Wall clock time and date at job start Tue Mar 31 2020 14:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21318 * 120.00328 * 2 1 4 4 C 1.46627 * 119.99507 * 180.02562 * 2 1 3 5 5 C 1.38648 * 126.50837 * 266.21115 * 4 2 1 6 6 C 1.50707 * 125.81572 * 0.04084 * 5 4 2 7 7 N 1.34145 * 108.36691 * 179.79294 * 5 4 2 8 8 H 0.96995 * 125.34927 * 180.24473 * 7 5 4 9 9 C 1.37860 * 109.29550 * 0.40049 * 7 5 4 10 10 C 1.46657 * 125.81091 * 179.85930 * 9 7 5 11 11 O 1.21702 * 119.99911 * 219.50288 * 10 9 7 12 12 N 1.34773 * 120.00187 * 39.50120 * 10 9 7 13 13 C 1.36995 * 120.00250 * 186.16983 * 12 10 9 14 14 H 1.08004 * 120.00058 * 231.98615 * 13 12 10 15 15 C 1.38944 * 120.00289 * 51.99481 * 13 12 10 16 16 N 1.31395 * 120.00266 * 33.34484 * 15 13 12 17 17 Si 1.86802 * 120.00137 * 213.34849 * 15 13 12 18 18 H 1.48502 * 109.47337 * 89.99536 * 17 15 13 19 19 H 1.48496 * 109.47434 * 209.99524 * 17 15 13 20 20 H 1.48499 * 109.47135 * 329.99880 * 17 15 13 21 21 C 1.39316 * 119.99813 * 6.16645 * 12 10 9 22 22 C 1.39100 * 119.70090 * 38.85499 * 21 12 10 23 23 C 1.38371 * 119.09887 * 179.74533 * 22 21 12 24 24 C 1.38836 * 118.49278 * 0.49565 * 23 22 21 25 25 C 1.38150 * 119.31426 * 359.47854 * 24 23 22 26 26 N 1.31875 * 120.85661 * 0.27803 * 25 24 23 27 27 C 1.36390 * 108.37675 * 359.59681 * 9 7 5 28 28 C 1.50697 * 126.51094 * 180.23655 * 27 9 7 29 29 H 1.08997 * 109.47127 * 184.98291 * 1 2 3 30 30 H 1.09000 * 109.46612 * 304.98023 * 1 2 3 31 31 H 1.09000 * 109.47211 * 64.97848 * 1 2 3 32 32 H 1.08993 * 109.47272 * 88.12186 * 6 5 4 33 33 H 1.09004 * 109.46521 * 208.12120 * 6 5 4 34 34 H 1.09001 * 109.47049 * 328.11675 * 6 5 4 35 35 H 0.96999 * 120.00615 * 184.44011 * 16 15 13 36 36 H 1.07999 * 120.44709 * 359.97438 * 22 21 12 37 37 H 1.07997 * 120.75238 * 180.25453 * 23 22 21 38 38 H 1.07994 * 120.34116 * 179.75603 * 24 23 22 39 39 H 1.08005 * 119.56790 * 180.25264 * 25 24 23 40 40 H 1.08999 * 109.46958 * 90.02847 * 28 27 9 41 41 H 1.09002 * 109.47123 * 210.02607 * 28 27 9 42 42 H 1.08998 * 109.47468 * 330.02708 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2400 -1.2699 -0.0006 5 6 2.7162 -1.9480 1.1111 6 6 2.5688 -1.5053 2.5441 7 7 3.3256 -3.0679 0.6941 8 1 3.7445 -3.7265 1.2700 9 6 3.2658 -3.1339 -0.6816 10 6 3.8217 -4.2056 -1.5142 11 8 4.3669 -3.9364 -2.5685 12 7 3.7287 -5.4885 -1.1119 13 6 4.3564 -6.4767 -1.8235 14 1 3.8016 -7.3454 -2.1461 15 6 5.7067 -6.3616 -2.1300 16 7 6.5218 -5.7615 -1.2922 17 14 6.3634 -7.0599 -3.7333 18 1 6.2890 -6.0219 -4.7927 19 1 7.7761 -7.4787 -3.5491 20 1 5.5470 -8.2342 -4.1330 21 6 2.9945 -5.8097 0.0276 22 6 1.7986 -5.1480 0.2861 23 6 1.0767 -5.4807 1.4188 24 6 1.5826 -6.4601 2.2627 25 6 2.7770 -7.0767 1.9438 26 7 3.4410 -6.7425 0.8545 27 6 2.5967 -2.0358 -1.1361 28 6 2.2945 -1.7014 -2.5741 29 1 -0.3633 -1.0237 0.0893 30 1 -0.3632 0.5892 0.8420 31 1 -0.3633 0.4347 -0.9312 32 1 1.6294 -1.8840 2.9466 33 1 3.3996 -1.8955 3.1321 34 1 2.5711 -0.4163 2.5901 35 1 7.4510 -5.6238 -1.5341 36 1 1.4366 -4.3876 -0.3900 37 1 0.1428 -4.9868 1.6432 38 1 1.0458 -6.7402 3.1569 39 1 3.1723 -7.8421 2.5953 40 1 1.3337 -2.1336 -2.8534 41 1 2.2549 -0.6188 -2.6948 42 1 3.0765 -2.1099 -3.2142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892466762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:26 Heat of formation + Delta-G solvation = 25.855401 kcal Electronic energy + Delta-G solvation = -28717.004565 eV Core-core repulsion = 24856.751014 eV Total energy + Delta-G solvation = -3860.253551 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.54400 -39.72596 -38.64421 -38.00209 -34.78496 -32.69661 -32.49996 -31.93193 -31.42841 -29.81673 -29.28477 -27.61520 -26.67293 -24.79045 -23.18873 -22.59907 -22.23801 -20.65738 -19.07637 -18.44956 -17.76194 -17.69654 -15.93415 -15.85928 -15.61710 -15.12641 -15.11403 -14.77982 -14.62602 -14.21717 -14.16124 -13.97321 -13.61004 -13.27072 -13.03612 -12.90754 -12.73380 -12.59978 -12.55986 -12.29749 -12.08559 -12.04324 -11.88231 -11.73982 -11.44564 -11.17902 -11.13586 -10.82979 -10.38718 -9.70573 -9.50012 -9.24408 -9.04470 -8.76545 -8.58950 -8.40221 -7.68024 -7.37878 -6.50127 -4.21745 1.54987 1.81715 2.02719 2.13872 2.67919 3.20620 3.31871 3.33076 3.36589 3.92963 4.00415 4.34144 4.45207 4.49312 4.87166 4.92167 5.13776 5.15634 5.18526 5.22164 5.30578 5.37025 5.45864 5.51849 5.55665 5.59386 5.67215 5.74074 5.81913 5.97826 5.99812 6.07882 6.15938 6.20298 6.37103 6.49722 6.59493 6.66076 7.00815 7.08742 7.22901 7.42279 7.63503 7.65616 7.96395 8.27619 8.64515 8.88325 9.19281 9.62864 10.53489 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012335 B = 0.005502 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.379022 B = 5087.847289 C = 6566.163833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.443 3.557 3 O -0.462 6.462 4 C -0.258 4.258 5 C 0.075 3.925 6 C -0.090 4.090 7 N -0.511 5.511 8 H 0.419 0.581 9 C -0.015 4.015 10 C 0.569 3.431 11 O -0.504 6.504 12 N -0.376 5.376 13 C -0.350 4.350 14 H 0.090 0.910 15 C 0.090 3.910 16 N -0.820 5.820 17 Si 0.911 3.089 18 H -0.269 1.269 19 H -0.286 1.286 20 H -0.268 1.268 21 C 0.349 3.651 22 C -0.215 4.215 23 C -0.058 4.058 24 C -0.233 4.233 25 C 0.121 3.879 26 N -0.481 5.481 27 C -0.072 4.072 28 C -0.093 4.093 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.271 0.729 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.146 0.854 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.459 5.111 8.267 15.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.319 3.681 3 O -0.336 6.336 4 C -0.266 4.266 5 C -0.045 4.045 6 C -0.147 4.147 7 N -0.105 5.105 8 H 0.257 0.743 9 C -0.128 4.128 10 C 0.357 3.643 11 O -0.378 6.378 12 N -0.088 5.088 13 C -0.475 4.475 14 H 0.107 0.893 15 C -0.124 4.124 16 N -0.450 5.450 17 Si 0.736 3.264 18 H -0.194 1.194 19 H -0.212 1.212 20 H -0.192 1.192 21 C 0.121 3.879 22 C -0.239 4.239 23 C -0.084 4.084 24 C -0.255 4.255 25 C -0.040 4.040 26 N -0.195 5.195 27 C -0.079 4.079 28 C -0.150 4.150 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.163 0.837 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.662 5.311 7.494 14.073 hybrid contribution -0.144 -0.470 0.041 0.493 sum -10.806 4.841 7.535 14.035 Atomic orbital electron populations 1.22228 0.94197 1.04671 1.04211 1.21698 0.90939 0.86698 0.68791 1.90533 1.72618 1.34695 1.35704 1.19630 1.13477 1.00488 0.93026 1.20412 1.00038 0.88921 0.95166 1.20413 1.02856 1.02234 0.89228 1.41803 1.42995 1.18854 1.06830 0.74252 1.20176 1.10179 1.00509 0.81949 1.17190 0.80657 0.81278 0.85127 1.90688 1.42183 1.81675 1.23216 1.41134 1.43748 1.06401 1.17556 1.18950 0.92217 1.03489 1.32814 0.89262 1.25366 0.95377 0.94881 0.96778 1.70105 1.05206 1.37931 1.31738 0.86240 0.77473 0.79367 0.83359 1.19407 1.21178 1.19221 1.19419 0.90073 0.91566 0.86878 1.21937 0.96203 1.04689 1.01118 1.21192 0.98328 0.95525 0.93361 1.21809 0.99872 1.01536 1.02327 1.22555 0.91325 0.96981 0.93099 1.67487 1.32916 1.16229 1.02861 1.19296 1.01111 0.92814 0.94707 1.20331 1.02457 1.00859 0.91325 0.89816 0.89410 0.89040 0.90311 0.91167 0.90196 0.91878 0.85103 0.85875 0.86009 0.83651 0.91722 0.92327 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.85 10.32 36.01 0.37 -1.48 16 2 C 0.44 6.22 6.46 -30.93 -0.20 6.02 16 3 O -0.46 -7.93 17.86 5.52 0.10 -7.83 16 4 C -0.26 -4.08 5.71 -105.11 -0.60 -4.68 16 5 C 0.08 1.12 7.22 -81.43 -0.59 0.53 16 6 C -0.09 -0.96 10.22 36.01 0.37 -0.59 16 7 N -0.51 -8.85 4.07 -5.55 -0.02 -8.88 16 8 H 0.42 7.38 7.82 -40.82 -0.32 7.06 16 9 C -0.01 -0.30 4.09 -82.42 -0.34 -0.64 16 10 C 0.57 13.99 6.74 -12.86 -0.09 13.90 16 11 O -0.50 -13.86 14.68 5.19 0.08 -13.78 16 12 N -0.38 -9.37 2.65 -62.10 -0.16 -9.53 16 13 C -0.35 -9.53 8.48 -14.98 -0.13 -9.66 16 14 H 0.09 2.43 8.01 -52.48 -0.42 2.01 16 15 C 0.09 2.47 4.14 -17.48 -0.07 2.39 16 16 N -0.82 -23.28 13.59 55.49 0.75 -22.53 16 17 Si 0.91 21.47 29.66 -169.99 -5.04 16.43 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 C 0.35 7.50 5.45 -154.72 -0.84 6.66 16 22 C -0.22 -3.77 6.88 -39.21 -0.27 -4.04 16 23 C -0.06 -0.81 10.17 -39.31 -0.40 -1.21 16 24 C -0.23 -3.16 10.11 -39.39 -0.40 -3.56 16 25 C 0.12 1.97 11.18 -17.57 -0.20 1.77 16 26 N -0.48 -10.24 9.94 -12.35 -0.12 -10.37 16 27 C -0.07 -1.32 6.13 -104.04 -0.64 -1.95 16 28 C -0.09 -1.54 10.00 36.00 0.36 -1.18 16 29 H 0.08 0.70 7.99 -51.93 -0.41 0.29 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.82 7.98 -51.93 -0.41 0.41 16 35 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.13 2.31 6.24 -52.49 -0.33 1.98 16 37 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 39 H 0.15 1.95 8.06 -52.48 -0.42 1.53 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.88 8.05 -51.93 -0.42 0.46 16 42 H 0.08 1.62 6.60 -51.93 -0.34 1.28 16 LS Contribution 363.00 15.07 5.47 5.47 Total: -1.00 -33.50 363.00 -7.79 -41.29 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -5.18 Total: 7.44 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -3.66 Total: 2.30 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 0.44 Total: -51.31 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: 0.17 Total: -21.61 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.04 Total: 16.43 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.50 -7.79 -41.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892466762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.141 kcal (2) G-P(sol) polarization free energy of solvation -33.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds