Wall clock time and date at job start Tue Mar 31 2020 14:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21318 * 120.00328 * 2 1 4 4 C 1.46627 * 119.99507 * 180.02562 * 2 1 3 5 5 C 1.38648 * 126.50837 * 266.21115 * 4 2 1 6 6 C 1.50707 * 125.81572 * 0.04084 * 5 4 2 7 7 N 1.34145 * 108.36691 * 179.79294 * 5 4 2 8 8 H 0.96995 * 125.34927 * 180.24473 * 7 5 4 9 9 C 1.37860 * 109.29550 * 0.40049 * 7 5 4 10 10 C 1.46657 * 125.81091 * 179.85930 * 9 7 5 11 11 O 1.21702 * 119.99911 * 219.50288 * 10 9 7 12 12 N 1.34773 * 120.00187 * 39.50120 * 10 9 7 13 13 C 1.36995 * 120.00250 * 186.16983 * 12 10 9 14 14 H 1.08004 * 120.00058 * 231.98615 * 13 12 10 15 15 C 1.38944 * 120.00289 * 51.99481 * 13 12 10 16 16 N 1.31395 * 120.00266 * 33.34484 * 15 13 12 17 17 Si 1.86802 * 120.00137 * 213.34849 * 15 13 12 18 18 H 1.48502 * 109.47337 * 89.99536 * 17 15 13 19 19 H 1.48496 * 109.47434 * 209.99524 * 17 15 13 20 20 H 1.48499 * 109.47135 * 329.99880 * 17 15 13 21 21 C 1.39316 * 119.99813 * 6.16645 * 12 10 9 22 22 C 1.39100 * 119.70090 * 38.85499 * 21 12 10 23 23 C 1.38371 * 119.09887 * 179.74533 * 22 21 12 24 24 C 1.38836 * 118.49278 * 0.49565 * 23 22 21 25 25 C 1.38150 * 119.31426 * 359.47854 * 24 23 22 26 26 N 1.31875 * 120.85661 * 0.27803 * 25 24 23 27 27 C 1.36390 * 108.37675 * 359.59681 * 9 7 5 28 28 C 1.50697 * 126.51094 * 180.23655 * 27 9 7 29 29 H 1.08997 * 109.47127 * 184.98291 * 1 2 3 30 30 H 1.09000 * 109.46612 * 304.98023 * 1 2 3 31 31 H 1.09000 * 109.47211 * 64.97848 * 1 2 3 32 32 H 1.08993 * 109.47272 * 88.12186 * 6 5 4 33 33 H 1.09004 * 109.46521 * 208.12120 * 6 5 4 34 34 H 1.09001 * 109.47049 * 328.11675 * 6 5 4 35 35 H 0.96999 * 120.00615 * 184.44011 * 16 15 13 36 36 H 1.07999 * 120.44709 * 359.97438 * 22 21 12 37 37 H 1.07997 * 120.75238 * 180.25453 * 23 22 21 38 38 H 1.07994 * 120.34116 * 179.75603 * 24 23 22 39 39 H 1.08005 * 119.56790 * 180.25264 * 25 24 23 40 40 H 1.08999 * 109.46958 * 90.02847 * 28 27 9 41 41 H 1.09002 * 109.47123 * 210.02607 * 28 27 9 42 42 H 1.08998 * 109.47468 * 330.02708 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2400 -1.2699 -0.0006 5 6 2.7162 -1.9480 1.1111 6 6 2.5688 -1.5053 2.5441 7 7 3.3256 -3.0679 0.6941 8 1 3.7445 -3.7265 1.2700 9 6 3.2658 -3.1339 -0.6816 10 6 3.8217 -4.2056 -1.5142 11 8 4.3669 -3.9364 -2.5685 12 7 3.7287 -5.4885 -1.1119 13 6 4.3564 -6.4767 -1.8235 14 1 3.8016 -7.3454 -2.1461 15 6 5.7067 -6.3616 -2.1300 16 7 6.5218 -5.7615 -1.2922 17 14 6.3634 -7.0599 -3.7333 18 1 6.2890 -6.0219 -4.7927 19 1 7.7761 -7.4787 -3.5491 20 1 5.5470 -8.2342 -4.1330 21 6 2.9945 -5.8097 0.0276 22 6 1.7986 -5.1480 0.2861 23 6 1.0767 -5.4807 1.4188 24 6 1.5826 -6.4601 2.2627 25 6 2.7770 -7.0767 1.9438 26 7 3.4410 -6.7425 0.8545 27 6 2.5967 -2.0358 -1.1361 28 6 2.2945 -1.7014 -2.5741 29 1 -0.3633 -1.0237 0.0893 30 1 -0.3632 0.5892 0.8420 31 1 -0.3633 0.4347 -0.9312 32 1 1.6294 -1.8840 2.9466 33 1 3.3996 -1.8955 3.1321 34 1 2.5711 -0.4163 2.5901 35 1 7.4510 -5.6238 -1.5341 36 1 1.4366 -4.3876 -0.3900 37 1 0.1428 -4.9868 1.6432 38 1 1.0458 -6.7402 3.1569 39 1 3.1723 -7.8421 2.5953 40 1 1.3337 -2.1336 -2.8534 41 1 2.2549 -0.6188 -2.6948 42 1 3.0765 -2.1099 -3.2142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892466762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:25 Heat of formation + Delta-G solvation = 4.153978 kcal Electronic energy + Delta-G solvation = -28717.945609 eV Core-core repulsion = 24856.751014 eV Total energy + Delta-G solvation = -3861.194595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.91646 -41.14128 -39.91227 -39.56204 -36.52474 -34.32529 -34.01365 -33.30265 -32.63841 -30.78750 -30.68326 -28.77467 -28.25548 -26.44101 -24.57819 -23.96914 -23.48289 -22.12280 -20.53314 -19.78006 -19.37743 -19.11260 -17.50237 -17.18533 -16.99728 -16.54820 -16.34039 -16.23256 -16.12406 -15.68726 -15.42323 -15.25411 -15.15339 -14.60209 -14.49526 -14.10733 -14.04433 -13.83412 -13.74706 -13.61457 -13.28676 -13.19370 -13.07194 -12.94048 -12.90859 -12.79149 -12.61694 -12.43295 -12.21602 -11.10798 -10.95030 -10.73231 -10.71305 -10.46777 -10.10356 -9.73538 -9.15425 -8.94064 -8.47577 -6.26419 0.18572 0.54439 0.76747 0.95328 1.28627 1.38275 1.43487 1.44116 1.89020 2.18793 2.45335 2.64166 2.86710 3.19745 3.34255 3.70678 3.78896 3.94695 4.06864 4.15837 4.19411 4.34699 4.39949 4.43285 4.48902 4.68056 4.70472 4.73681 4.77515 4.86499 4.89409 4.94784 4.99877 5.07069 5.19031 5.26793 5.32210 5.33369 5.40661 5.71308 5.79148 5.90703 6.06327 6.35435 6.56105 6.59300 6.77638 7.12200 7.55992 7.80003 8.52636 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012335 B = 0.005502 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.379022 B = 5087.847289 C = 6566.163833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.449 3.551 3 O -0.500 6.500 4 C -0.272 4.272 5 C 0.100 3.900 6 C -0.090 4.090 7 N -0.510 5.510 8 H 0.415 0.585 9 C -0.053 4.053 10 C 0.561 3.439 11 O -0.561 6.561 12 N -0.396 5.396 13 C -0.366 4.366 14 H 0.073 0.927 15 C 0.049 3.951 16 N -0.860 5.860 17 Si 0.961 3.039 18 H -0.283 1.283 19 H -0.275 1.275 20 H -0.254 1.254 21 C 0.319 3.681 22 C -0.206 4.206 23 C -0.046 4.046 24 C -0.194 4.194 25 C 0.102 3.898 26 N -0.529 5.529 27 C -0.070 4.070 28 C -0.090 4.090 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.268 0.732 36 H 0.126 0.874 37 H 0.172 0.828 38 H 0.173 0.827 39 H 0.170 0.830 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.387 5.770 11.712 20.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.327 3.673 3 O -0.376 6.376 4 C -0.280 4.280 5 C -0.022 4.022 6 C -0.147 4.147 7 N -0.104 5.104 8 H 0.253 0.747 9 C -0.165 4.165 10 C 0.352 3.648 11 O -0.439 6.439 12 N -0.110 5.110 13 C -0.492 4.492 14 H 0.091 0.909 15 C -0.160 4.160 16 N -0.493 5.493 17 Si 0.784 3.216 18 H -0.209 1.209 19 H -0.200 1.200 20 H -0.177 1.177 21 C 0.092 3.908 22 C -0.229 4.229 23 C -0.072 4.072 24 C -0.215 4.215 25 C -0.057 4.057 26 N -0.243 5.243 27 C -0.077 4.077 28 C -0.147 4.147 29 H 0.117 0.883 30 H 0.130 0.870 31 H 0.123 0.877 32 H 0.133 0.867 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.144 0.856 37 H 0.189 0.811 38 H 0.190 0.810 39 H 0.187 0.813 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.643 5.907 10.993 19.240 hybrid contribution 0.833 -0.680 -0.754 1.313 sum -13.810 5.227 10.239 17.969 Atomic orbital electron populations 1.22235 0.89908 1.06344 1.05863 1.22214 0.92937 0.84998 0.67146 1.90535 1.73824 1.35502 1.37768 1.19954 1.14399 1.01356 0.92268 1.21208 0.96827 0.87020 0.97156 1.20639 1.05089 1.02782 0.86155 1.41748 1.43371 1.19677 1.05621 0.74701 1.19622 1.13240 1.00566 0.83076 1.17692 0.79927 0.82021 0.85165 1.90617 1.45013 1.82608 1.25707 1.41152 1.44392 1.06088 1.19363 1.18880 0.92207 1.03571 1.34515 0.90883 1.26060 0.95609 0.95384 0.98962 1.70169 1.05146 1.40854 1.33105 0.85470 0.77624 0.78705 0.79775 1.20949 1.20026 1.17715 1.19413 0.90843 0.93276 0.87249 1.21942 0.94765 1.03944 1.02294 1.21724 0.99164 0.95045 0.91301 1.22339 0.97785 0.98645 1.02734 1.23126 0.92574 0.97979 0.91975 1.67332 1.35378 1.16921 1.04712 1.19577 1.00037 0.92270 0.95865 1.20321 1.02395 1.01648 0.90377 0.88302 0.86964 0.87744 0.86681 0.90284 0.89464 0.92282 0.85582 0.81098 0.80953 0.81264 0.89461 0.90848 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.69 10.32 71.24 0.73 -1.95 16 2 C 0.45 11.36 6.46 27.88 0.18 11.54 16 3 O -0.50 -16.29 17.86 -3.15 -0.06 -16.34 16 4 C -0.27 -8.11 5.71 -20.18 -0.12 -8.22 16 5 C 0.10 2.71 7.22 42.31 0.31 3.01 16 6 C -0.09 -1.51 10.22 71.24 0.73 -0.78 16 7 N -0.51 -17.45 4.07 -171.47 -0.70 -18.15 16 8 H 0.42 14.61 7.82 -92.71 -0.73 13.88 16 9 C -0.05 -2.22 4.09 39.96 0.16 -2.06 16 10 C 0.56 29.52 6.74 86.44 0.58 30.10 16 11 O -0.56 -33.61 14.68 -4.36 -0.06 -33.67 16 12 N -0.40 -20.96 2.65 -468.60 -1.24 -22.21 16 13 C -0.37 -21.34 8.48 84.06 0.71 -20.63 16 14 H 0.07 4.30 8.01 -2.91 -0.02 4.27 16 15 C 0.05 2.87 4.14 84.93 0.35 3.22 16 16 N -0.86 -52.25 13.59 21.66 0.29 -51.95 16 17 Si 0.96 46.81 29.66 68.60 2.03 48.85 16 18 H -0.28 -14.31 7.11 99.48 0.71 -13.60 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.25 -11.55 7.11 99.48 0.71 -10.85 16 21 C 0.32 13.96 5.45 132.94 0.72 14.69 16 22 C -0.21 -6.87 6.88 22.51 0.15 -6.71 16 23 C -0.05 -1.06 10.17 22.44 0.23 -0.83 16 24 C -0.19 -4.17 10.11 22.39 0.23 -3.95 16 25 C 0.10 3.07 11.18 84.67 0.95 4.01 16 26 N -0.53 -22.71 9.94 -193.00 -1.92 -24.63 16 27 C -0.07 -2.56 6.13 -19.49 -0.12 -2.68 16 28 C -0.09 -3.08 10.00 71.23 0.71 -2.37 16 29 H 0.10 1.15 7.99 -2.39 -0.02 1.13 16 30 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.09 1.43 7.98 -2.39 -0.02 1.41 16 35 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 36 H 0.13 4.34 6.24 -2.91 -0.02 4.32 16 37 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 38 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.17 4.06 8.06 -2.91 -0.02 4.04 16 40 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.07 2.21 8.05 -2.39 -0.02 2.19 16 42 H 0.05 2.12 6.60 -2.39 -0.02 2.11 16 Total: -1.00 -83.51 363.00 5.21 -78.30 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.34 Total: 23.41 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 6.52 Total: 16.40 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -3.57 Total: -116.94 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -0.12 Total: -50.01 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.85 kcal Total: -83.51 5.21 -78.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892466762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.451 kcal (2) G-P(sol) polarization free energy of solvation -83.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds