Wall clock time and date at job start Tue Mar 31 2020 14:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39325 * 119.12306 * 2 1 4 4 C 1.36574 * 119.91774 * 179.74475 * 3 2 1 5 5 C 1.50695 * 120.91784 * 180.28063 * 4 3 2 6 6 C 1.40813 * 118.15459 * 0.25118 * 4 3 2 7 7 C 1.40325 * 121.27576 * 180.02562 * 6 4 3 8 8 C 1.37806 * 119.46053 * 179.97438 * 7 6 4 9 9 N 1.39678 * 119.72690 * 180.02562 * 8 7 6 10 10 C 1.34775 * 120.00175 * 144.81412 * 9 8 7 11 11 O 1.21376 * 120.00273 * 4.56087 * 10 9 8 12 12 C 1.49351 * 120.00052 * 184.55806 * 10 9 8 13 13 O 1.21360 * 119.99975 * 0.02562 * 12 10 9 14 14 N 1.34775 * 120.00052 * 179.97438 * 12 10 9 15 15 C 1.46493 * 119.99954 * 180.02562 * 14 12 10 16 16 C 1.50697 * 109.47104 * 180.02562 * 15 14 12 17 17 H 1.08005 * 119.99950 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00098 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99973 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 120.00151 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.47244 * 89.99691 * 20 18 16 22 22 H 1.48500 * 109.47275 * 210.00244 * 20 18 16 23 23 H 1.48508 * 109.46975 * 330.00298 * 20 18 16 24 24 C 1.40039 * 120.54984 * 0.02681 * 8 7 6 25 25 C 1.35882 * 120.99433 * 359.97228 * 24 8 7 26 26 C 1.40663 * 120.00323 * 0.02562 * 25 24 8 27 27 N 1.31084 * 119.11462 * 180.29966 * 2 1 3 28 28 H 1.08999 * 109.46760 * 89.99617 * 1 2 3 29 29 H 1.08996 * 109.47052 * 209.99830 * 1 2 3 30 30 H 1.09003 * 109.46940 * 330.00091 * 1 2 3 31 31 H 1.07999 * 120.04221 * 0.02785 * 3 2 1 32 32 H 1.08997 * 109.47412 * 90.00095 * 5 4 3 33 33 H 1.09007 * 109.46979 * 209.99697 * 5 4 3 34 34 H 1.09002 * 109.47631 * 329.99160 * 5 4 3 35 35 H 1.07996 * 120.26849 * 359.96721 * 7 6 4 36 36 H 0.97003 * 120.00130 * 324.81384 * 9 8 7 37 37 H 0.97006 * 119.99826 * 0.02562 * 14 12 10 38 38 H 1.09000 * 109.47335 * 299.99625 * 15 14 12 39 39 H 1.09005 * 109.47344 * 59.99994 * 15 14 12 40 40 H 0.96994 * 119.99795 * 179.97438 * 19 18 16 41 41 H 1.08004 * 119.50434 * 179.97438 * 24 8 7 42 42 H 1.08004 * 119.99914 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2171 0.0000 4 6 3.5507 1.2361 0.0053 5 6 4.3069 2.5395 0.0117 6 6 4.2323 0.0039 0.0052 7 6 5.6344 -0.0531 0.0109 8 6 6.2629 -1.2795 0.0111 9 7 7.6582 -1.3426 0.0174 10 6 8.2852 -2.3275 0.6907 11 8 7.6385 -3.2064 1.2223 12 6 9.7758 -2.3376 0.7827 13 8 10.4225 -1.4587 0.2516 14 7 10.4028 -3.3222 1.4565 15 6 11.8649 -3.3317 1.5472 16 6 12.3107 -4.5285 2.3471 17 1 11.5782 -5.2134 2.7482 18 6 13.6539 -4.7493 2.5669 19 7 14.0429 -5.7935 3.2654 20 14 14.9209 -3.5654 1.8726 21 1 15.1895 -2.4914 2.8624 22 1 16.1793 -4.2996 1.5851 23 1 14.4012 -2.9637 0.6183 24 6 5.5143 -2.4629 0.0051 25 6 4.1558 -2.4316 -0.0006 26 6 3.4807 -1.1976 -0.0009 27 7 2.1448 -1.1452 -0.0060 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6315 2.1444 0.0005 32 1 4.4854 2.8510 1.0409 33 1 5.2611 2.4085 -0.4988 34 1 3.7216 3.3018 -0.5024 35 1 6.2161 0.8568 0.0151 36 1 8.1760 -0.6777 -0.4628 37 1 9.8858 -4.0245 1.8813 38 1 12.2907 -3.3858 0.5453 39 1 12.2045 -2.4194 2.0376 40 1 14.9878 -5.9490 3.4197 41 1 6.0243 -3.4150 0.0049 42 1 3.5944 -3.3542 -0.0048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890234410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:30 Heat of formation + Delta-G solvation = -41.030683 kcal Electronic energy + Delta-G solvation = -25903.799810 eV Core-core repulsion = 22040.645861 eV Total energy + Delta-G solvation = -3863.153949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.39196 -41.64186 -40.00292 -38.38000 -36.59736 -35.74283 -35.60598 -34.43342 -32.40173 -31.30827 -30.38183 -28.74819 -28.46921 -26.22639 -24.88623 -23.95869 -23.09331 -21.95141 -21.43129 -20.26690 -19.51855 -18.83317 -18.53378 -17.57291 -17.29302 -16.99086 -16.73059 -16.49858 -15.97900 -15.85888 -15.55801 -15.28309 -14.99230 -14.83203 -14.50508 -14.44125 -14.22210 -14.07818 -13.84540 -13.78865 -13.42069 -13.15059 -13.05835 -13.01695 -12.75740 -12.70311 -12.59379 -12.30137 -11.92121 -11.70737 -11.25490 -11.06881 -10.93756 -10.78335 -10.46712 -10.20248 -9.57465 -8.95301 -8.40162 -6.49922 -0.71756 -0.30752 0.24434 0.93211 1.15892 1.36449 1.38437 1.49684 1.75904 2.09728 2.28487 2.57078 2.94731 3.01381 3.23279 3.33776 3.51017 3.61764 3.75988 3.95696 4.01448 4.18018 4.42727 4.48306 4.54578 4.63773 4.64667 4.76064 4.78042 4.83149 4.92485 4.94983 5.02983 5.08713 5.11200 5.12139 5.19025 5.22955 5.27662 5.34849 5.57388 5.77906 5.83042 6.03755 6.40265 6.51041 6.64276 6.86238 6.97259 7.16476 8.74751 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.031022 B = 0.002117 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.356438 B =13220.212776 C =13892.673026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.149 3.851 3 C -0.175 4.175 4 C -0.025 4.025 5 C -0.120 4.120 6 C -0.105 4.105 7 C -0.108 4.108 8 C 0.131 3.869 9 N -0.630 5.630 10 C 0.520 3.480 11 O -0.516 6.516 12 C 0.501 3.499 13 O -0.549 6.549 14 N -0.671 5.671 15 C 0.229 3.771 16 C -0.556 4.556 17 H 0.054 0.946 18 C 0.024 3.976 19 N -0.932 5.932 20 Si 0.944 3.056 21 H -0.262 1.262 22 H -0.276 1.276 23 H -0.250 1.250 24 C -0.105 4.105 25 C -0.089 4.089 26 C 0.106 3.894 27 N -0.512 5.512 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.172 0.828 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.166 0.834 36 H 0.434 0.566 37 H 0.414 0.586 38 H 0.032 0.968 39 H 0.030 0.970 40 H 0.273 0.727 41 H 0.137 0.863 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.617 19.741 -9.593 33.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.003 4.003 3 C -0.195 4.195 4 C -0.033 4.033 5 C -0.176 4.176 6 C -0.108 4.108 7 C -0.129 4.129 8 C 0.037 3.963 9 N -0.278 5.278 10 C 0.302 3.698 11 O -0.391 6.391 12 C 0.281 3.719 13 O -0.428 6.428 14 N -0.321 5.321 15 C 0.106 3.894 16 C -0.594 4.594 17 H 0.072 0.928 18 C -0.176 4.176 19 N -0.570 5.570 20 Si 0.766 3.234 21 H -0.187 1.187 22 H -0.201 1.201 23 H -0.174 1.174 24 C -0.126 4.126 25 C -0.109 4.109 26 C -0.015 4.015 27 N -0.223 5.223 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.189 0.811 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.183 0.817 36 H 0.275 0.725 37 H 0.250 0.750 38 H 0.050 0.950 39 H 0.048 0.952 40 H 0.083 0.917 41 H 0.154 0.846 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -25.740 18.747 -9.491 33.228 hybrid contribution 1.399 0.181 0.074 1.413 sum -24.341 18.928 -9.417 32.240 Atomic orbital electron populations 1.20880 0.86428 1.04568 1.04243 1.22136 0.98731 0.88133 0.91335 1.21955 0.94223 1.00065 1.03236 1.20536 0.94571 0.94929 0.93241 1.20989 1.00640 0.91791 1.04194 1.18644 0.93933 0.94259 1.03978 1.21183 0.93129 0.96838 1.01730 1.17790 0.81790 0.94534 1.02185 1.42966 1.05069 1.29987 1.49782 1.20158 0.88393 0.82340 0.78946 1.90766 1.67026 1.36132 1.45142 1.19991 0.88171 0.83088 0.80686 1.90716 1.67516 1.37344 1.47252 1.45968 1.09236 1.26168 1.50714 1.19392 0.76211 0.96761 0.97019 1.21258 0.93650 1.09620 1.34847 0.92831 1.25691 1.00486 0.96959 0.94493 1.69998 1.17406 1.29434 1.40146 0.85765 0.78317 0.79050 0.80230 1.18717 1.20079 1.17404 1.21050 0.93896 0.98552 0.99081 1.20735 0.93245 0.97150 0.99721 1.19064 0.89766 0.93355 0.99313 1.67871 1.08305 1.30440 1.15685 0.88987 0.91102 0.87890 0.81089 0.89184 0.90082 0.88527 0.81708 0.72546 0.74993 0.95045 0.95188 0.91748 0.84577 0.83969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 10.14 71.24 0.72 -0.28 16 2 C 0.15 2.55 6.78 42.93 0.29 2.84 16 3 C -0.18 -2.27 9.33 22.14 0.21 -2.06 16 4 C -0.02 -0.37 5.92 -19.62 -0.12 -0.48 16 5 C -0.12 -0.90 9.59 71.23 0.68 -0.22 16 6 C -0.11 -2.18 5.74 -21.28 -0.12 -2.30 16 7 C -0.11 -2.06 9.25 22.68 0.21 -1.85 16 8 C 0.13 3.09 6.28 38.23 0.24 3.33 16 9 N -0.63 -15.15 5.30 -304.87 -1.62 -16.77 16 10 C 0.52 16.05 7.72 87.24 0.67 16.72 16 11 O -0.52 -17.80 13.88 -3.33 -0.05 -17.85 16 12 C 0.50 18.08 7.89 87.24 0.69 18.77 16 13 O -0.55 -21.13 16.48 -3.28 -0.05 -21.18 16 14 N -0.67 -27.23 5.54 -468.26 -2.59 -29.82 16 15 C 0.23 10.72 4.50 85.63 0.38 11.10 16 16 C -0.56 -30.46 9.83 25.60 0.25 -30.21 16 17 H 0.05 3.17 7.84 -2.91 -0.02 3.15 16 18 C 0.02 1.35 5.47 84.66 0.46 1.81 16 19 N -0.93 -55.44 13.96 21.45 0.30 -55.14 16 20 Si 0.94 42.18 27.47 68.60 1.88 44.07 16 21 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 23 H -0.25 -10.69 6.54 99.48 0.65 -10.04 16 24 C -0.10 -2.73 8.59 22.16 0.19 -2.54 16 25 C -0.09 -2.25 9.96 22.31 0.22 -2.03 16 26 C 0.11 2.64 6.61 40.31 0.27 2.91 16 27 N -0.51 -12.27 10.23 -176.68 -1.81 -14.08 16 28 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 0.43 8.07 -2.39 -0.02 0.41 16 31 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 32 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.08 0.54 6.52 -2.38 -0.02 0.52 16 34 H 0.10 0.35 8.10 -2.39 -0.02 0.33 16 35 H 0.17 2.10 6.45 -2.91 -0.02 2.09 16 36 H 0.43 8.50 8.29 -92.71 -0.77 7.73 16 37 H 0.41 16.33 7.79 -92.70 -0.72 15.60 16 38 H 0.03 1.50 7.20 -2.39 -0.02 1.48 16 39 H 0.03 1.41 7.57 -2.38 -0.02 1.39 16 40 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 41 H 0.14 3.85 6.18 -2.91 -0.02 3.84 16 42 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -70.98 360.07 0.87 -70.11 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -0.45 Total: 25.16 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: 5.26 Total: 15.49 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -5.72 Total: -115.80 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -0.10 Total: -39.03 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.88 Total: 44.07 kcal Total: -70.98 0.87 -70.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890234410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.082 kcal (2) G-P(sol) polarization free energy of solvation -70.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds