Wall clock time and date at job start Tue Mar 31 2020 15:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31984 * 120.04576 * 2 1 4 4 C 1.32219 * 120.07886 * 179.97438 * 3 2 1 5 5 C 1.38261 * 120.15935 * 0.02562 * 4 3 2 6 6 N 1.32180 * 120.09898 * 359.97438 * 5 4 3 7 7 C 1.32634 * 119.92030 * 0.02562 * 6 5 4 8 8 N 1.39404 * 120.08276 * 180.02562 * 7 6 5 9 9 C 1.46499 * 119.99634 * 265.13713 * 8 7 6 10 10 C 1.34775 * 120.00189 * 85.13134 * 8 7 6 11 11 O 1.21274 * 120.00216 * 0.02562 * 10 8 7 12 12 C 1.50710 * 119.99703 * 180.02562 * 10 8 7 13 13 C 1.50696 * 109.46707 * 180.02562 * 12 10 8 14 14 C 1.38316 * 119.96808 * 269.72111 * 13 12 10 15 15 C 1.38285 * 120.14021 * 179.76542 * 14 13 12 16 16 C 1.38119 * 120.06482 * 0.51738 * 15 14 13 17 17 C 1.38854 * 119.93580 * 359.74274 * 16 15 14 18 18 O 1.35745 * 120.07307 * 179.97438 * 17 16 15 19 19 C 1.34832 * 116.99982 * 5.57915 * 18 17 16 20 20 H 1.07994 * 119.99848 * 354.94699 * 19 18 17 21 21 C 1.38654 * 119.99851 * 174.94379 * 19 18 17 22 22 N 1.31561 * 119.99644 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00208 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.46940 * 90.00156 * 23 21 19 25 25 H 1.48501 * 109.46913 * 210.00194 * 23 21 19 26 26 H 1.48495 * 109.47063 * 329.99803 * 23 21 19 27 27 C 1.38080 * 119.96328 * 90.00384 * 13 12 10 28 28 H 1.08999 * 109.47235 * 274.96189 * 1 2 3 29 29 H 1.09001 * 109.47461 * 34.96607 * 1 2 3 30 30 H 1.09004 * 109.47185 * 154.95887 * 1 2 3 31 31 H 1.07991 * 119.91850 * 180.02562 * 4 3 2 32 32 H 1.08005 * 119.94968 * 180.28129 * 5 4 3 33 33 H 1.08999 * 109.47343 * 95.15937 * 9 8 7 34 34 H 1.09007 * 109.47326 * 215.15990 * 9 8 7 35 35 H 1.08997 * 109.47257 * 335.15903 * 9 8 7 36 36 H 1.08999 * 109.46846 * 299.99905 * 12 10 8 37 37 H 1.08998 * 109.47010 * 60.00056 * 12 10 8 38 38 H 1.08004 * 119.93115 * 0.02562 * 14 13 12 39 39 H 1.08003 * 119.96699 * 180.25568 * 15 14 13 40 40 H 1.08006 * 120.03447 * 179.71978 * 16 15 14 41 41 H 0.96995 * 119.99859 * 180.02562 * 22 21 19 42 42 H 1.08005 * 120.03737 * 359.95113 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1425 0.0000 4 6 3.4900 1.1432 0.0005 5 6 4.1853 -0.0518 0.0005 6 7 3.5303 -1.1999 0.0005 7 6 2.2039 -1.2048 0.0000 8 7 1.5096 -2.4136 0.0005 9 6 1.0521 -2.9960 -1.2634 10 6 1.2594 -3.0465 1.1638 11 8 1.6379 -2.5643 2.2102 12 6 0.5093 -4.3537 1.1642 13 6 0.3625 -4.8480 2.5802 14 6 1.3279 -5.6737 3.1274 15 6 1.1992 -6.1255 4.4280 16 6 0.1000 -5.7618 5.1812 17 6 -0.8736 -4.9375 4.6331 18 8 -1.9552 -4.5788 5.3707 19 6 -1.9682 -4.9605 6.6638 20 1 -1.1825 -5.5942 7.0476 21 6 -2.9904 -4.5393 7.5007 22 7 -3.0027 -4.9114 8.7625 23 14 -4.3498 -3.4437 6.8366 24 1 -5.4569 -4.2873 6.3190 25 1 -4.8591 -2.5718 7.9254 26 1 -3.8139 -2.6011 5.7375 27 6 -0.7387 -4.4810 3.3281 28 1 -0.3634 0.0889 1.0238 29 1 -0.3634 0.8421 -0.5889 30 1 -0.3634 -0.9311 -0.4350 31 1 4.0281 2.0796 0.0009 32 1 5.2654 -0.0472 0.0055 33 1 1.7864 -3.7197 -1.6170 34 1 0.0955 -3.4952 -1.1084 35 1 0.9337 -2.2065 -2.0055 36 1 -0.4782 -4.2060 0.7271 37 1 1.0602 -5.0889 0.5776 38 1 2.1862 -5.9628 2.5390 39 1 1.9568 -6.7667 4.8538 40 1 -0.0022 -6.1186 6.1955 41 1 -3.7179 -4.6171 9.3479 42 1 -1.4941 -3.8393 2.8991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893286625.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:09 Heat of formation + Delta-G solvation = 29.798568 kcal Electronic energy + Delta-G solvation = -26846.826915 eV Core-core repulsion = 22986.744352 eV Total energy + Delta-G solvation = -3860.082563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.71971 -39.93642 -38.95797 -36.77101 -35.97619 -34.81229 -32.77069 -32.34270 -31.69631 -29.44497 -28.59633 -27.41777 -27.08226 -25.21235 -24.41738 -23.19799 -21.83984 -21.13989 -19.82432 -18.29232 -17.76255 -17.62997 -17.14410 -16.94695 -16.34920 -15.62664 -15.16595 -15.08907 -14.89678 -14.66493 -14.04812 -13.90219 -13.65390 -13.47913 -13.36759 -13.14872 -13.07159 -12.91405 -12.56201 -12.52788 -12.46305 -12.16842 -11.87320 -11.75908 -11.35473 -11.30309 -10.83870 -10.81113 -10.69011 -10.14058 -10.09903 -9.88185 -9.39294 -9.34818 -8.93662 -8.84310 -8.14347 -7.33880 -6.37970 -4.04805 0.37720 0.80980 1.95743 2.29422 2.43953 2.55604 3.24907 3.26775 3.29179 3.42537 3.77187 4.01711 4.14984 4.26648 4.39407 4.58055 4.68199 4.78210 4.79458 4.80753 4.93833 4.99034 5.13753 5.14180 5.22413 5.30190 5.31516 5.37108 5.53479 5.66015 5.68514 5.81221 5.85729 6.13230 6.26298 6.34248 6.53413 6.79211 6.95068 6.98939 7.10789 7.22240 7.33758 7.45480 7.62411 7.83694 8.03430 8.07475 8.97446 9.60028 10.69944 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014873 B = 0.003035 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.128477 B = 9222.070043 C =10070.146135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.100 3.900 3 N -0.434 5.434 4 C 0.054 3.946 5 C 0.056 3.944 6 N -0.435 5.435 7 C 0.308 3.692 8 N -0.575 5.575 9 C 0.081 3.919 10 C 0.524 3.476 11 O -0.499 6.499 12 C -0.086 4.086 13 C -0.039 4.039 14 C -0.186 4.186 15 C -0.076 4.076 16 C -0.216 4.216 17 C 0.160 3.840 18 O -0.219 6.219 19 C -0.388 4.388 20 H 0.106 0.894 21 C 0.063 3.937 22 N -0.881 5.881 23 Si 0.905 3.095 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.260 1.260 27 C -0.173 4.173 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.174 0.826 32 H 0.173 0.827 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.133 0.867 41 H 0.279 0.721 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.744 6.856 -23.786 26.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.043 4.043 3 N -0.150 5.150 4 C -0.106 4.106 5 C -0.105 4.105 6 N -0.151 5.151 7 C 0.079 3.921 8 N -0.311 5.311 9 C -0.061 4.061 10 C 0.313 3.687 11 O -0.370 6.370 12 C -0.126 4.126 13 C -0.040 4.040 14 C -0.205 4.205 15 C -0.094 4.094 16 C -0.235 4.235 17 C 0.108 3.892 18 O -0.124 6.124 19 C -0.464 4.464 20 H 0.123 0.877 21 C -0.140 4.140 22 N -0.520 5.520 23 Si 0.730 3.270 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.184 1.184 27 C -0.192 4.192 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.191 0.809 32 H 0.190 0.810 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.129 0.871 40 H 0.150 0.850 41 H 0.089 0.911 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.614 7.221 -23.013 25.965 hybrid contribution -0.208 0.371 -0.012 0.426 sum 9.407 7.592 -23.025 26.005 Atomic orbital electron populations 1.20721 0.87301 1.03704 1.04312 1.22409 0.98727 0.88225 0.94901 1.68319 1.09044 1.28330 1.09276 1.23806 0.90701 1.00077 0.96012 1.23649 1.01848 0.87717 0.97281 1.68061 1.08663 1.30717 1.07640 1.18853 0.88105 0.86935 0.98244 1.45286 1.56189 1.21124 1.08453 1.21937 1.00704 0.99230 0.84199 1.21023 0.79429 0.86174 0.82125 1.90795 1.49715 1.65828 1.30666 1.20610 1.01366 0.93442 0.97142 1.18643 0.94811 0.97525 0.93036 1.20430 0.99653 1.04021 0.96433 1.20743 0.96669 0.98283 0.93687 1.21310 0.96391 1.03867 1.01962 1.18993 0.86717 0.92579 0.90877 1.83561 1.35934 1.69518 1.23432 1.20765 1.12671 1.31484 0.81461 0.87659 1.24457 0.98089 0.97217 0.94243 1.69649 1.33707 1.44555 1.04057 0.86186 0.81134 0.80620 0.79015 1.19883 1.20832 1.18362 1.19928 1.00129 1.05837 0.93355 0.89359 0.89854 0.90217 0.80882 0.81028 0.91647 0.89550 0.90839 0.87794 0.87805 0.87685 0.87124 0.84954 0.91106 0.86771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 10.03 36.00 0.36 -0.63 16 2 C 0.10 1.21 6.81 -82.18 -0.56 0.65 16 3 N -0.43 -5.05 10.42 -9.13 -0.10 -5.15 16 4 C 0.05 0.48 11.21 -17.38 -0.19 0.29 16 5 C 0.06 0.53 11.22 -17.39 -0.20 0.34 16 6 N -0.43 -5.64 10.53 -12.17 -0.13 -5.77 16 7 C 0.31 3.95 5.42 -154.41 -0.84 3.11 16 8 N -0.57 -6.58 2.10 -122.64 -0.26 -6.83 16 9 C 0.08 0.52 9.29 59.85 0.56 1.08 16 10 C 0.52 7.63 7.63 -10.98 -0.08 7.55 16 11 O -0.50 -9.98 16.00 5.56 0.09 -9.89 16 12 C -0.09 -1.05 4.45 -29.03 -0.13 -1.18 16 13 C -0.04 -0.68 4.37 -104.65 -0.46 -1.14 16 14 C -0.19 -3.28 9.70 -39.54 -0.38 -3.66 16 15 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 16 C -0.22 -4.86 9.17 -39.40 -0.36 -5.22 16 17 C 0.16 3.82 6.65 -39.11 -0.26 3.56 16 18 O -0.22 -5.92 8.59 0.06 0.00 -5.92 16 19 C -0.39 -11.19 9.95 30.89 0.31 -10.89 16 20 H 0.11 3.10 5.44 -52.49 -0.29 2.82 16 21 C 0.06 1.80 5.49 -17.51 -0.10 1.70 16 22 N -0.88 -25.93 13.96 55.48 0.77 -25.16 16 23 Si 0.90 22.05 28.62 -169.99 -4.86 17.18 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 27 C -0.17 -3.53 9.65 -39.39 -0.38 -3.91 16 28 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.63 6.59 -51.93 -0.34 0.29 16 31 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 32 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.37 6.66 -51.92 -0.35 0.02 16 35 H 0.07 0.38 8.01 -51.93 -0.42 -0.04 16 36 H 0.10 0.97 7.35 -51.93 -0.38 0.58 16 37 H 0.10 0.97 8.05 -51.93 -0.42 0.55 16 38 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 39 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 40 H 0.13 3.10 5.64 -52.48 -0.30 2.80 16 41 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.11 2.15 8.06 -52.48 -0.42 1.72 16 LS Contribution 363.36 15.07 5.48 5.48 Total: -1.00 -37.13 363.36 -7.12 -44.25 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.00 Total: 1.99 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -3.11 Total: -10.19 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.29 Total: -42.90 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.09 Total: -15.81 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.86 Total: 17.18 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.13 -7.12 -44.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893286625.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.050 kcal (2) G-P(sol) polarization free energy of solvation -37.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds