591 5.48215 5.55137 5.60582 5.69324 5.80226 5.87085 5.91993 6.04279 6.10981 6.42962 6.43856 6.45565 6.78373 6.86810 6.91653 7.19108 7.55685 7.76151 7.77972 7.85275 8.28493 8.42109 8.64281 9.25965 10.75430 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.025494 B = 0.002569 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.049252 B =10898.056331 C =11273.437015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.172 3.828 3 C -0.314 4.314 4 C 0.554 3.446 5 O -0.520 6.520 6 O -0.341 6.341 7 C 0.141 3.859 8 H 0.107 0.893 9 C -0.112 4.112 10 C -0.076 4.076 11 C -0.147 4.147 12 C -0.066 4.066 13 C -0.171 4.171 14 C 0.103 3.897 15 N -0.457 5.457 16 C 0.107 3.893 17 C 0.079 3.921 18 N -0.298 5.298 19 N -0.312 5.312 20 C 0.251 3.749 21 C -0.541 4.541 22 H 0.065 0.935 23 C 0.068 3.932 24 N -0.890 5.890 25 Si 0.909 3.091 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.273 1.273 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.158 0.842 39 H 0.183 0.817 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 25.051 4.973 25.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.034 3.966 3 C -0.328 4.328 4 C 0.401 3.599 5 O -0.410 6.410 6 O -0.258 6.258 7 C 0.084 3.916 8 H 0.125 0.875 9 C -0.149 4.149 10 C -0.113 4.113 11 C -0.149 4.149 12 C -0.092 4.092 13 C -0.191 4.191 14 C -0.054 4.054 15 N -0.165 5.165 16 C -0.031 4.031 17 C -0.108 4.108 18 N -0.117 5.117 19 N -0.088 5.088 20 C 0.134 3.866 21 C -0.579 4.579 22 H 0.083 0.917 23 C -0.136 4.136 24 N -0.527 5.527 25 Si 0.735 3.265 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.198 1.198 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.175 0.825 39 H 0.200 0.800 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.653 22.817 4.959 23.500 hybrid contribution -0.341 1.203 -0.594 1.385 sum 2.311 24.021 4.365 24.523 Atomic orbital electron populations 1.20614 0.86603 1.04050 1.04068 1.21429 0.94942 0.86420 0.93785 1.18809 0.93708 0.89277 1.30968 1.19988 0.83505 0.84846 0.71534 1.90746 1.17813 1.84194 1.48216 1.86659 1.39611 1.14597 1.84945 1.22155 0.99600 0.79707 0.90127 0.87537 1.22502 1.00252 0.92555 0.99636 1.20956 1.02026 0.97602 0.90759 1.21328 1.00911 0.96516 0.96160 1.21022 0.97119 0.99880 0.91212 1.22123 1.00605 0.96693 0.99674 1.22747 0.95978 0.92207 0.94503 1.66898 1.13142 1.37919 0.98577 1.22043 0.94369 0.91882 0.94805 1.23891 0.96645 0.92122 0.98142 1.77195 0.98284 1.12326 1.23938 1.49392 1.02610 1.08252 1.48533 1.19883 0.96490 0.70713 0.99503 1.21210 1.47593 0.98188 0.90946 0.91653 1.24919 0.94422 0.95955 0.98325 1.69902 1.44379 1.07219 1.31199 0.86371 0.78892 0.77740 0.83465 1.19869 1.20870 1.19846 0.89606 0.90554 0.88785 0.88736 0.88751 0.89352 0.89606 0.84892 0.84470 0.82470 0.79971 0.92359 0.92481 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.75 9.57 36.01 0.34 -1.41 16 2 C 0.17 3.63 7.01 -81.59 -0.57 3.05 16 3 C -0.31 -6.24 6.13 -105.08 -0.64 -6.89 16 4 C 0.55 10.26 7.95 34.41 0.27 10.53 16 5 O -0.52 -10.25 14.13 -19.29 -0.27 -10.52 16 6 O -0.34 -5.40 9.78 -40.63 -0.40 -5.80 16 7 C 0.14 1.80 3.18 -26.66 -0.08 1.72 16 8 H 0.11 1.42 7.23 -51.93 -0.38 1.04 16 9 C -0.11 -0.92 6.83 -25.17 -0.17 -1.09 16 10 C -0.08 -0.52 6.76 -26.91 -0.18 -0.70 16 11 C -0.15 -1.46 6.16 -104.20 -0.64 -2.11 16 12 C -0.07 -0.56 10.17 -39.27 -0.40 -0.95 16 13 C -0.17 -1.46 10.12 -39.46 -0.40 -1.86 16 14 C 0.10 1.16 11.18 -17.61 -0.20 0.96 16 15 N -0.46 -6.83 10.35 -9.19 -0.10 -6.92 16 16 C 0.11 1.43 7.00 -82.04 -0.57 0.86 16 17 C 0.08 1.52 11.87 -16.97 -0.20 1.32 16 18 N -0.30 -6.69 12.50 30.87 0.39 -6.31 16 19 N -0.31 -7.23 3.56 -57.76 -0.21 -7.44 16 20 C 0.25 6.32 5.97 -5.19 -0.03 6.28 16 21 C -0.54 -14.65 9.39 -34.44 -0.32 -14.97 16 22 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 23 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 24 N -0.89 -24.68 13.29 55.43 0.74 -23.94 16 25 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 29 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.08 1.36 7.05 -51.93 -0.37 0.99 16 31 H 0.09 1.67 6.51 -51.93 -0.34 1.33 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.77 8.12 -51.93 -0.42 0.35 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 37 H 0.14 0.74 8.06 -52.48 -0.42 0.31 16 38 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.18 2.79 8.06 -52.48 -0.42 2.37 16 40 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.06 1.42 7.01 -51.93 -0.36 1.05 16 42 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 364.17 15.07 5.49 5.49 Total: -1.00 -32.95 364.17 -8.50 -41.45 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.22 Total: 1.68 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -3.90 Total: -3.53 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.82 Total: -44.61 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.67 Total: -16.32 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.95 -8.50 -41.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890156556.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.548 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds