Wall clock time and date at job start Tue Mar 31 2020 15:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38125 * 126.29731 * 2 1 4 4 C 1.47282 * 126.42661 * 359.97438 * 3 2 1 5 5 O 1.21527 * 120.00123 * 359.97438 * 4 3 2 6 6 O 1.34752 * 120.00258 * 180.02562 * 4 3 2 7 7 C 1.45201 * 117.00043 * 180.02562 * 6 4 3 8 8 H 1.08996 * 110.26039 * 329.39529 * 7 6 4 9 9 C 1.54598 * 110.27154 * 207.25094 * 7 6 4 10 10 C 1.54370 * 102.27011 * 214.71354 * 9 7 6 11 11 C 1.51224 * 105.20323 * 26.31359 * 10 9 7 12 12 C 1.38737 * 130.69237 * 162.78628 * 11 10 9 13 13 C 1.38569 * 118.56051 * 180.02562 * 12 11 10 14 14 C 1.38233 * 118.98867 * 0.02562 * 13 12 11 15 15 N 1.31688 * 120.80025 * 0.02562 * 14 13 12 16 16 C 1.32290 * 122.03110 * 359.94959 * 15 14 13 17 17 C 1.41339 * 107.14394 * 180.24576 * 3 2 1 18 18 N 1.30426 * 108.01538 * 359.58792 * 17 3 2 19 19 N 1.34225 * 126.29340 * 180.02562 * 2 1 3 20 20 C 1.46500 * 125.74479 * 359.97438 * 19 2 1 21 21 C 1.50710 * 109.47050 * 89.99751 * 20 19 2 22 22 H 1.08000 * 119.99895 * 0.02562 * 21 20 19 23 23 C 1.37873 * 119.99876 * 179.97438 * 21 20 19 24 24 N 1.31513 * 120.00054 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99883 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47539 * 60.00015 * 25 23 21 27 27 H 1.48504 * 109.47284 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46971 * 299.99916 * 25 23 21 29 29 H 1.08994 * 109.47801 * 89.97579 * 1 2 3 30 30 H 1.09001 * 109.47247 * 209.97874 * 1 2 3 31 31 H 1.09004 * 109.46726 * 329.97190 * 1 2 3 32 32 H 1.09002 * 110.90880 * 96.51624 * 9 7 6 33 33 H 1.09005 * 110.85602 * 332.88679 * 9 7 6 34 34 H 1.09002 * 110.31468 * 267.35348 * 10 9 7 35 35 H 1.09004 * 110.31281 * 145.27161 * 10 9 7 36 36 H 1.08000 * 120.71712 * 0.05772 * 12 11 10 37 37 H 1.08006 * 120.51014 * 179.97438 * 13 12 11 38 38 H 1.07998 * 119.59865 * 179.97438 * 14 13 12 39 39 H 1.08008 * 125.99028 * 179.76357 * 17 3 2 40 40 H 1.08994 * 109.46901 * 209.99812 * 20 19 2 41 41 H 1.09000 * 109.47171 * 330.00159 * 20 19 2 42 42 H 0.96996 * 120.00193 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8873 2.5196 -0.0005 5 8 0.7018 2.7873 -0.0015 6 8 2.8015 3.5096 -0.0010 7 6 2.2982 4.8716 -0.0009 8 1 1.3417 4.9206 -0.5211 9 6 3.3217 5.8208 -0.6654 10 6 3.1468 7.1173 0.1540 11 6 2.6382 6.6670 1.5050 12 6 2.6009 7.3286 2.7240 13 6 2.0719 6.6673 3.8207 14 6 1.6023 5.3768 3.6625 15 7 1.6545 4.7792 2.4902 16 6 2.1515 5.3767 1.4196 17 6 3.6598 0.6495 -0.0058 18 7 3.6339 -0.6545 -0.0001 19 7 2.3015 -1.0818 -0.0005 20 6 1.8497 -2.4754 -0.0006 21 6 1.6942 -2.9530 -1.4215 22 1 1.9107 -2.2854 -2.2423 23 6 1.2766 -4.2426 -1.6735 24 7 1.0135 -5.0558 -0.6740 25 14 1.0846 -4.8348 -3.4347 26 1 2.3904 -4.7373 -4.1349 27 1 0.6265 -6.2474 -3.4349 28 1 0.0834 -3.9902 -4.1345 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5143 32 1 3.0734 5.9884 -1.7135 33 1 4.3348 5.4318 -0.5636 34 1 2.4193 7.7725 -0.3251 35 1 4.1032 7.6292 0.2611 36 1 2.9757 8.3373 2.8159 37 1 2.0278 7.1523 4.7847 38 1 1.1884 4.8520 4.5108 39 1 4.5461 1.2668 -0.0109 40 1 2.5845 -3.0956 0.5128 41 1 0.8912 -2.5467 0.5136 42 1 0.7193 -5.9629 -0.8512 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890156556.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:15 Heat of formation + Delta-G solvation = -0.003992 kcal Electronic energy + Delta-G solvation = -26795.714484 eV Core-core repulsion = 22934.339586 eV Total energy + Delta-G solvation = -3861.374899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.46040 -41.86706 -40.57277 -37.80156 -36.32072 -35.83407 -33.92242 -33.42549 -32.85162 -30.30692 -29.60233 -28.57712 -27.96434 -25.51710 -24.53611 -24.05967 -22.77558 -21.99073 -21.60121 -20.49475 -18.98088 -18.75954 -18.16810 -17.69005 -17.26702 -16.86196 -16.63072 -16.31913 -16.02949 -15.71197 -15.52904 -15.11784 -14.56145 -14.53720 -14.36159 -14.19600 -13.85970 -13.75084 -13.68467 -13.62009 -13.29911 -13.16210 -13.02796 -12.91696 -12.69468 -12.63774 -12.31392 -12.03778 -11.89708 -11.86067 -11.82111 -11.25363 -10.76448 -10.70227 -10.34347 -10.19580 -9.75979 -9.66689 -8.38638 -6.55250 0.05134 0.34274 0.44495 1.17955 1.37819 1.39594 1.43170 1.50812 1.92517 2.25175 2.32583 2.80105 2.93836 2.95006 3.37879 3.64375 3.66219 3.79566 3.92530 3.93942 4.05867 4.07382 4.13481 4.25633 4.39234 4.46529 4.53588 4.59045 4.63400 4.75378 4.79859 4.86393 4.95309 4.96572 5.02404 5.07836 5.14523 5.20210 5.26128 5.47518 5.48712 5.60122 5.72484 5.75867 5.95531 6.52494 6.70647 6.91917 7.06497 7.15803 8.69451 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.025494 B = 0.002569 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.049252 B =10898.056331 C =11273.437015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.160 3.840 3 C -0.320 4.320 4 C 0.559 3.441 5 O -0.537 6.537 6 O -0.340 6.340 7 C 0.129 3.871 8 H 0.092 0.908 9 C -0.104 4.104 10 C -0.068 4.068 11 C -0.143 4.143 12 C -0.067 4.067 13 C -0.158 4.158 14 C 0.076 3.924 15 N -0.511 5.511 16 C 0.063 3.937 17 C 0.096 3.904 18 N -0.333 5.333 19 N -0.333 5.333 20 C 0.266 3.734 21 C -0.558 4.558 22 H 0.053 0.947 23 C 0.025 3.975 24 N -0.916 5.916 25 Si 0.972 3.028 26 H -0.273 1.273 27 H -0.273 1.273 28 H -0.266 1.266 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.172 0.828 37 H 0.172 0.828 38 H 0.167 0.833 39 H 0.222 0.778 40 H 0.034 0.966 41 H 0.054 0.946 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.567 28.158 4.378 28.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.023 3.977 3 C -0.333 4.333 4 C 0.406 3.594 5 O -0.429 6.429 6 O -0.257 6.257 7 C 0.073 3.927 8 H 0.110 0.890 9 C -0.142 4.142 10 C -0.105 4.105 11 C -0.145 4.145 12 C -0.092 4.092 13 C -0.178 4.178 14 C -0.081 4.081 15 N -0.220 5.220 16 C -0.074 4.074 17 C -0.091 4.091 18 N -0.152 5.152 19 N -0.109 5.109 20 C 0.148 3.852 21 C -0.596 4.596 22 H 0.072 0.928 23 C -0.177 4.177 24 N -0.554 5.554 25 Si 0.796 3.204 26 H -0.198 1.198 27 H -0.197 1.197 28 H -0.190 1.190 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.134 0.866 33 H 0.115 0.885 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.190 0.810 37 H 0.190 0.810 38 H 0.184 0.816 39 H 0.238 0.762 40 H 0.052 0.948 41 H 0.072 0.928 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.538 25.955 4.370 26.557 hybrid contribution -0.593 0.412 -0.299 0.782 sum 2.944 26.367 4.071 26.842 Atomic orbital electron populations 1.20620 0.85247 1.04340 1.04441 1.21908 0.96029 0.86331 0.93403 1.19073 0.93927 0.90027 1.30296 1.19746 0.83513 0.84942 0.71184 1.90727 1.18600 1.84572 1.48956 1.86610 1.38937 1.15826 1.84292 1.22671 1.00551 0.78400 0.91101 0.89048 1.22617 0.98899 0.91912 1.00738 1.21059 1.03837 0.96966 0.88665 1.21723 0.99541 0.95139 0.98099 1.21524 0.96117 1.01328 0.90261 1.22508 0.98477 0.95375 1.01415 1.23084 0.97170 0.93890 0.93953 1.66767 1.14909 1.40151 1.00153 1.22220 0.96729 0.93884 0.94575 1.24490 0.97702 0.91306 0.95625 1.77145 0.98212 1.13987 1.25868 1.49173 1.03322 1.07868 1.50550 1.19459 0.95494 0.71817 0.98437 1.21358 1.48210 0.98604 0.91408 0.92830 1.25733 0.93732 0.95845 1.02375 1.69987 1.44641 1.07634 1.33152 0.85389 0.78863 0.77689 0.78495 1.19810 1.19739 1.19045 0.89089 0.90377 0.88223 0.86601 0.88484 0.87368 0.86828 0.81021 0.81006 0.81601 0.76202 0.94802 0.92811 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.36 9.57 71.24 0.68 -2.67 16 2 C 0.16 6.93 7.01 42.17 0.30 7.22 16 3 C -0.32 -12.88 6.13 -20.16 -0.12 -13.00 16 4 C 0.56 20.98 7.95 70.20 0.56 21.54 16 5 O -0.54 -21.73 14.13 19.75 0.28 -21.45 16 6 O -0.34 -10.74 9.78 -56.63 -0.55 -11.29 16 7 C 0.13 3.24 3.18 30.64 0.10 3.34 16 8 H 0.09 2.49 7.23 -2.39 -0.02 2.47 16 9 C -0.10 -1.47 6.83 31.60 0.22 -1.25 16 10 C -0.07 -0.69 6.76 30.48 0.21 -0.48 16 11 C -0.14 -2.49 6.16 -19.59 -0.12 -2.61 16 12 C -0.07 -0.88 10.17 22.47 0.23 -0.65 16 13 C -0.16 -2.30 10.12 22.35 0.23 -2.07 16 14 C 0.08 1.69 11.18 84.71 0.95 2.64 16 15 N -0.51 -15.55 10.35 -182.97 -1.89 -17.45 16 16 C 0.06 1.66 7.00 42.72 0.30 1.96 16 17 C 0.10 3.67 11.87 85.66 1.02 4.69 16 18 N -0.33 -15.25 12.50 -56.25 -0.70 -15.96 16 19 N -0.33 -15.98 3.56 -336.65 -1.20 -17.17 16 20 C 0.27 13.96 5.97 85.64 0.51 14.47 16 21 C -0.56 -30.97 9.39 25.60 0.24 -30.73 16 22 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 23 C 0.02 1.34 5.46 84.65 0.46 1.80 16 24 N -0.92 -51.51 13.29 21.45 0.28 -51.23 16 25 Si 0.97 42.76 29.54 68.60 2.03 44.78 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 28 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 29 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 30 H 0.08 2.89 7.05 -2.39 -0.02 2.87 16 31 H 0.10 3.64 6.51 -2.39 -0.02 3.62 16 32 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.10 1.33 8.12 -2.38 -0.02 1.31 16 34 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 37 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 38 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 39 H 0.22 6.40 8.06 -2.91 -0.02 6.38 16 40 H 0.03 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.05 2.80 7.01 -2.39 -0.02 2.79 16 42 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -74.44 364.17 5.03 -69.41 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 1.05 Total: 16.17 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 5.74 Total: 4.18 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -3.51 Total: -101.80 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.27 Total: -32.74 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -74.44 5.03 -69.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890156556.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.403 kcal (2) G-P(sol) polarization free energy of solvation -74.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds