Wall clock time and date at job start Tue Mar 31 2020 14:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39325 * 119.12306 * 2 1 4 4 C 1.36574 * 119.91774 * 179.74475 * 3 2 1 5 5 C 1.50695 * 120.91784 * 180.28063 * 4 3 2 6 6 C 1.40813 * 118.15459 * 0.25118 * 4 3 2 7 7 C 1.40325 * 121.27576 * 180.02562 * 6 4 3 8 8 C 1.37806 * 119.46053 * 179.97438 * 7 6 4 9 9 N 1.39678 * 119.72690 * 180.02562 * 8 7 6 10 10 C 1.34775 * 120.00175 * 144.81412 * 9 8 7 11 11 O 1.21376 * 120.00273 * 4.56087 * 10 9 8 12 12 C 1.49351 * 120.00052 * 184.55806 * 10 9 8 13 13 O 1.21360 * 119.99975 * 0.02562 * 12 10 9 14 14 N 1.34775 * 120.00052 * 179.97438 * 12 10 9 15 15 C 1.46493 * 119.99954 * 180.02562 * 14 12 10 16 16 C 1.50697 * 109.47104 * 180.02562 * 15 14 12 17 17 H 1.08005 * 119.99950 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00098 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99973 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 120.00151 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.47244 * 89.99691 * 20 18 16 22 22 H 1.48500 * 109.47275 * 210.00244 * 20 18 16 23 23 H 1.48508 * 109.46975 * 330.00298 * 20 18 16 24 24 C 1.40039 * 120.54984 * 0.02681 * 8 7 6 25 25 C 1.35882 * 120.99433 * 359.97228 * 24 8 7 26 26 C 1.40663 * 120.00323 * 0.02562 * 25 24 8 27 27 N 1.31084 * 119.11462 * 180.29966 * 2 1 3 28 28 H 1.08999 * 109.46760 * 89.99617 * 1 2 3 29 29 H 1.08996 * 109.47052 * 209.99830 * 1 2 3 30 30 H 1.09003 * 109.46940 * 330.00091 * 1 2 3 31 31 H 1.07999 * 120.04221 * 0.02785 * 3 2 1 32 32 H 1.08997 * 109.47412 * 90.00095 * 5 4 3 33 33 H 1.09007 * 109.46979 * 209.99697 * 5 4 3 34 34 H 1.09002 * 109.47631 * 329.99160 * 5 4 3 35 35 H 1.07996 * 120.26849 * 359.96721 * 7 6 4 36 36 H 0.97003 * 120.00130 * 324.81384 * 9 8 7 37 37 H 0.97006 * 119.99826 * 0.02562 * 14 12 10 38 38 H 1.09000 * 109.47335 * 299.99625 * 15 14 12 39 39 H 1.09005 * 109.47344 * 59.99994 * 15 14 12 40 40 H 0.96994 * 119.99795 * 179.97438 * 19 18 16 41 41 H 1.08004 * 119.50434 * 179.97438 * 24 8 7 42 42 H 1.08004 * 119.99914 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2171 0.0000 4 6 3.5507 1.2361 0.0053 5 6 4.3069 2.5395 0.0117 6 6 4.2323 0.0039 0.0052 7 6 5.6344 -0.0531 0.0109 8 6 6.2629 -1.2795 0.0111 9 7 7.6582 -1.3426 0.0174 10 6 8.2852 -2.3275 0.6907 11 8 7.6385 -3.2064 1.2223 12 6 9.7758 -2.3376 0.7827 13 8 10.4225 -1.4587 0.2516 14 7 10.4028 -3.3222 1.4565 15 6 11.8649 -3.3317 1.5472 16 6 12.3107 -4.5285 2.3471 17 1 11.5782 -5.2134 2.7482 18 6 13.6539 -4.7493 2.5669 19 7 14.0429 -5.7935 3.2654 20 14 14.9209 -3.5654 1.8726 21 1 15.1895 -2.4914 2.8624 22 1 16.1793 -4.2996 1.5851 23 1 14.4012 -2.9637 0.6183 24 6 5.5143 -2.4629 0.0051 25 6 4.1558 -2.4316 -0.0006 26 6 3.4807 -1.1976 -0.0009 27 7 2.1448 -1.1452 -0.0060 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6315 2.1444 0.0005 32 1 4.4854 2.8510 1.0409 33 1 5.2611 2.4085 -0.4988 34 1 3.7216 3.3018 -0.5024 35 1 6.2161 0.8568 0.0151 36 1 8.1760 -0.6777 -0.4628 37 1 9.8858 -4.0245 1.8813 38 1 12.2907 -3.3858 0.5453 39 1 12.2045 -2.4194 2.0376 40 1 14.9878 -5.9490 3.4197 41 1 6.0243 -3.4150 0.0049 42 1 3.5944 -3.3542 -0.0048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890234410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:31 Heat of formation + Delta-G solvation = -18.406252 kcal Electronic energy + Delta-G solvation = -25902.818741 eV Core-core repulsion = 22040.645861 eV Total energy + Delta-G solvation = -3862.172880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.43135 -40.55295 -38.65325 -37.35662 -35.17418 -35.03098 -34.29444 -32.45101 -31.63871 -30.49386 -28.59522 -28.06734 -27.70205 -24.87794 -23.99563 -22.66314 -21.78072 -21.04580 -20.18482 -18.89733 -18.58999 -17.79213 -16.86317 -16.29696 -16.18395 -15.67650 -15.57457 -15.16360 -15.06557 -14.53662 -14.29769 -14.22697 -14.06148 -13.74988 -13.55164 -13.32812 -13.21240 -13.14100 -12.82633 -12.51596 -12.49256 -12.35026 -12.16679 -11.96784 -11.71049 -11.33709 -11.10422 -10.87203 -10.47268 -10.17222 -10.07059 -9.72190 -9.60501 -9.37625 -8.90205 -8.76932 -8.46678 -8.07819 -6.28505 -4.32736 0.08453 0.53784 1.48452 1.76945 2.39416 2.65969 3.20224 3.27711 3.32818 3.42304 3.80606 3.86396 3.94493 4.18752 4.25113 4.27859 4.44632 4.72526 4.77708 4.82831 4.97669 5.02638 5.05529 5.07985 5.15038 5.17072 5.24992 5.36710 5.42543 5.56038 5.67451 5.71390 5.85755 5.97264 6.03640 6.15647 6.32284 6.53598 6.63526 6.78375 6.86575 6.96300 7.20132 7.59400 7.72318 7.93151 8.29526 8.39740 8.71236 9.28549 10.83177 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.031022 B = 0.002117 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.356438 B =13220.212776 C =13892.673026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.153 3.847 3 C -0.175 4.175 4 C -0.025 4.025 5 C -0.120 4.120 6 C -0.085 4.085 7 C -0.131 4.131 8 C 0.158 3.842 9 N -0.651 5.651 10 C 0.511 3.489 11 O -0.498 6.498 12 C 0.494 3.506 13 O -0.537 6.537 14 N -0.662 5.662 15 C 0.218 3.782 16 C -0.550 4.550 17 H 0.083 0.917 18 C 0.080 3.920 19 N -0.887 5.887 20 Si 0.877 3.123 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.261 1.261 24 C -0.096 4.096 25 C -0.078 4.078 26 C 0.124 3.876 27 N -0.476 5.476 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.135 0.865 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.137 0.863 36 H 0.424 0.576 37 H 0.411 0.589 38 H 0.034 0.966 39 H 0.029 0.971 40 H 0.269 0.731 41 H 0.150 0.850 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.400 15.962 -8.556 30.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.000 4.000 3 C -0.195 4.195 4 C -0.033 4.033 5 C -0.177 4.177 6 C -0.088 4.088 7 C -0.152 4.152 8 C 0.063 3.937 9 N -0.298 5.298 10 C 0.294 3.706 11 O -0.371 6.371 12 C 0.273 3.727 13 O -0.416 6.416 14 N -0.311 5.311 15 C 0.096 3.904 16 C -0.587 4.587 17 H 0.101 0.899 18 C -0.125 4.125 19 N -0.524 5.524 20 Si 0.703 3.297 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.185 1.185 24 C -0.117 4.117 25 C -0.097 4.097 26 C 0.003 3.997 27 N -0.185 5.185 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.153 0.847 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.155 0.845 36 H 0.263 0.737 37 H 0.247 0.753 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.079 0.921 41 H 0.168 0.832 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -24.481 14.932 -8.429 29.888 hybrid contribution 1.286 1.280 -0.238 1.830 sum -23.194 16.211 -8.667 29.596 Atomic orbital electron populations 1.20759 0.88712 1.03590 1.03183 1.21421 0.97048 0.88129 0.93378 1.21539 0.94196 0.99231 1.04565 1.20117 0.93942 0.94591 0.94610 1.20881 1.00425 0.93107 1.03256 1.18381 0.93622 0.93564 1.03196 1.20919 0.93105 0.96621 1.04589 1.17751 0.82423 0.93958 0.99569 1.43215 1.04724 1.30968 1.50932 1.20809 0.89951 0.81584 0.78278 1.90755 1.67256 1.35168 1.43875 1.19664 0.86910 0.84201 0.81960 1.90732 1.66705 1.37118 1.47088 1.46131 1.10371 1.25098 1.49549 1.19733 0.74197 0.98459 0.97991 1.21042 0.93872 1.09001 1.34819 0.89876 1.24785 0.98210 0.95265 0.94230 1.69872 1.16644 1.27382 1.38473 0.86820 0.81118 0.81235 0.80519 1.19736 1.20734 1.18506 1.21142 0.93617 0.98674 0.98253 1.20682 0.93331 0.96610 0.99067 1.18854 0.89097 0.92802 0.98994 1.67841 1.08337 1.28753 1.13594 0.90257 0.90312 0.90627 0.84704 0.90102 0.90628 0.90678 0.84504 0.73731 0.75311 0.94826 0.95305 0.92084 0.83211 0.84133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.14 36.01 0.37 -0.27 16 2 C 0.15 1.46 6.78 -82.51 -0.56 0.90 16 3 C -0.18 -1.42 9.33 -39.78 -0.37 -1.80 16 4 C -0.02 -0.22 5.92 -104.25 -0.62 -0.84 16 5 C -0.12 -0.70 9.59 36.00 0.35 -0.35 16 6 C -0.08 -0.94 5.74 -106.81 -0.61 -1.56 16 7 C -0.13 -1.37 9.25 -38.96 -0.36 -1.73 16 8 C 0.16 1.91 6.28 -83.77 -0.53 1.38 16 9 N -0.65 -8.11 5.30 -10.31 -0.05 -8.17 16 10 C 0.51 7.93 7.72 -11.63 -0.09 7.84 16 11 O -0.50 -8.41 13.88 5.47 0.08 -8.33 16 12 C 0.49 9.02 7.89 -11.63 -0.09 8.93 16 13 O -0.54 -10.67 16.48 5.49 0.09 -10.58 16 14 N -0.66 -13.32 5.54 -61.95 -0.34 -13.67 16 15 C 0.22 5.11 4.50 -5.20 -0.02 5.09 16 16 C -0.55 -14.74 9.83 -34.44 -0.34 -15.08 16 17 H 0.08 2.35 7.84 -52.48 -0.41 1.94 16 18 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 19 N -0.89 -25.88 13.96 55.43 0.77 -25.10 16 20 Si 0.88 20.60 27.47 -169.99 -4.67 15.93 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 24 C -0.10 -1.21 8.59 -39.75 -0.34 -1.55 16 25 C -0.08 -0.94 9.96 -39.51 -0.39 -1.33 16 26 C 0.12 1.55 6.61 -84.81 -0.56 0.99 16 27 N -0.48 -5.77 10.23 -7.20 -0.07 -5.84 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16 31 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.41 6.52 -51.93 -0.34 0.07 16 34 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 35 H 0.14 1.10 6.45 -52.49 -0.34 0.76 16 36 H 0.42 4.50 8.29 -40.82 -0.34 4.16 16 37 H 0.41 7.87 7.79 -40.82 -0.32 7.55 16 38 H 0.03 0.81 7.20 -51.93 -0.37 0.44 16 39 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 40 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.15 1.99 6.18 -52.48 -0.32 1.66 16 42 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 360.07 15.07 5.43 5.43 Total: -1.00 -32.20 360.07 -8.00 -40.20 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -4.96 Total: 7.41 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -4.27 Total: 2.73 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.30 Total: -52.78 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.17 Total: -18.91 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.20 -8.00 -40.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890234410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.795 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds