Wall clock time and date at job start Tue Mar 31 2020 15:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38059 * 126.28972 * 2 1 4 4 C 1.47406 * 126.41472 * 359.97438 * 3 2 1 5 5 O 1.21606 * 120.00446 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99538 * 180.02562 * 4 3 2 7 7 C 1.39873 * 119.99701 * 185.41455 * 6 4 3 8 8 C 1.39049 * 120.08076 * 24.77605 * 7 6 4 9 9 C 1.38120 * 119.68256 * 179.97438 * 8 7 6 10 10 C 1.38016 * 120.42951 * 359.76945 * 9 8 7 11 11 C 1.39311 * 120.39075 * 0.10006 * 10 9 8 12 12 C 1.38332 * 120.08386 * 204.49160 * 7 6 4 13 13 C 1.51642 * 132.17111 * 1.61871 * 12 7 6 14 14 C 1.54709 * 101.97802 * 163.79312 * 13 12 7 15 15 O 1.36155 * 129.85556 * 180.62192 * 11 10 9 16 16 C 1.41291 * 107.16662 * 180.26171 * 3 2 1 17 17 N 1.30451 * 108.02539 * 359.55136 * 16 3 2 18 18 N 1.34263 * 126.29226 * 179.97438 * 2 1 3 19 19 C 1.46494 * 125.75533 * 0.02562 * 18 2 1 20 20 C 1.50703 * 109.47007 * 89.99842 * 19 18 2 21 21 H 1.07997 * 119.99980 * 359.97438 * 20 19 18 22 22 C 1.37882 * 120.00180 * 179.97438 * 20 19 18 23 23 N 1.31508 * 120.00138 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99656 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47316 * 89.99664 * 24 22 20 26 26 H 1.48498 * 109.47129 * 209.99553 * 24 22 20 27 27 H 1.48502 * 109.47180 * 329.99496 * 24 22 20 28 28 H 1.09000 * 109.46781 * 89.98142 * 1 2 3 29 29 H 1.09001 * 109.46997 * 209.97537 * 1 2 3 30 30 H 1.08998 * 109.47525 * 329.98020 * 1 2 3 31 31 H 0.97001 * 120.00535 * 5.69921 * 6 4 3 32 32 H 1.08002 * 120.16211 * 359.93372 * 8 7 6 33 33 H 1.07996 * 119.78662 * 179.79680 * 9 8 7 34 34 H 1.07998 * 119.80605 * 180.02562 * 10 9 8 35 35 H 1.08999 * 111.09925 * 45.53883 * 13 12 7 36 36 H 1.08995 * 110.76343 * 281.90109 * 13 12 7 37 37 H 1.09001 * 110.75308 * 266.70284 * 14 13 12 38 38 H 1.09006 * 110.91283 * 143.41488 * 14 13 12 39 39 H 1.08007 * 125.99073 * 179.70355 * 16 3 2 40 40 H 1.09004 * 109.47165 * 209.99557 * 19 18 2 41 41 H 1.08997 * 109.47552 * 329.99854 * 19 18 2 42 42 H 0.96998 * 120.00057 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3242 1.1128 0.0000 4 6 1.8860 2.5202 -0.0005 5 8 0.6997 2.7877 -0.0006 6 7 2.8001 3.5106 -0.0010 7 6 2.3883 4.8425 0.1128 8 6 1.1768 5.1476 0.7233 9 6 0.7784 6.4657 0.8317 10 6 1.5768 7.4797 0.3427 11 6 2.7939 7.1861 -0.2683 12 6 3.1880 5.8597 -0.3764 13 6 4.5204 5.8486 -1.1003 14 6 4.5777 7.2781 -1.6892 15 8 3.7268 8.0223 -0.8014 16 6 3.6591 0.6499 -0.0062 17 7 3.6342 -0.6543 0.0001 18 7 2.3018 -1.0822 0.0005 19 6 1.8503 -2.4758 0.0006 20 6 1.6959 -2.9539 -1.4202 21 1 1.9121 -2.2863 -2.2411 22 6 1.2787 -4.2437 -1.6722 23 7 1.1435 -4.6607 -2.9120 24 14 0.9040 -5.3982 -0.2523 25 1 -0.5272 -5.2730 0.1231 26 1 1.1874 -6.7967 -0.6634 27 1 1.7542 -5.0427 0.9123 28 1 -0.3633 0.0003 -1.0277 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3634 0.8898 0.5141 31 1 3.7433 3.3000 -0.0844 32 1 0.5500 4.3578 1.1102 33 1 -0.1637 6.7044 1.3025 34 1 1.2557 8.5069 0.4332 35 1 4.5302 5.1002 -1.8927 36 1 5.3391 5.6826 -0.4002 37 1 4.1825 7.2935 -2.7049 38 1 5.5955 7.6677 -1.6665 39 1 4.5451 1.2677 -0.0123 40 1 2.5848 -3.0957 0.5147 41 1 0.8915 -2.5471 0.5141 42 1 0.8496 -5.5680 -3.0893 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890338136.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:45 Heat of formation + Delta-G solvation = 15.873996 kcal Electronic energy + Delta-G solvation = -26692.854009 eV Core-core repulsion = 22832.167632 eV Total energy + Delta-G solvation = -3860.686377 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.53995 -42.07454 -40.61295 -38.16382 -35.94040 -35.65496 -34.02846 -33.13905 -32.90658 -30.71740 -30.15724 -29.22412 -28.13358 -25.24273 -24.47333 -24.05967 -23.17727 -22.36337 -21.13421 -20.63558 -19.29992 -18.99969 -18.58852 -17.61803 -17.20994 -16.72502 -16.61834 -16.53613 -16.36554 -16.05025 -15.65395 -15.36776 -14.99539 -14.49716 -14.30756 -14.20092 -14.12589 -13.99141 -13.82984 -13.72116 -13.57639 -13.16469 -13.09738 -12.85485 -12.60882 -12.57223 -12.17712 -12.16749 -11.96212 -11.86200 -11.76273 -11.29945 -10.92740 -10.73703 -10.31679 -9.64190 -9.23957 -8.91367 -8.44090 -6.56394 0.15631 0.37877 0.69428 1.25897 1.33712 1.34509 1.44403 1.55674 2.10213 2.23914 2.31080 2.40421 2.83996 2.88468 3.52231 3.59750 3.66159 3.70041 3.95408 4.08320 4.12581 4.17994 4.27943 4.37039 4.40493 4.50061 4.56243 4.58428 4.67867 4.69751 4.79072 4.88322 4.92338 5.04704 5.08102 5.16254 5.25362 5.26152 5.45038 5.54876 5.56878 5.74559 5.79617 6.17368 6.24110 6.43153 6.46780 6.73137 7.07639 7.13309 8.72348 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.026187 B = 0.002511 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.963172 B =11149.150354 C =11665.002302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.156 3.844 3 C -0.332 4.332 4 C 0.608 3.392 5 O -0.551 6.551 6 N -0.655 5.655 7 C 0.195 3.805 8 C -0.180 4.180 9 C -0.064 4.064 10 C -0.166 4.166 11 C 0.110 3.890 12 C -0.220 4.220 13 C -0.105 4.105 14 C 0.049 3.951 15 O -0.320 6.320 16 C 0.083 3.917 17 N -0.330 5.330 18 N -0.337 5.337 19 C 0.233 3.767 20 C -0.554 4.554 21 H 0.027 0.973 22 C 0.024 3.976 23 N -0.935 5.935 24 Si 0.948 3.052 25 H -0.252 1.252 26 H -0.278 1.278 27 H -0.241 1.241 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.423 0.577 32 H 0.137 0.863 33 H 0.156 0.844 34 H 0.144 0.856 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.134 0.866 39 H 0.228 0.772 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.777 22.270 8.607 24.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.020 3.980 3 C -0.347 4.347 4 C 0.399 3.601 5 O -0.430 6.430 6 N -0.298 5.298 7 C 0.100 3.900 8 C -0.200 4.200 9 C -0.082 4.082 10 C -0.186 4.186 11 C 0.064 3.936 12 C -0.224 4.224 13 C -0.142 4.142 14 C -0.025 4.025 15 O -0.234 6.234 16 C -0.105 4.105 17 N -0.149 5.149 18 N -0.113 5.113 19 C 0.113 3.887 20 C -0.592 4.592 21 H 0.045 0.955 22 C -0.177 4.177 23 N -0.573 5.573 24 Si 0.769 3.231 25 H -0.176 1.176 26 H -0.204 1.204 27 H -0.165 1.165 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.125 0.875 31 H 0.261 0.739 32 H 0.155 0.845 33 H 0.174 0.826 34 H 0.162 0.838 35 H 0.118 0.882 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.152 0.848 39 H 0.244 0.756 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.656 21.196 8.526 23.317 hybrid contribution -0.093 -0.514 -0.361 0.635 sum 4.564 20.682 8.165 22.699 Atomic orbital electron populations 1.20645 0.85481 1.04838 1.03998 1.21986 0.96053 0.86544 0.93418 1.19760 0.93560 0.92355 1.29053 1.17198 0.84934 0.83760 0.74191 1.90669 1.17558 1.84092 1.50729 1.43094 1.11201 1.03362 1.72176 1.17093 0.94493 0.82299 0.96145 1.21446 0.97345 0.98215 1.03005 1.21021 0.99631 0.90719 0.96873 1.20493 0.92028 1.01289 1.04771 1.19516 0.90426 0.88188 0.95490 1.20593 1.00285 0.92869 1.08608 1.21830 0.93450 0.98706 1.00213 1.24079 0.96040 0.89397 0.93017 1.86803 1.41851 1.35711 1.59055 1.24543 0.97601 0.91686 0.96650 1.77121 0.97983 1.14340 1.25469 1.48793 1.03512 1.07371 1.51627 1.19922 0.96923 0.74416 0.97429 1.21181 1.48224 0.98839 0.90940 0.95498 1.25811 0.93621 0.99235 0.99001 1.70018 1.46574 1.19101 1.21611 0.85715 0.80485 0.77823 0.79078 1.17616 1.20352 1.16473 0.90296 0.89938 0.87515 0.73929 0.84489 0.82617 0.83845 0.88203 0.87532 0.89959 0.84829 0.75558 0.92445 0.90983 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.06 9.57 71.24 0.68 -2.38 16 2 C 0.16 5.91 7.01 42.15 0.30 6.20 16 3 C -0.33 -10.96 6.13 -20.16 -0.12 -11.08 16 4 C 0.61 18.30 7.62 86.66 0.66 18.96 16 5 O -0.55 -19.04 11.99 -4.05 -0.05 -19.09 16 6 N -0.66 -15.11 5.34 -306.75 -1.64 -16.75 16 7 C 0.20 4.71 6.42 38.07 0.24 4.95 16 8 C -0.18 -4.54 8.73 22.44 0.20 -4.35 16 9 C -0.06 -1.31 10.01 22.19 0.22 -1.09 16 10 C -0.17 -3.34 10.06 22.48 0.23 -3.11 16 11 C 0.11 2.37 7.03 22.66 0.16 2.53 16 12 C -0.22 -4.56 6.19 -19.41 -0.12 -4.68 16 13 C -0.11 -1.40 6.96 30.73 0.21 -1.18 16 14 C 0.05 0.60 8.01 72.56 0.58 1.18 16 15 O -0.32 -6.33 11.10 -95.31 -1.06 -7.39 16 16 C 0.08 2.51 11.51 85.65 0.99 3.50 16 17 N -0.33 -13.17 12.50 -56.27 -0.70 -13.87 16 18 N -0.34 -14.30 3.56 -336.68 -1.20 -15.50 16 19 C 0.23 10.47 5.04 85.64 0.43 10.90 16 20 C -0.55 -30.63 9.94 25.60 0.25 -30.37 16 21 H 0.03 1.73 8.06 -2.91 -0.02 1.70 16 22 C 0.02 1.29 5.47 84.66 0.46 1.75 16 23 N -0.94 -55.75 13.96 21.45 0.30 -55.46 16 24 Si 0.95 39.51 27.47 68.60 1.88 41.39 16 25 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 26 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 27 H -0.24 -9.16 6.54 99.48 0.65 -8.51 16 28 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.08 2.53 7.05 -2.39 -0.02 2.51 16 30 H 0.11 3.29 6.50 -2.39 -0.02 3.27 16 31 H 0.42 6.99 7.62 -92.71 -0.71 6.28 16 32 H 0.14 3.90 5.79 -2.91 -0.02 3.88 16 33 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 34 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.13 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.23 4.18 7.51 -2.91 -0.02 4.16 16 40 H 0.06 2.55 7.20 -2.38 -0.02 2.53 16 41 H 0.07 2.88 6.44 -2.39 -0.02 2.86 16 42 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -73.87 353.66 3.22 -70.65 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.32 Total: 24.28 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 5.37 Total: -8.26 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -3.24 Total: -101.57 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -1.11 Total: -26.49 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 1.88 Total: 41.39 kcal Total: -73.87 3.22 -70.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890338136.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.519 kcal (2) G-P(sol) polarization free energy of solvation -73.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds