Wall clock time and date at job start Tue Mar 31 2020 15:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38059 * 126.28972 * 2 1 4 4 C 1.47406 * 126.41472 * 359.97438 * 3 2 1 5 5 O 1.21606 * 120.00446 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99538 * 180.02562 * 4 3 2 7 7 C 1.39873 * 119.99701 * 185.41455 * 6 4 3 8 8 C 1.39049 * 120.08076 * 24.77605 * 7 6 4 9 9 C 1.38120 * 119.68256 * 179.97438 * 8 7 6 10 10 C 1.38016 * 120.42951 * 359.76945 * 9 8 7 11 11 C 1.39311 * 120.39075 * 0.10006 * 10 9 8 12 12 C 1.38332 * 120.08386 * 204.49160 * 7 6 4 13 13 C 1.51642 * 132.17111 * 1.61871 * 12 7 6 14 14 C 1.54709 * 101.97802 * 163.79312 * 13 12 7 15 15 O 1.36155 * 129.85556 * 180.62192 * 11 10 9 16 16 C 1.41291 * 107.16662 * 180.26171 * 3 2 1 17 17 N 1.30451 * 108.02539 * 359.55136 * 16 3 2 18 18 N 1.34263 * 126.29226 * 179.97438 * 2 1 3 19 19 C 1.46494 * 125.75533 * 0.02562 * 18 2 1 20 20 C 1.50703 * 109.47007 * 89.99842 * 19 18 2 21 21 H 1.07997 * 119.99980 * 359.97438 * 20 19 18 22 22 C 1.37882 * 120.00180 * 179.97438 * 20 19 18 23 23 N 1.31508 * 120.00138 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99656 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47316 * 89.99664 * 24 22 20 26 26 H 1.48498 * 109.47129 * 209.99553 * 24 22 20 27 27 H 1.48502 * 109.47180 * 329.99496 * 24 22 20 28 28 H 1.09000 * 109.46781 * 89.98142 * 1 2 3 29 29 H 1.09001 * 109.46997 * 209.97537 * 1 2 3 30 30 H 1.08998 * 109.47525 * 329.98020 * 1 2 3 31 31 H 0.97001 * 120.00535 * 5.69921 * 6 4 3 32 32 H 1.08002 * 120.16211 * 359.93372 * 8 7 6 33 33 H 1.07996 * 119.78662 * 179.79680 * 9 8 7 34 34 H 1.07998 * 119.80605 * 180.02562 * 10 9 8 35 35 H 1.08999 * 111.09925 * 45.53883 * 13 12 7 36 36 H 1.08995 * 110.76343 * 281.90109 * 13 12 7 37 37 H 1.09001 * 110.75308 * 266.70284 * 14 13 12 38 38 H 1.09006 * 110.91283 * 143.41488 * 14 13 12 39 39 H 1.08007 * 125.99073 * 179.70355 * 16 3 2 40 40 H 1.09004 * 109.47165 * 209.99557 * 19 18 2 41 41 H 1.08997 * 109.47552 * 329.99854 * 19 18 2 42 42 H 0.96998 * 120.00057 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3242 1.1128 0.0000 4 6 1.8860 2.5202 -0.0005 5 8 0.6997 2.7877 -0.0006 6 7 2.8001 3.5106 -0.0010 7 6 2.3883 4.8425 0.1128 8 6 1.1768 5.1476 0.7233 9 6 0.7784 6.4657 0.8317 10 6 1.5768 7.4797 0.3427 11 6 2.7939 7.1861 -0.2683 12 6 3.1880 5.8597 -0.3764 13 6 4.5204 5.8486 -1.1003 14 6 4.5777 7.2781 -1.6892 15 8 3.7268 8.0223 -0.8014 16 6 3.6591 0.6499 -0.0062 17 7 3.6342 -0.6543 0.0001 18 7 2.3018 -1.0822 0.0005 19 6 1.8503 -2.4758 0.0006 20 6 1.6959 -2.9539 -1.4202 21 1 1.9121 -2.2863 -2.2411 22 6 1.2787 -4.2437 -1.6722 23 7 1.1435 -4.6607 -2.9120 24 14 0.9040 -5.3982 -0.2523 25 1 -0.5272 -5.2730 0.1231 26 1 1.1874 -6.7967 -0.6634 27 1 1.7542 -5.0427 0.9123 28 1 -0.3633 0.0003 -1.0277 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3634 0.8898 0.5141 31 1 3.7433 3.3000 -0.0844 32 1 0.5500 4.3578 1.1102 33 1 -0.1637 6.7044 1.3025 34 1 1.2557 8.5069 0.4332 35 1 4.5302 5.1002 -1.8927 36 1 5.3391 5.6826 -0.4002 37 1 4.1825 7.2935 -2.7049 38 1 5.5955 7.6677 -1.6665 39 1 4.5451 1.2677 -0.0123 40 1 2.5848 -3.0957 0.5147 41 1 0.8915 -2.5471 0.5141 42 1 0.8496 -5.5680 -3.0893 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890338136.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:45 Heat of formation + Delta-G solvation = 37.174335 kcal Electronic energy + Delta-G solvation = -26691.930357 eV Core-core repulsion = 22832.167632 eV Total energy + Delta-G solvation = -3859.762725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.44694 -40.96066 -39.50327 -37.21510 -34.80400 -33.96254 -32.46833 -32.17276 -31.45674 -29.75584 -29.14300 -27.72109 -26.80550 -23.93539 -23.37663 -22.88199 -22.13488 -21.38990 -19.89457 -19.26105 -17.96261 -17.53214 -17.28417 -16.67226 -16.39477 -15.61791 -15.55094 -15.25858 -15.12792 -14.57994 -14.34351 -14.02091 -13.60524 -13.49396 -13.28926 -13.18032 -12.84448 -12.78914 -12.63114 -12.37723 -12.17857 -12.05995 -11.95548 -11.68313 -11.40315 -11.30225 -11.17331 -10.89492 -10.48020 -10.38784 -10.29398 -9.85772 -9.51252 -8.90328 -8.77512 -8.45037 -8.21338 -7.92637 -6.38225 -4.43598 1.10458 1.27811 2.00693 2.58666 2.86758 3.06012 3.07077 3.13684 3.15740 3.29963 3.51247 3.81768 4.10796 4.21429 4.35907 4.71295 4.75956 4.85916 4.92329 5.00578 5.06453 5.14079 5.22597 5.33165 5.42981 5.44572 5.51594 5.53898 5.62431 5.70681 5.94004 6.07976 6.12504 6.20889 6.29908 6.36793 6.39566 6.45914 6.49222 6.64552 6.87873 7.08205 7.11652 7.42013 7.45772 8.12286 8.14732 8.29083 8.64316 9.15243 10.73932 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.026187 B = 0.002511 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.963172 B =11149.150354 C =11665.002302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.175 3.825 3 C -0.334 4.334 4 C 0.605 3.395 5 O -0.529 6.529 6 N -0.672 5.672 7 C 0.216 3.784 8 C -0.160 4.160 9 C -0.065 4.065 10 C -0.164 4.164 11 C 0.124 3.876 12 C -0.219 4.219 13 C -0.106 4.106 14 C 0.054 3.946 15 O -0.306 6.306 16 C 0.063 3.937 17 N -0.289 5.289 18 N -0.311 5.311 19 C 0.224 3.776 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.082 3.918 23 N -0.882 5.882 24 Si 0.872 3.128 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.263 1.263 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.409 0.591 32 H 0.154 0.846 33 H 0.133 0.867 34 H 0.125 0.875 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.178 0.822 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.901 20.836 6.937 22.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.038 3.962 3 C -0.349 4.349 4 C 0.398 3.602 5 O -0.407 6.407 6 N -0.314 5.314 7 C 0.120 3.880 8 C -0.181 4.181 9 C -0.083 4.083 10 C -0.184 4.184 11 C 0.078 3.922 12 C -0.222 4.222 13 C -0.143 4.143 14 C -0.021 4.021 15 O -0.220 6.220 16 C -0.125 4.125 17 N -0.108 5.108 18 N -0.087 5.087 19 C 0.105 3.895 20 C -0.585 4.585 21 H 0.100 0.900 22 C -0.123 4.123 23 N -0.518 5.518 24 Si 0.698 3.302 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.188 1.188 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.245 0.755 32 H 0.171 0.829 33 H 0.151 0.849 34 H 0.143 0.857 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.124 0.876 39 H 0.195 0.805 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.748 19.709 6.852 21.200 hybrid contribution 0.115 -0.322 0.258 0.429 sum 3.863 19.386 7.110 21.007 Atomic orbital electron populations 1.20633 0.86500 1.03849 1.04428 1.21488 0.95034 0.86302 0.93349 1.19518 0.93313 0.91957 1.30124 1.17384 0.84867 0.83838 0.74121 1.90674 1.16514 1.83872 1.49638 1.43370 1.11006 1.03880 1.73143 1.16979 0.93921 0.82222 0.94883 1.21426 0.96989 0.97652 1.02009 1.20780 0.98764 0.91543 0.97238 1.20189 0.92224 1.00349 1.05618 1.19234 0.89928 0.87779 0.95211 1.20319 0.99206 0.93410 1.09312 1.21700 0.94694 0.98077 0.99849 1.23785 0.95075 0.89881 0.93355 1.86816 1.41673 1.35018 1.58534 1.23760 0.96302 0.92628 0.99815 1.77177 0.98077 1.12262 1.23273 1.48950 1.02736 1.07631 1.49428 1.20191 0.95809 0.73129 1.00330 1.21071 1.48318 0.99236 0.89911 0.90016 1.24788 0.94230 0.97398 0.95892 1.69855 1.44947 1.18289 1.18696 0.86906 0.79553 0.81087 0.82652 1.19452 1.20305 1.18770 0.89254 0.90905 0.88575 0.75543 0.82869 0.84883 0.85677 0.89142 0.89358 0.90536 0.87642 0.80487 0.92611 0.93304 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.59 9.57 36.01 0.34 -1.25 16 2 C 0.18 3.32 7.01 -81.59 -0.57 2.75 16 3 C -0.33 -5.64 6.13 -105.07 -0.64 -6.28 16 4 C 0.61 9.37 7.62 -12.53 -0.10 9.27 16 5 O -0.53 -9.16 11.99 5.27 0.06 -9.10 16 6 N -0.67 -8.29 5.34 -10.93 -0.06 -8.34 16 7 C 0.22 2.74 6.42 -83.85 -0.54 2.20 16 8 C -0.16 -2.07 8.73 -39.32 -0.34 -2.42 16 9 C -0.06 -0.70 10.01 -39.71 -0.40 -1.10 16 10 C -0.16 -1.78 10.06 -39.26 -0.39 -2.18 16 11 C 0.12 1.45 7.03 -38.98 -0.27 1.18 16 12 C -0.22 -2.48 6.19 -103.92 -0.64 -3.12 16 13 C -0.11 -0.86 6.96 -26.52 -0.18 -1.04 16 14 C 0.05 0.41 8.01 38.06 0.30 0.71 16 15 O -0.31 -3.37 11.10 -20.23 -0.22 -3.59 16 16 C 0.06 1.00 11.51 -16.98 -0.20 0.81 16 17 N -0.29 -5.81 12.50 30.86 0.39 -5.43 16 18 N -0.31 -6.58 3.56 -57.77 -0.21 -6.79 16 19 C 0.22 5.04 5.04 -5.20 -0.03 5.02 16 20 C -0.55 -14.64 9.94 -34.44 -0.34 -14.98 16 21 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 22 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 23 N -0.88 -25.41 13.96 55.43 0.77 -24.64 16 24 Si 0.87 19.33 27.47 -169.99 -4.67 14.66 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.26 -5.54 6.54 56.52 0.37 -5.17 16 28 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.07 1.13 7.05 -51.93 -0.37 0.76 16 30 H 0.10 1.48 6.50 -51.93 -0.34 1.14 16 31 H 0.41 3.92 7.62 -40.82 -0.31 3.61 16 32 H 0.15 2.16 5.79 -52.49 -0.30 1.86 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.18 1.95 7.51 -52.48 -0.39 1.55 16 40 H 0.06 1.26 7.20 -51.93 -0.37 0.89 16 41 H 0.05 1.01 6.44 -51.93 -0.33 0.67 16 42 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 353.66 15.07 5.33 5.33 Total: -1.00 -32.35 353.66 -7.67 -40.03 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.97 Total: 6.19 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -4.10 Total: -8.31 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.90 Total: -45.20 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.16 Total: -12.69 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.67 Total: 14.66 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.35 -7.67 -40.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890338136.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.199 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds