Wall clock time and date at job start Tue Mar 31 2020 15:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31983 * 120.04317 * 2 1 4 4 C 1.32219 * 120.07501 * 180.27901 * 3 2 1 5 5 C 1.38270 * 120.16302 * 359.68781 * 4 3 2 6 6 N 1.32175 * 120.08931 * 0.04744 * 5 4 3 7 7 C 1.32632 * 119.92677 * 359.97438 * 6 5 4 8 8 N 1.39412 * 120.08143 * 179.97438 * 7 6 5 9 9 C 1.46500 * 120.00101 * 95.25020 * 8 7 6 10 10 C 1.34783 * 119.99559 * 275.25475 * 8 7 6 11 11 O 1.21272 * 119.99918 * 359.97438 * 10 8 7 12 12 C 1.50702 * 119.99651 * 179.72300 * 10 8 7 13 13 C 1.50703 * 109.46920 * 180.27197 * 12 10 8 14 14 C 1.38302 * 119.93037 * 269.72722 * 13 12 10 15 15 C 1.38102 * 120.06850 * 179.72618 * 14 13 12 16 16 C 1.38884 * 119.92600 * 0.56832 * 15 14 13 17 17 O 1.35749 * 120.06625 * 179.67899 * 16 15 14 18 18 C 1.34828 * 116.99931 * 174.47911 * 17 16 15 19 19 H 1.08000 * 119.99917 * 5.06013 * 18 17 16 20 20 C 1.38648 * 120.00132 * 185.06250 * 18 17 16 21 21 N 1.31565 * 120.00125 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00215 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47143 * 90.00031 * 22 20 18 24 24 H 1.48498 * 109.47078 * 209.99730 * 22 20 18 25 25 H 1.48500 * 109.47122 * 329.99928 * 22 20 18 26 26 C 1.38878 * 119.86422 * 359.70720 * 16 15 14 27 27 C 1.38103 * 119.93014 * 359.97438 * 26 16 15 28 28 H 1.09003 * 109.46770 * 275.19743 * 1 2 3 29 29 H 1.08994 * 109.47623 * 35.19605 * 1 2 3 30 30 H 1.09001 * 109.47258 * 155.20331 * 1 2 3 31 31 H 1.08002 * 119.92111 * 179.71224 * 4 3 2 32 32 H 1.08003 * 119.94784 * 180.02562 * 5 4 3 33 33 H 1.09002 * 109.46697 * 264.84728 * 9 8 7 34 34 H 1.08990 * 109.47226 * 24.84799 * 9 8 7 35 35 H 1.09000 * 109.46610 * 144.85068 * 9 8 7 36 36 H 1.08996 * 109.46910 * 300.27421 * 12 10 8 37 37 H 1.09006 * 109.46646 * 60.27541 * 12 10 8 38 38 H 1.08001 * 119.96657 * 359.97438 * 14 13 12 39 39 H 1.07998 * 120.03298 * 180.27205 * 15 14 13 40 40 H 0.96994 * 120.00397 * 180.02562 * 21 20 18 41 41 H 1.07992 * 120.03733 * 179.97438 * 26 16 15 42 42 H 1.07994 * 119.96420 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1425 0.0000 4 6 3.4900 1.1433 -0.0056 5 6 4.1854 -0.0518 -0.0049 6 7 3.5302 -1.1998 0.0004 7 6 2.2039 -1.2047 0.0055 8 7 1.5096 -2.4136 0.0106 9 6 1.0491 -2.9885 1.2769 10 6 1.2622 -3.0534 -1.1497 11 8 1.6432 -2.5772 -2.1979 12 6 0.5172 -4.3633 -1.1437 13 6 0.3790 -4.8690 -2.5566 14 6 -0.7247 -4.5155 -3.3113 15 6 -0.8513 -4.9727 -4.6083 16 6 0.1253 -5.7980 -5.1505 17 8 0.0004 -6.2543 -6.4228 18 6 1.0362 -6.9556 -6.9260 19 1 1.8784 -7.2017 -6.2963 20 6 1.0202 -7.3608 -8.2519 21 7 -0.0060 -7.0614 -9.0189 22 14 2.4556 -8.3317 -8.9493 23 1 2.2087 -9.7839 -8.7613 24 1 2.5954 -8.0369 -10.3980 25 1 3.7037 -7.9463 -8.2429 26 6 1.2296 -6.1558 -4.3881 27 6 1.3537 -5.6900 -3.0940 28 1 -0.3633 0.0931 1.0235 29 1 -0.3634 0.8397 -0.5923 30 1 -0.3634 -0.9329 -0.4310 31 1 4.0281 2.0796 -0.0103 32 1 5.2654 -0.0472 -0.0090 33 1 1.7827 -3.7101 1.6364 34 1 0.9288 -2.1947 2.0139 35 1 0.0930 -3.4888 1.1222 36 1 1.0682 -5.0919 -0.5491 37 1 -0.4729 -4.2161 -0.7120 38 1 -1.4863 -3.8779 -2.8873 39 1 -1.7113 -4.6927 -5.1985 40 1 -0.0174 -7.3452 -9.9464 41 1 1.9904 -6.7977 -4.8068 42 1 2.2124 -5.9676 -2.5008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893288208.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:13 Heat of formation + Delta-G solvation = 1.337765 kcal Electronic energy + Delta-G solvation = -26584.539670 eV Core-core repulsion = 22723.222954 eV Total energy + Delta-G solvation = -3861.316716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.51464 -41.06863 -40.40394 -38.28922 -36.94187 -35.59393 -34.42797 -33.46547 -32.37582 -31.78390 -29.28746 -28.37154 -27.74218 -27.14831 -25.22590 -23.94564 -23.64748 -22.54675 -20.84706 -19.84838 -19.08480 -18.84322 -18.59465 -17.88135 -17.06940 -16.68770 -16.43580 -16.09503 -15.97841 -15.89304 -15.52440 -15.47824 -15.05822 -14.63717 -14.40939 -14.22976 -14.01175 -13.82092 -13.80945 -13.60826 -13.37968 -13.23698 -12.97980 -12.84690 -12.69039 -12.49842 -12.32352 -12.26807 -12.15468 -12.11857 -11.19586 -11.15880 -10.80006 -10.67337 -10.13088 -9.77169 -9.74321 -8.91674 -8.48764 -6.16940 -0.37524 0.01988 0.61036 0.64526 1.32471 1.41556 1.48117 1.50490 1.69885 2.16413 2.54518 2.80386 3.09358 3.12702 3.30397 3.45780 3.51565 3.75599 3.94573 4.03320 4.06211 4.09573 4.18525 4.31796 4.34361 4.43859 4.57680 4.62437 4.63407 4.67620 4.71272 4.80215 4.90906 5.00341 5.07638 5.13318 5.13540 5.29258 5.53597 5.59092 5.70915 5.76147 6.01754 6.10806 6.22311 6.25975 6.69134 6.95854 7.09227 7.77012 8.74738 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019277 B = 0.002508 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.178070 B =11162.974152 C =11608.424943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.084 3.916 3 N -0.455 5.455 4 C 0.058 3.942 5 C 0.051 3.949 6 N -0.470 5.470 7 C 0.282 3.718 8 N -0.566 5.566 9 C 0.072 3.928 10 C 0.520 3.480 11 O -0.570 6.570 12 C -0.069 4.069 13 C -0.149 4.149 14 C -0.054 4.054 15 C -0.206 4.206 16 C 0.113 3.887 17 O -0.233 6.233 18 C -0.415 4.415 19 H 0.099 0.901 20 C -0.023 4.023 21 N -0.921 5.921 22 Si 1.019 2.981 23 H -0.259 1.259 24 H -0.270 1.270 25 H -0.257 1.257 26 C -0.246 4.246 27 C -0.061 4.061 28 H 0.110 0.890 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.212 0.788 32 H 0.204 0.796 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.132 0.868 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.114 0.886 40 H 0.273 0.727 41 H 0.115 0.885 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.711 12.246 27.748 30.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.058 4.058 3 N -0.171 5.171 4 C -0.102 4.102 5 C -0.109 4.109 6 N -0.187 5.187 7 C 0.053 3.947 8 N -0.300 5.300 9 C -0.068 4.068 10 C 0.310 3.690 11 O -0.446 6.446 12 C -0.108 4.108 13 C -0.150 4.150 14 C -0.071 4.071 15 C -0.225 4.225 16 C 0.063 3.937 17 O -0.140 6.140 18 C -0.491 4.491 19 H 0.116 0.884 20 C -0.221 4.221 21 N -0.559 5.559 22 Si 0.838 3.162 23 H -0.184 1.184 24 H -0.194 1.194 25 H -0.180 1.180 26 C -0.265 4.265 27 C -0.079 4.079 28 H 0.128 0.872 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.229 0.771 32 H 0.220 0.780 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.135 0.865 36 H 0.149 0.851 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.132 0.868 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.634 12.445 26.839 29.806 hybrid contribution 0.889 -0.428 -1.088 1.469 sum 4.523 12.016 25.750 28.774 Atomic orbital electron populations 1.20727 0.85868 1.03926 1.04894 1.22721 0.99880 0.88084 0.95142 1.68378 1.10260 1.28403 1.10058 1.24452 0.90171 1.01468 0.94071 1.24258 1.03395 0.87211 0.96076 1.68053 1.09327 1.32515 1.08817 1.19137 0.88371 0.87824 0.99322 1.45387 1.54880 1.20371 1.09321 1.22304 1.02167 1.00005 0.82324 1.21606 0.78802 0.86665 0.81893 1.90771 1.52697 1.68066 1.33065 1.20595 1.03727 0.92120 0.94313 1.19238 0.96203 1.02469 0.97054 1.20907 0.97829 0.96838 0.91563 1.20467 1.00435 1.03721 0.97920 1.19955 0.95117 0.93188 0.85454 1.83934 1.41801 1.63919 1.24296 1.21807 0.98596 1.32653 0.96025 0.88400 1.26600 1.01692 0.98852 0.94908 1.70184 1.31949 1.46076 1.07736 0.84591 0.76016 0.77941 0.77669 1.18357 1.19446 1.18040 1.21211 1.00331 1.08108 0.96842 1.20921 0.97920 0.95596 0.93427 0.87204 0.90203 0.90505 0.77115 0.77960 0.90929 0.89629 0.86526 0.85053 0.83666 0.82986 0.86829 0.91791 0.86693 0.84819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.51 10.03 71.24 0.71 -0.79 16 2 C 0.08 1.81 6.81 42.76 0.29 2.10 16 3 N -0.45 -9.56 10.42 -182.80 -1.90 -11.47 16 4 C 0.06 0.91 11.21 84.64 0.95 1.86 16 5 C 0.05 0.90 11.22 84.65 0.95 1.85 16 6 N -0.47 -11.76 10.53 -192.42 -2.03 -13.79 16 7 C 0.28 6.71 5.42 132.86 0.72 7.43 16 8 N -0.57 -11.22 1.96 -660.34 -1.30 -12.52 16 9 C 0.07 0.61 10.13 127.77 1.29 1.90 16 10 C 0.52 13.56 7.29 87.66 0.64 14.20 16 11 O -0.57 -22.18 16.00 -3.00 -0.05 -22.23 16 12 C -0.07 -1.33 4.45 29.10 0.13 -1.20 16 13 C -0.15 -4.72 4.38 -19.83 -0.09 -4.81 16 14 C -0.05 -1.85 9.69 22.25 0.22 -1.63 16 15 C -0.21 -9.26 9.99 22.39 0.22 -9.04 16 16 C 0.11 5.98 6.65 22.58 0.15 6.13 16 17 O -0.23 -14.70 9.76 -22.72 -0.22 -14.92 16 18 C -0.41 -25.32 9.49 67.92 0.64 -24.68 16 19 H 0.10 5.55 5.20 -2.91 -0.02 5.53 16 20 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 21 N -0.92 -58.34 13.67 21.61 0.30 -58.04 16 22 Si 1.02 44.60 29.55 68.60 2.03 46.62 16 23 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 24 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 25 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 26 C -0.25 -11.52 9.17 22.39 0.21 -11.32 16 27 C -0.06 -2.25 9.69 22.25 0.22 -2.03 16 28 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.22 7.03 -2.39 -0.02 1.20 16 31 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.20 1.96 8.06 -2.91 -0.02 1.93 16 33 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.08 0.52 8.01 -2.39 -0.02 0.50 16 35 H 0.12 0.25 6.66 -2.39 -0.02 0.24 16 36 H 0.13 1.79 8.05 -2.39 -0.02 1.77 16 37 H 0.15 1.53 7.36 -2.38 -0.02 1.51 16 38 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 39 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16 40 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 41 H 0.12 5.50 5.64 -2.91 -0.02 5.49 16 42 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -92.89 365.30 5.60 -87.29 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 1.05 Total: 19.99 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: 7.72 Total: -20.93 kcal Atomic # 7 Polarization: -90.88 SS G_CDS: -4.93 Total: -95.82 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -0.27 Total: -37.15 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -92.89 5.60 -87.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893288208.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.624 kcal (2) G-P(sol) polarization free energy of solvation -92.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds