Wall clock time and date at job start Tue Mar 31 2020 15:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32431 * 118.53898 * 2 1 4 4 C 1.32318 * 121.53947 * 179.97438 * 3 2 1 5 5 O 1.35282 * 120.87428 * 179.97438 * 4 3 2 6 6 C 1.41579 * 118.25284 * 0.02562 * 4 3 2 7 7 C 1.40089 * 121.89981 * 180.02562 * 6 4 3 8 8 C 1.36072 * 119.85890 * 179.69764 * 7 6 4 9 9 C 1.40420 * 120.78509 * 0.56332 * 8 7 6 10 10 C 1.47991 * 119.71951 * 179.71071 * 9 8 7 11 11 O 1.21537 * 120.00158 * 185.13371 * 10 9 8 12 12 N 1.34784 * 120.00040 * 5.13103 * 10 9 8 13 13 C 1.46498 * 119.99832 * 184.88039 * 12 10 9 14 14 C 1.53003 * 109.46591 * 184.74283 * 13 12 10 15 15 C 1.50697 * 115.55240 * 294.74480 * 14 13 12 16 16 H 1.07997 * 120.00148 * 122.50486 * 15 14 13 17 17 C 1.37883 * 119.99854 * 302.22977 * 15 14 13 18 18 N 1.31517 * 119.99881 * 173.42716 * 17 15 14 19 19 Si 1.86799 * 120.00242 * 353.43232 * 17 15 14 20 20 H 1.48500 * 109.47232 * 94.24430 * 19 17 15 21 21 H 1.48497 * 109.47245 * 214.24548 * 19 17 15 22 22 H 1.48502 * 109.46839 * 334.24322 * 19 17 15 23 23 C 1.52996 * 117.49657 * 80.41747 * 14 13 12 24 24 C 1.53000 * 117.49436 * 149.07524 * 14 13 12 25 25 C 1.38549 * 120.56483 * 359.43224 * 9 8 7 26 26 C 1.40119 * 119.36512 * 0.27643 * 25 9 8 27 27 N 1.31118 * 118.53860 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47319 * 270.01991 * 1 2 3 29 29 H 1.08996 * 109.47638 * 30.02617 * 1 2 3 30 30 H 1.09007 * 109.47331 * 150.02227 * 1 2 3 31 31 H 0.96695 * 114.00496 * 90.00298 * 5 4 3 32 32 H 1.07995 * 120.06789 * 359.97438 * 7 6 4 33 33 H 1.08006 * 119.60635 * 180.27391 * 8 7 6 34 34 H 0.96998 * 119.99576 * 4.87937 * 12 10 9 35 35 H 1.09003 * 109.47150 * 64.74312 * 13 12 10 36 36 H 1.08997 * 109.47123 * 304.74616 * 13 12 10 37 37 H 0.96992 * 119.99803 * 179.97438 * 18 17 15 38 38 H 1.09002 * 117.49791 * 214.99226 * 23 14 13 39 39 H 1.08998 * 117.49935 * 0.02562 * 23 14 13 40 40 H 1.09000 * 117.50226 * 359.97438 * 24 14 13 41 41 H 1.09002 * 117.49855 * 144.97167 * 24 14 13 42 42 H 1.08002 * 120.31876 * 180.25145 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1397 1.1634 0.0000 4 6 3.4610 1.2327 0.0005 5 8 4.0935 2.4285 0.0000 6 6 4.1956 0.0223 0.0005 7 6 5.5964 0.0065 0.0015 8 6 6.2605 -1.1811 0.0077 9 6 5.5584 -2.3972 0.0012 10 6 6.3046 -3.6752 0.0017 11 8 5.7062 -4.7283 -0.0981 12 7 7.6478 -3.6712 0.1127 13 6 8.3953 -4.9267 0.0059 14 6 9.8766 -4.6633 0.2837 15 6 10.5801 -3.7858 -0.7193 16 1 11.0668 -2.8779 -0.3950 17 6 10.6073 -4.1449 -2.0502 18 7 11.1066 -3.3194 -2.9440 19 14 9.9349 -5.8040 -2.5839 20 1 8.5184 -5.6524 -3.0032 21 1 10.7359 -6.3195 -3.7232 22 1 10.0160 -6.7590 -1.4496 23 6 10.3125 -4.5543 1.7462 24 6 10.6863 -5.7915 0.9260 25 6 4.1729 -2.4108 0.0002 26 6 3.4738 -1.1965 -0.0002 27 7 2.1334 -1.1519 0.0005 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 4.2771 2.7768 0.8831 32 1 6.1480 0.9350 0.0020 33 1 7.3405 -1.1885 0.0130 34 1 8.1195 -2.8372 0.2632 35 1 8.2807 -5.3334 -0.9989 36 1 8.0106 -5.6415 0.7332 37 1 11.1261 -3.5722 -3.8802 38 1 11.1083 -3.8480 1.9829 39 1 9.5441 -4.6707 2.5104 40 1 10.1636 -6.7212 1.1510 41 1 11.7277 -5.8993 0.6227 42 1 3.6369 -3.3485 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890357606.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:13 Heat of formation + Delta-G solvation = -5.302525 kcal Electronic energy + Delta-G solvation = -26759.743200 eV Core-core repulsion = 22898.138539 eV Total energy + Delta-G solvation = -3861.604660 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.69372 -41.08795 -39.08631 -38.85616 -38.36258 -35.27508 -34.38066 -34.29252 -33.20432 -32.10412 -29.56888 -28.67393 -27.40275 -25.87781 -24.33964 -23.50067 -23.18856 -22.09041 -21.19043 -20.04006 -19.90095 -18.98884 -18.54036 -17.92234 -17.22097 -17.16852 -16.99822 -16.36376 -16.06897 -15.63524 -15.54745 -15.21996 -14.92821 -14.91512 -14.58824 -14.28876 -14.22373 -14.02394 -13.84559 -13.65310 -13.26892 -13.03092 -12.85165 -12.74481 -12.61877 -12.17529 -12.08567 -12.00265 -11.74906 -11.55271 -11.27520 -11.04542 -10.74188 -10.53586 -10.50790 -10.37917 -9.99091 -9.51302 -8.33254 -6.34714 -1.17037 -0.72687 0.47483 1.25077 1.28976 1.37121 1.44880 1.96878 2.04040 2.15238 2.31380 2.76792 2.82305 2.95537 3.04818 3.33426 3.37799 3.56937 3.68331 3.87492 3.94177 4.03607 4.17948 4.26620 4.42158 4.45461 4.50696 4.60753 4.70962 4.73696 4.80662 4.88787 4.93385 4.93528 5.03323 5.04796 5.24099 5.25657 5.32650 5.41527 5.54191 5.67385 5.77257 6.29361 6.42313 6.49736 6.72392 6.89511 7.06956 7.32744 8.80677 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018298 B = 0.002974 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.866343 B = 9412.907980 C = 9747.711262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.336 3.664 3 N -0.555 5.555 4 C 0.424 3.576 5 O -0.465 6.465 6 C -0.178 4.178 7 C -0.049 4.049 8 C -0.102 4.102 9 C -0.084 4.084 10 C 0.545 3.455 11 O -0.579 6.579 12 N -0.688 5.688 13 C 0.155 3.845 14 C -0.043 4.043 15 C -0.475 4.475 16 H 0.053 0.947 17 C 0.039 3.961 18 N -0.934 5.934 19 Si 0.911 3.089 20 H -0.291 1.291 21 H -0.298 1.298 22 H -0.229 1.229 23 C -0.152 4.152 24 C -0.186 4.186 25 C -0.056 4.056 26 C 0.153 3.847 27 N -0.531 5.531 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.438 0.562 32 H 0.181 0.819 33 H 0.156 0.844 34 H 0.416 0.584 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.264 0.736 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.497 10.219 10.590 21.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.068 3.932 3 N -0.282 5.282 4 C 0.222 3.778 5 O -0.277 6.277 6 C -0.184 4.184 7 C -0.069 4.069 8 C -0.120 4.120 9 C -0.090 4.090 10 C 0.332 3.668 11 O -0.461 6.461 12 N -0.338 5.338 13 C 0.032 3.968 14 C -0.044 4.044 15 C -0.512 4.512 16 H 0.071 0.929 17 C -0.160 4.160 18 N -0.573 5.573 19 Si 0.739 3.261 20 H -0.218 1.218 21 H -0.225 1.225 22 H -0.152 1.152 23 C -0.189 4.189 24 C -0.224 4.224 25 C -0.075 4.075 26 C 0.028 3.972 27 N -0.248 5.248 28 H 0.124 0.876 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.304 0.696 32 H 0.198 0.802 33 H 0.173 0.827 34 H 0.254 0.746 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.798 9.340 9.759 21.556 hybrid contribution 1.252 -0.454 -0.510 1.427 sum -15.545 8.886 9.249 20.154 Atomic orbital electron populations 1.20769 0.82694 1.05240 1.05420 1.23718 0.99525 0.81463 0.88472 1.67842 1.10416 1.31376 1.18523 1.19684 0.86592 0.85369 0.86177 1.84600 1.75427 1.31055 1.36605 1.19874 0.97127 0.94030 1.07333 1.21106 0.91032 0.99946 0.94778 1.21323 1.01803 0.90614 0.98267 1.20019 0.93621 0.93535 1.01836 1.18610 0.82575 0.88891 0.76686 1.90725 1.69376 1.33835 1.52178 1.45748 1.05391 1.12223 1.70388 1.21030 0.91151 0.85411 0.99249 1.19436 0.90247 1.00467 0.94256 1.20397 1.33106 1.07107 0.90615 0.92893 1.25474 0.94896 0.98733 0.96903 1.69984 1.47813 1.37216 1.02268 0.86350 0.77074 0.83610 0.79069 1.21849 1.22505 1.15186 1.22848 1.03061 1.00219 0.92810 1.23118 1.00774 0.92915 1.05595 1.21015 0.92407 0.97337 0.96790 1.18795 0.89673 0.92649 0.96131 1.68645 1.08204 1.30262 1.17691 0.87603 0.88192 0.88813 0.69641 0.80164 0.82676 0.74597 0.94892 0.91400 0.92642 0.89246 0.88183 0.89091 0.89838 0.83950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.28 71.23 0.73 -0.42 16 2 C 0.34 7.58 7.62 138.76 1.06 8.64 16 3 N -0.56 -12.34 10.30 -299.82 -3.09 -15.42 16 4 C 0.42 8.54 7.89 85.44 0.67 9.21 16 5 O -0.46 -6.18 12.91 -85.67 -1.11 -7.29 16 6 C -0.18 -4.06 5.76 -21.16 -0.12 -4.18 16 7 C -0.05 -0.94 9.58 22.22 0.21 -0.73 16 8 C -0.10 -2.40 9.42 22.30 0.21 -2.19 16 9 C -0.08 -2.51 5.87 -20.09 -0.12 -2.63 16 10 C 0.55 19.93 7.76 86.83 0.67 20.60 16 11 O -0.58 -25.00 16.30 -3.83 -0.06 -25.06 16 12 N -0.69 -24.81 5.41 -465.82 -2.52 -27.33 16 13 C 0.16 6.23 5.06 86.38 0.44 6.67 16 14 C -0.04 -1.74 0.85 -52.93 -0.04 -1.78 16 15 C -0.47 -23.72 9.20 25.60 0.24 -23.48 16 16 H 0.05 2.88 8.06 -2.91 -0.02 2.86 16 17 C 0.04 2.12 5.46 84.66 0.46 2.58 16 18 N -0.93 -54.42 13.96 21.45 0.30 -54.12 16 19 Si 0.91 43.43 24.64 68.60 1.69 45.12 16 20 H -0.29 -14.42 6.96 99.48 0.69 -13.73 16 21 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 22 H -0.23 -9.93 6.18 99.48 0.62 -9.31 16 23 C -0.15 -5.05 9.96 30.62 0.30 -4.75 16 24 C -0.19 -6.73 8.81 30.62 0.27 -6.46 16 25 C -0.06 -1.67 9.58 22.80 0.22 -1.45 16 26 C 0.15 4.24 6.61 40.09 0.26 4.51 16 27 N -0.53 -14.36 10.32 -181.79 -1.88 -16.24 16 28 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.44 0.78 9.06 -74.06 -0.67 0.11 16 32 H 0.18 2.19 7.70 -2.91 -0.02 2.17 16 33 H 0.16 3.31 6.42 -2.91 -0.02 3.29 16 34 H 0.42 13.47 6.39 -92.71 -0.59 12.88 16 35 H 0.03 1.51 4.12 -2.39 -0.01 1.50 16 36 H 0.07 2.55 8.06 -2.39 -0.02 2.53 16 37 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 39 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 40 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 41 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 42 H 0.14 4.53 7.63 -2.91 -0.02 4.51 16 Total: -1.00 -72.35 356.52 -1.47 -73.81 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -0.27 Total: 22.41 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 5.47 Total: 4.13 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -7.19 Total: -113.12 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -1.17 Total: -32.35 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.69 Total: 45.12 kcal Total: -72.35 -1.47 -73.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890357606.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.512 kcal (2) G-P(sol) polarization free energy of solvation -72.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds