Wall clock time and date at job start Tue Mar 31 2020 15:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32431 * 118.53898 * 2 1 4 4 C 1.32318 * 121.53947 * 179.97438 * 3 2 1 5 5 O 1.35282 * 120.87428 * 179.97438 * 4 3 2 6 6 C 1.41579 * 118.25284 * 0.02562 * 4 3 2 7 7 C 1.40089 * 121.89981 * 180.02562 * 6 4 3 8 8 C 1.36072 * 119.85890 * 179.69764 * 7 6 4 9 9 C 1.40420 * 120.78509 * 0.56332 * 8 7 6 10 10 C 1.47991 * 119.71951 * 179.71071 * 9 8 7 11 11 O 1.21537 * 120.00158 * 185.13371 * 10 9 8 12 12 N 1.34784 * 120.00040 * 5.13103 * 10 9 8 13 13 C 1.46498 * 119.99832 * 184.88039 * 12 10 9 14 14 C 1.53003 * 109.46591 * 184.74283 * 13 12 10 15 15 C 1.50697 * 115.55240 * 294.74480 * 14 13 12 16 16 H 1.07997 * 120.00148 * 122.50486 * 15 14 13 17 17 C 1.37883 * 119.99854 * 302.22977 * 15 14 13 18 18 N 1.31517 * 119.99881 * 173.42716 * 17 15 14 19 19 Si 1.86799 * 120.00242 * 353.43232 * 17 15 14 20 20 H 1.48500 * 109.47232 * 94.24430 * 19 17 15 21 21 H 1.48497 * 109.47245 * 214.24548 * 19 17 15 22 22 H 1.48502 * 109.46839 * 334.24322 * 19 17 15 23 23 C 1.52996 * 117.49657 * 80.41747 * 14 13 12 24 24 C 1.53000 * 117.49436 * 149.07524 * 14 13 12 25 25 C 1.38549 * 120.56483 * 359.43224 * 9 8 7 26 26 C 1.40119 * 119.36512 * 0.27643 * 25 9 8 27 27 N 1.31118 * 118.53860 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47319 * 270.01991 * 1 2 3 29 29 H 1.08996 * 109.47638 * 30.02617 * 1 2 3 30 30 H 1.09007 * 109.47331 * 150.02227 * 1 2 3 31 31 H 0.96695 * 114.00496 * 90.00298 * 5 4 3 32 32 H 1.07995 * 120.06789 * 359.97438 * 7 6 4 33 33 H 1.08006 * 119.60635 * 180.27391 * 8 7 6 34 34 H 0.96998 * 119.99576 * 4.87937 * 12 10 9 35 35 H 1.09003 * 109.47150 * 64.74312 * 13 12 10 36 36 H 1.08997 * 109.47123 * 304.74616 * 13 12 10 37 37 H 0.96992 * 119.99803 * 179.97438 * 18 17 15 38 38 H 1.09002 * 117.49791 * 214.99226 * 23 14 13 39 39 H 1.08998 * 117.49935 * 0.02562 * 23 14 13 40 40 H 1.09000 * 117.50226 * 359.97438 * 24 14 13 41 41 H 1.09002 * 117.49855 * 144.97167 * 24 14 13 42 42 H 1.08002 * 120.31876 * 180.25145 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1397 1.1634 0.0000 4 6 3.4610 1.2327 0.0005 5 8 4.0935 2.4285 0.0000 6 6 4.1956 0.0223 0.0005 7 6 5.5964 0.0065 0.0015 8 6 6.2605 -1.1811 0.0077 9 6 5.5584 -2.3972 0.0012 10 6 6.3046 -3.6752 0.0017 11 8 5.7062 -4.7283 -0.0981 12 7 7.6478 -3.6712 0.1127 13 6 8.3953 -4.9267 0.0059 14 6 9.8766 -4.6633 0.2837 15 6 10.5801 -3.7858 -0.7193 16 1 11.0668 -2.8779 -0.3950 17 6 10.6073 -4.1449 -2.0502 18 7 11.1066 -3.3194 -2.9440 19 14 9.9349 -5.8040 -2.5839 20 1 8.5184 -5.6524 -3.0032 21 1 10.7359 -6.3195 -3.7232 22 1 10.0160 -6.7590 -1.4496 23 6 10.3125 -4.5543 1.7462 24 6 10.6863 -5.7915 0.9260 25 6 4.1729 -2.4108 0.0002 26 6 3.4738 -1.1965 -0.0002 27 7 2.1334 -1.1519 0.0005 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 4.2771 2.7768 0.8831 32 1 6.1480 0.9350 0.0020 33 1 7.3405 -1.1885 0.0130 34 1 8.1195 -2.8372 0.2632 35 1 8.2807 -5.3334 -0.9989 36 1 8.0106 -5.6415 0.7332 37 1 11.1261 -3.5722 -3.8802 38 1 11.1083 -3.8480 1.9829 39 1 9.5441 -4.6707 2.5104 40 1 10.1636 -6.7212 1.1510 41 1 11.7277 -5.8993 0.6227 42 1 3.6369 -3.3485 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890357606.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:13 Heat of formation + Delta-G solvation = 20.388136 kcal Electronic energy + Delta-G solvation = -26758.629169 eV Core-core repulsion = 22898.138539 eV Total energy + Delta-G solvation = -3860.490630 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.76166 -39.72712 -38.20124 -37.69361 -36.95903 -33.86172 -33.38859 -32.29118 -32.25442 -31.15437 -28.60288 -27.23053 -25.71852 -24.59542 -23.46618 -22.48919 -21.70789 -20.80475 -19.53964 -19.22481 -18.66200 -17.97011 -17.03007 -16.69669 -16.17379 -15.72029 -15.38321 -15.17501 -14.77796 -14.50755 -14.28159 -14.10560 -13.78038 -13.37318 -13.28551 -13.16702 -12.99907 -12.87760 -12.56942 -12.44943 -12.25127 -11.92467 -11.84230 -11.13777 -11.08855 -10.87317 -10.75742 -10.64478 -10.35075 -9.91075 -9.62996 -9.53254 -9.45543 -9.29423 -8.95527 -8.58098 -8.56615 -8.42332 -6.27103 -4.29286 -0.20727 0.24501 1.45257 2.31562 2.86671 3.20432 3.27220 3.32502 3.34844 3.37604 3.73629 3.80224 3.99173 4.29229 4.30152 4.51018 4.63531 4.81869 4.83799 5.00982 5.06248 5.13450 5.25254 5.29659 5.39779 5.57413 5.61604 5.68622 5.85348 5.89881 5.97576 6.04837 6.06864 6.10986 6.27984 6.35703 6.40172 6.61647 6.69255 6.79867 6.91164 6.93980 7.04097 7.57453 7.79383 7.93083 8.31694 8.49185 8.74497 9.36449 10.83633 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018298 B = 0.002974 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.866343 B = 9412.907980 C = 9747.711262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.338 3.662 3 N -0.544 5.544 4 C 0.409 3.591 5 O -0.468 6.468 6 C -0.168 4.168 7 C -0.072 4.072 8 C -0.092 4.092 9 C -0.077 4.077 10 C 0.545 3.455 11 O -0.544 6.544 12 N -0.690 5.690 13 C 0.151 3.849 14 C -0.017 4.017 15 C -0.493 4.493 16 H 0.079 0.921 17 C 0.085 3.915 18 N -0.888 5.888 19 Si 0.867 3.133 20 H -0.277 1.277 21 H -0.291 1.291 22 H -0.252 1.252 23 C -0.181 4.181 24 C -0.188 4.188 25 C -0.044 4.044 26 C 0.167 3.833 27 N -0.503 5.503 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.412 0.588 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.408 0.592 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.267 0.733 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.724 8.971 8.854 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.070 3.930 3 N -0.269 5.269 4 C 0.208 3.792 5 O -0.276 6.276 6 C -0.174 4.174 7 C -0.092 4.092 8 C -0.111 4.111 9 C -0.084 4.084 10 C 0.330 3.670 11 O -0.423 6.423 12 N -0.339 5.339 13 C 0.028 3.972 14 C -0.018 4.018 15 C -0.530 4.530 16 H 0.097 0.903 17 C -0.120 4.120 18 N -0.524 5.524 19 Si 0.695 3.305 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.176 1.176 23 C -0.218 4.218 24 C -0.226 4.226 25 C -0.064 4.064 26 C 0.040 3.960 27 N -0.219 5.219 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.273 0.727 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.245 0.755 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -16.044 8.076 7.969 19.651 hybrid contribution 1.064 -0.239 -0.047 1.091 sum -14.981 7.837 7.923 18.671 Atomic orbital electron populations 1.20612 0.85259 1.04394 1.04038 1.22961 0.97945 0.81899 0.90205 1.67683 1.10095 1.31457 1.17699 1.19606 0.86720 0.84824 0.88052 1.84637 1.75955 1.32569 1.34400 1.19704 0.96481 0.94122 1.07053 1.20781 0.91561 0.99285 0.97619 1.21262 1.01414 0.91053 0.97355 1.20254 0.93753 0.94162 1.00196 1.18164 0.82746 0.88145 0.77905 1.90755 1.68760 1.32196 1.50586 1.45803 1.05267 1.12480 1.70390 1.21204 0.91330 0.84284 1.00423 1.19585 0.90203 0.99068 0.92988 1.20250 1.34752 1.07872 0.90130 0.90252 1.24915 0.94109 0.96524 0.96411 1.69879 1.44982 1.35507 1.02061 0.87051 0.78755 0.85655 0.79011 1.20360 1.21808 1.17563 1.22793 1.03035 1.01526 0.94424 1.23072 1.01362 0.91997 1.06185 1.21125 0.92404 0.97224 0.95668 1.18727 0.89117 0.92357 0.95768 1.68605 1.08200 1.29234 1.15902 0.89427 0.89499 0.89278 0.72702 0.83624 0.83620 0.75501 0.92291 0.92599 0.92322 0.89563 0.90821 0.91079 0.89185 0.82572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.28 36.00 0.37 -0.29 16 2 C 0.34 4.04 7.62 -157.22 -1.20 2.84 16 3 N -0.54 -6.60 10.30 -10.38 -0.11 -6.71 16 4 C 0.41 4.64 7.89 -16.07 -0.13 4.51 16 5 O -0.47 -3.95 12.91 -17.54 -0.23 -4.18 16 6 C -0.17 -2.06 5.76 -106.63 -0.61 -2.68 16 7 C -0.07 -0.79 9.58 -39.67 -0.38 -1.17 16 8 C -0.09 -1.15 9.42 -39.54 -0.37 -1.52 16 9 C -0.08 -1.15 5.87 -104.96 -0.62 -1.77 16 10 C 0.55 9.88 7.76 -12.26 -0.10 9.78 16 11 O -0.54 -11.48 16.30 5.33 0.09 -11.39 16 12 N -0.69 -12.61 5.41 -61.20 -0.33 -12.95 16 13 C 0.15 3.10 5.06 -4.04 -0.02 3.08 16 14 C -0.02 -0.36 0.85 -155.66 -0.13 -0.49 16 15 C -0.49 -12.35 9.20 -34.44 -0.32 -12.66 16 16 H 0.08 2.14 8.06 -52.49 -0.42 1.72 16 17 C 0.08 2.26 5.46 -17.82 -0.10 2.16 16 18 N -0.89 -25.29 13.96 55.43 0.77 -24.52 16 19 Si 0.87 20.85 24.64 -169.99 -4.19 16.66 16 20 H -0.28 -6.82 6.96 56.52 0.39 -6.43 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.25 -5.72 6.18 56.52 0.35 -5.37 16 23 C -0.18 -3.27 9.96 -26.70 -0.27 -3.54 16 24 C -0.19 -3.66 8.81 -26.69 -0.24 -3.90 16 25 C -0.04 -0.65 9.58 -38.76 -0.37 -1.02 16 26 C 0.17 2.33 6.61 -84.86 -0.56 1.77 16 27 N -0.50 -6.89 10.32 -8.81 -0.09 -6.98 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.41 1.20 9.06 45.56 0.41 1.62 16 32 H 0.15 1.19 7.70 -52.49 -0.40 0.78 16 33 H 0.15 1.66 6.42 -52.48 -0.34 1.32 16 34 H 0.41 6.76 6.39 -40.82 -0.26 6.50 16 35 H 0.06 1.35 4.12 -51.93 -0.21 1.14 16 36 H 0.06 1.10 8.06 -51.93 -0.42 0.68 16 37 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 42 H 0.16 2.33 7.63 -52.49 -0.40 1.93 16 LS Contribution 356.52 15.07 5.37 5.37 Total: -1.00 -32.87 356.52 -7.94 -40.81 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -4.20 Total: 8.77 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -5.03 Total: -4.89 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 0.24 Total: -51.15 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.14 Total: -15.57 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.19 Total: 16.66 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.87 -7.94 -40.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890357606.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.196 kcal (2) G-P(sol) polarization free energy of solvation -32.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds