Wall clock time and date at job start Tue Mar 31 2020 15:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31984 * 120.04576 * 2 1 4 4 C 1.32219 * 120.07886 * 179.97438 * 3 2 1 5 5 C 1.38261 * 120.15935 * 0.02562 * 4 3 2 6 6 N 1.32180 * 120.09898 * 359.97438 * 5 4 3 7 7 C 1.32634 * 119.92030 * 0.02562 * 6 5 4 8 8 N 1.39404 * 120.08276 * 180.02562 * 7 6 5 9 9 C 1.46499 * 119.99634 * 265.13713 * 8 7 6 10 10 C 1.34775 * 120.00189 * 85.13134 * 8 7 6 11 11 O 1.21274 * 120.00216 * 0.02562 * 10 8 7 12 12 C 1.50710 * 119.99703 * 180.02562 * 10 8 7 13 13 C 1.50696 * 109.46707 * 180.02562 * 12 10 8 14 14 C 1.38316 * 119.96808 * 269.72111 * 13 12 10 15 15 C 1.38285 * 120.14021 * 179.76542 * 14 13 12 16 16 C 1.38119 * 120.06482 * 0.51738 * 15 14 13 17 17 C 1.38854 * 119.93580 * 359.74274 * 16 15 14 18 18 O 1.35745 * 120.07307 * 179.97438 * 17 16 15 19 19 C 1.34832 * 116.99982 * 5.57915 * 18 17 16 20 20 H 1.07994 * 119.99848 * 354.94699 * 19 18 17 21 21 C 1.38654 * 119.99851 * 174.94379 * 19 18 17 22 22 N 1.31561 * 119.99644 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00208 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.46940 * 90.00156 * 23 21 19 25 25 H 1.48501 * 109.46913 * 210.00194 * 23 21 19 26 26 H 1.48495 * 109.47063 * 329.99803 * 23 21 19 27 27 C 1.38080 * 119.96328 * 90.00384 * 13 12 10 28 28 H 1.08999 * 109.47235 * 274.96189 * 1 2 3 29 29 H 1.09001 * 109.47461 * 34.96607 * 1 2 3 30 30 H 1.09004 * 109.47185 * 154.95887 * 1 2 3 31 31 H 1.07991 * 119.91850 * 180.02562 * 4 3 2 32 32 H 1.08005 * 119.94968 * 180.28129 * 5 4 3 33 33 H 1.08999 * 109.47343 * 95.15937 * 9 8 7 34 34 H 1.09007 * 109.47326 * 215.15990 * 9 8 7 35 35 H 1.08997 * 109.47257 * 335.15903 * 9 8 7 36 36 H 1.08999 * 109.46846 * 299.99905 * 12 10 8 37 37 H 1.08998 * 109.47010 * 60.00056 * 12 10 8 38 38 H 1.08004 * 119.93115 * 0.02562 * 14 13 12 39 39 H 1.08003 * 119.96699 * 180.25568 * 15 14 13 40 40 H 1.08006 * 120.03447 * 179.71978 * 16 15 14 41 41 H 0.96995 * 119.99859 * 180.02562 * 22 21 19 42 42 H 1.08005 * 120.03737 * 359.95113 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1425 0.0000 4 6 3.4900 1.1432 0.0005 5 6 4.1853 -0.0518 0.0005 6 7 3.5303 -1.1999 0.0005 7 6 2.2039 -1.2048 0.0000 8 7 1.5096 -2.4136 0.0005 9 6 1.0521 -2.9960 -1.2634 10 6 1.2594 -3.0465 1.1638 11 8 1.6379 -2.5643 2.2102 12 6 0.5093 -4.3537 1.1642 13 6 0.3625 -4.8480 2.5802 14 6 1.3279 -5.6737 3.1274 15 6 1.1992 -6.1255 4.4280 16 6 0.1000 -5.7618 5.1812 17 6 -0.8736 -4.9375 4.6331 18 8 -1.9552 -4.5788 5.3707 19 6 -1.9682 -4.9605 6.6638 20 1 -1.1825 -5.5942 7.0476 21 6 -2.9904 -4.5393 7.5007 22 7 -3.0027 -4.9114 8.7625 23 14 -4.3498 -3.4437 6.8366 24 1 -5.4569 -4.2873 6.3190 25 1 -4.8591 -2.5718 7.9254 26 1 -3.8139 -2.6011 5.7375 27 6 -0.7387 -4.4810 3.3281 28 1 -0.3634 0.0889 1.0238 29 1 -0.3634 0.8421 -0.5889 30 1 -0.3634 -0.9311 -0.4350 31 1 4.0281 2.0796 0.0009 32 1 5.2654 -0.0472 0.0055 33 1 1.7864 -3.7197 -1.6170 34 1 0.0955 -3.4952 -1.1084 35 1 0.9337 -2.2065 -2.0055 36 1 -0.4782 -4.2060 0.7271 37 1 1.0602 -5.0889 0.5776 38 1 2.1862 -5.9628 2.5390 39 1 1.9568 -6.7667 4.8538 40 1 -0.0022 -6.1186 6.1955 41 1 -3.7179 -4.6171 9.3479 42 1 -1.4941 -3.8393 2.8991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893286625.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:08 Heat of formation + Delta-G solvation = 4.599459 kcal Electronic energy + Delta-G solvation = -26847.919630 eV Core-core repulsion = 22986.744352 eV Total energy + Delta-G solvation = -3861.175278 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.53526 -41.16013 -40.48332 -38.38507 -36.99931 -35.60802 -34.49548 -33.83571 -32.73808 -31.09131 -29.39524 -28.63374 -27.74020 -27.21454 -25.39088 -23.97920 -23.38137 -22.62522 -21.00293 -19.64525 -19.09480 -18.86003 -18.59225 -17.91231 -17.06490 -16.89510 -16.81428 -16.19551 -15.94680 -15.73171 -15.69883 -15.58683 -15.06310 -14.65778 -14.45799 -14.22574 -14.10079 -13.97525 -13.83947 -13.79849 -13.40252 -13.16812 -13.04905 -12.89669 -12.69533 -12.58091 -12.40911 -12.37685 -12.17413 -11.93878 -11.32948 -11.21342 -10.91724 -10.72339 -10.15920 -9.76774 -9.68086 -9.08063 -8.51022 -6.24056 -0.39266 0.00842 0.45472 0.68349 1.29325 1.34659 1.44398 1.50446 1.64065 2.27282 2.53332 2.74759 2.96781 3.08227 3.14716 3.27807 3.44965 3.66574 3.87873 4.01062 4.05498 4.08420 4.26472 4.30151 4.33724 4.38861 4.52478 4.55026 4.58876 4.63076 4.68920 4.69647 4.87949 4.95157 4.98846 5.11106 5.22743 5.37936 5.54762 5.62677 5.70612 5.75237 5.89672 6.08036 6.20770 6.25092 6.67792 6.83175 7.03854 7.57590 8.60955 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014873 B = 0.003035 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.128477 B = 9222.070043 C =10070.146135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.082 3.918 3 N -0.456 5.456 4 C 0.058 3.942 5 C 0.054 3.946 6 N -0.466 5.466 7 C 0.283 3.717 8 N -0.564 5.564 9 C 0.069 3.931 10 C 0.524 3.476 11 O -0.569 6.569 12 C -0.081 4.081 13 C -0.031 4.031 14 C -0.171 4.171 15 C -0.079 4.079 16 C -0.240 4.240 17 C 0.119 3.881 18 O -0.245 6.245 19 C -0.400 4.400 20 H 0.078 0.922 21 C 0.009 3.991 22 N -0.925 5.925 23 Si 0.972 3.028 24 H -0.260 1.260 25 H -0.268 1.268 26 H -0.265 1.265 27 C -0.177 4.177 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.213 0.787 32 H 0.207 0.793 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.142 0.858 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.106 0.894 41 H 0.285 0.715 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.706 7.448 -27.984 30.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.059 4.059 3 N -0.172 5.172 4 C -0.102 4.102 5 C -0.107 4.107 6 N -0.182 5.182 7 C 0.054 3.946 8 N -0.298 5.298 9 C -0.071 4.071 10 C 0.314 3.686 11 O -0.445 6.445 12 C -0.120 4.120 13 C -0.032 4.032 14 C -0.190 4.190 15 C -0.097 4.097 16 C -0.259 4.259 17 C 0.070 3.930 18 O -0.153 6.153 19 C -0.476 4.476 20 H 0.096 0.904 21 C -0.189 4.189 22 N -0.566 5.566 23 Si 0.794 3.206 24 H -0.184 1.184 25 H -0.193 1.193 26 H -0.190 1.190 27 C -0.196 4.196 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.229 0.771 32 H 0.224 0.776 33 H 0.097 0.903 34 H 0.133 0.867 35 H 0.104 0.896 36 H 0.159 0.841 37 H 0.165 0.835 38 H 0.163 0.837 39 H 0.156 0.844 40 H 0.124 0.876 41 H 0.094 0.906 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.580 7.782 -27.302 30.297 hybrid contribution -0.142 0.188 1.026 1.053 sum 10.437 7.970 -26.276 29.375 Atomic orbital electron populations 1.20750 0.86315 1.05263 1.03443 1.22665 0.99647 0.88280 0.95349 1.68365 1.10423 1.28421 1.10000 1.24478 0.90058 1.01628 0.94003 1.24293 1.03462 0.87103 0.95820 1.68062 1.08991 1.32422 1.08759 1.19075 0.88480 0.87608 0.99398 1.45305 1.54943 1.20404 1.09169 1.22348 1.02336 1.00053 0.82351 1.21341 0.78764 0.86504 0.81991 1.90780 1.52839 1.67688 1.33178 1.20760 1.03961 0.93130 0.94134 1.19198 0.92848 0.95755 0.95377 1.21007 1.00248 1.01972 0.95731 1.21097 0.95905 0.98329 0.94381 1.21328 0.98070 1.04981 1.01541 1.19590 0.86959 0.94172 0.92278 1.83498 1.37951 1.71348 1.22511 1.20709 1.12462 1.31589 0.82880 0.90401 1.25306 1.00465 0.98711 0.94455 1.69735 1.35127 1.46486 1.05268 0.85202 0.78212 0.78815 0.78405 1.18417 1.19258 1.18972 1.20288 1.01632 1.05562 0.92092 0.91283 0.88540 0.88509 0.77071 0.77625 0.90279 0.86731 0.89610 0.84067 0.83532 0.83714 0.84356 0.87566 0.90562 0.85497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 10.03 71.24 0.71 -1.10 16 2 C 0.08 1.88 6.81 42.76 0.29 2.18 16 3 N -0.46 -9.98 10.42 -182.81 -1.90 -11.89 16 4 C 0.06 0.92 11.21 84.64 0.95 1.86 16 5 C 0.05 0.91 11.22 84.65 0.95 1.86 16 6 N -0.47 -11.28 10.53 -192.42 -2.03 -13.30 16 7 C 0.28 6.79 5.42 132.87 0.72 7.51 16 8 N -0.56 -11.31 2.10 -660.33 -1.39 -12.69 16 9 C 0.07 0.59 9.29 127.77 1.19 1.77 16 10 C 0.52 13.83 7.63 87.66 0.67 14.50 16 11 O -0.57 -22.27 16.00 -3.01 -0.05 -22.32 16 12 C -0.08 -1.60 4.45 29.10 0.13 -1.47 16 13 C -0.03 -0.99 4.37 -19.88 -0.09 -1.08 16 14 C -0.17 -5.49 9.70 22.30 0.22 -5.27 16 15 C -0.08 -2.95 10.04 22.25 0.22 -2.73 16 16 C -0.24 -11.29 9.17 22.39 0.21 -11.08 16 17 C 0.12 5.88 6.65 22.58 0.15 6.03 16 18 O -0.25 -13.92 8.59 -22.70 -0.19 -14.12 16 19 C -0.40 -24.58 9.95 67.92 0.68 -23.90 16 20 H 0.08 5.03 5.44 -2.91 -0.02 5.02 16 21 C 0.01 0.52 5.49 84.83 0.47 0.98 16 22 N -0.93 -56.95 13.96 21.61 0.30 -56.64 16 23 Si 0.97 46.75 28.62 68.60 1.96 48.71 16 24 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 27 C -0.18 -7.07 9.65 22.39 0.22 -6.86 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.10 1.32 6.59 -2.38 -0.02 1.31 16 31 H 0.21 1.42 8.06 -2.92 -0.02 1.40 16 32 H 0.21 1.75 8.06 -2.91 -0.02 1.72 16 33 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.11 0.32 6.66 -2.38 -0.02 0.31 16 35 H 0.09 0.55 8.01 -2.39 -0.02 0.54 16 36 H 0.14 1.81 7.35 -2.39 -0.02 1.79 16 37 H 0.15 1.73 8.05 -2.39 -0.02 1.71 16 38 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 39 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 40 H 0.11 5.46 5.64 -2.91 -0.02 5.44 16 41 H 0.28 16.02 8.31 -92.71 -0.77 15.25 16 42 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -88.75 363.36 5.43 -83.31 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 1.05 Total: 15.74 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: 7.68 Total: -16.80 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -5.02 Total: -94.53 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -0.24 Total: -36.43 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.96 Total: 48.71 kcal Total: -88.75 5.43 -83.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893286625.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.910 kcal (2) G-P(sol) polarization free energy of solvation -88.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds