Wall clock time and date at job start Tue Mar 31 2020 14:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38227 * 120.41314 * 2 1 4 4 C 1.39375 * 118.35269 * 179.97438 * 3 2 1 5 5 O 1.35521 * 120.51239 * 180.02562 * 4 3 2 6 6 N 1.32828 * 118.97703 * 0.02562 * 4 3 2 7 7 C 1.31759 * 120.71570 * 359.97438 * 6 4 3 8 8 C 1.50700 * 119.09190 * 179.97438 * 7 6 4 9 9 N 1.46498 * 109.47111 * 90.00123 * 8 7 6 10 10 C 1.34783 * 120.00380 * 180.02562 * 9 8 7 11 11 O 1.21277 * 119.99456 * 359.97438 * 10 9 8 12 12 C 1.50693 * 119.99880 * 179.97438 * 10 9 8 13 13 C 1.50706 * 109.46906 * 179.97438 * 12 10 9 14 14 C 1.37632 * 120.12924 * 265.00072 * 13 12 10 15 15 C 1.38614 * 120.25049 * 179.97438 * 14 13 12 16 16 C 1.38650 * 120.50064 * 0.02562 * 15 14 13 17 17 C 1.37601 * 120.24925 * 0.02562 * 16 15 14 18 18 C 1.40700 * 120.12470 * 84.72349 * 13 12 10 19 19 C 1.41397 * 120.24713 * 359.97438 * 18 13 12 20 20 H 1.07998 * 119.99588 * 329.70087 * 19 18 13 21 21 C 1.39948 * 120.00082 * 149.70100 * 19 18 13 22 22 N 1.30818 * 119.99680 * 162.01372 * 21 19 18 23 23 Si 1.86798 * 119.99768 * 342.01702 * 21 19 18 24 24 H 1.48494 * 109.47190 * 95.40206 * 23 21 19 25 25 H 1.48504 * 109.46678 * 215.40175 * 23 21 19 26 26 H 1.48496 * 109.47290 * 335.39809 * 23 21 19 27 27 N 1.31787 * 121.81738 * 0.27673 * 7 6 4 28 28 H 1.09001 * 109.47362 * 89.99825 * 1 2 3 29 29 H 1.09004 * 109.46883 * 209.99744 * 1 2 3 30 30 H 1.09002 * 109.46972 * 329.99395 * 1 2 3 31 31 H 1.08001 * 120.82670 * 0.02562 * 3 2 1 32 32 H 0.96690 * 114.00372 * 269.97949 * 5 4 3 33 33 H 1.08999 * 109.47369 * 330.00145 * 8 7 6 34 34 H 1.08998 * 109.47071 * 209.99666 * 8 7 6 35 35 H 0.97004 * 120.00114 * 359.97438 * 9 8 7 36 36 H 1.09001 * 109.47727 * 60.00053 * 12 10 9 37 37 H 1.09000 * 109.47533 * 299.99358 * 12 10 9 38 38 H 1.08001 * 119.87731 * 359.97438 * 14 13 12 39 39 H 1.07998 * 119.75054 * 179.97438 * 15 14 13 40 40 H 1.08004 * 119.88166 * 179.97438 * 16 15 14 41 41 H 1.08007 * 120.12858 * 179.97438 * 17 16 15 42 42 H 0.97004 * 119.99666 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2068 1.1921 0.0000 4 6 3.5996 1.1420 0.0005 5 8 4.3293 2.2840 0.0011 6 7 4.2009 -0.0424 0.0005 7 6 3.4956 -1.1553 0.0005 8 6 4.2156 -2.4792 -0.0001 9 7 4.4494 -2.9085 1.3809 10 6 5.0830 -4.0724 1.6267 11 8 5.4592 -4.7645 0.7046 12 6 5.3240 -4.5137 3.0473 13 6 6.0439 -5.8377 3.0468 14 6 5.3322 -7.0111 3.1510 15 6 5.9918 -8.2303 3.1503 16 6 7.3733 -8.2829 3.0453 17 6 8.1053 -7.1224 2.9411 18 6 7.4458 -5.8792 2.9339 19 6 8.1869 -4.6804 2.8198 20 1 7.7469 -3.8168 2.3434 21 6 9.4906 -4.6131 3.3242 22 7 10.2975 -3.6633 2.9264 23 14 10.0785 -5.8794 4.5652 24 1 10.7967 -6.9696 3.8577 25 1 10.9957 -5.2314 5.5369 26 1 8.9103 -6.4437 5.2878 27 7 2.1778 -1.1427 -0.0049 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6872 2.1388 0.0004 32 1 4.5416 2.6155 -0.8820 33 1 5.1708 -2.3731 -0.5142 34 1 3.6071 -3.2234 -0.5138 35 1 4.1488 -2.3548 2.1185 36 1 4.3689 -4.6201 3.5618 37 1 5.9324 -3.7692 3.5609 38 1 4.2558 -6.9819 3.2337 39 1 5.4254 -9.1461 3.2329 40 1 7.8770 -9.2383 3.0461 41 1 9.1814 -7.1657 2.8598 42 1 11.2010 -3.6164 3.2763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898262473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:29 Heat of formation + Delta-G solvation = -10.144602 kcal Electronic energy + Delta-G solvation = -26438.298714 eV Core-core repulsion = 22576.484086 eV Total energy + Delta-G solvation = -3861.814628 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.58235 -39.22571 -38.08381 -37.51027 -35.18023 -33.88169 -33.51095 -32.16557 -31.68951 -30.24704 -29.02503 -28.05140 -26.31160 -24.71074 -23.47740 -22.42318 -21.32872 -20.52145 -19.43986 -19.06690 -18.12464 -17.27873 -16.79640 -16.35064 -15.95655 -15.69207 -15.29650 -14.98213 -14.81716 -14.30557 -14.14986 -13.85504 -13.61785 -13.39385 -13.22526 -12.95690 -12.76056 -12.65549 -12.52193 -12.26231 -12.05493 -11.82016 -11.34017 -11.02532 -10.96561 -10.73358 -10.65958 -10.63942 -10.18452 -9.91156 -9.63658 -9.60411 -9.48817 -9.16014 -9.04961 -8.73479 -7.52172 -7.42550 -6.85659 -4.39527 0.39546 0.62918 2.62586 2.79359 2.92188 3.12650 3.18235 3.27646 3.35757 3.38760 3.50050 3.87112 3.94950 4.05622 4.52444 4.59325 4.59832 4.79926 4.96900 5.09347 5.20783 5.36194 5.45599 5.62057 5.66770 5.76641 5.92501 5.96797 6.06936 6.16302 6.26360 6.36150 6.62467 6.64893 6.70140 6.79918 6.99120 7.03195 7.28653 7.50566 7.73944 7.76295 7.81726 7.90994 7.99645 8.22713 8.44922 8.76678 8.85265 8.90608 10.16531 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015917 B = 0.002964 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.735326 B = 9444.117794 C =10805.830682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.187 3.813 3 C -0.243 4.243 4 C 0.364 3.636 5 O -0.474 6.474 6 N -0.525 5.525 7 C 0.340 3.660 8 C 0.192 3.808 9 N -0.735 5.735 10 C 0.521 3.479 11 O -0.517 6.517 12 C -0.072 4.072 13 C -0.167 4.167 14 C -0.068 4.068 15 C -0.243 4.243 16 C -0.080 4.080 17 C -0.234 4.234 18 C 0.110 3.890 19 C -0.444 4.444 20 H 0.090 0.910 21 C 0.084 3.916 22 N -0.809 5.809 23 Si 0.910 3.090 24 H -0.272 1.272 25 H -0.293 1.293 26 H -0.244 1.244 27 N -0.511 5.511 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.153 0.847 32 H 0.409 0.591 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.396 0.604 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.881 11.438 -4.228 20.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.042 3.958 3 C -0.267 4.267 4 C 0.176 3.824 5 O -0.282 6.282 6 N -0.250 5.250 7 C 0.072 3.928 8 C 0.066 3.934 9 N -0.391 5.391 10 C 0.309 3.691 11 O -0.390 6.390 12 C -0.112 4.112 13 C -0.168 4.168 14 C -0.087 4.087 15 C -0.262 4.262 16 C -0.098 4.098 17 C -0.253 4.253 18 C 0.107 3.893 19 C -0.472 4.472 20 H 0.108 0.892 21 C -0.134 4.134 22 N -0.433 5.433 23 Si 0.736 3.264 24 H -0.198 1.198 25 H -0.221 1.221 26 H -0.167 1.167 27 N -0.228 5.228 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.171 0.829 32 H 0.268 0.732 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.229 0.771 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.116 0.884 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.907 10.278 -4.360 19.434 hybrid contribution 0.093 0.995 0.232 1.026 sum -15.815 11.272 -4.128 19.855 Atomic orbital electron populations 1.20816 0.87223 1.04428 1.03935 1.21726 0.97877 0.87326 0.88872 1.22815 0.94640 1.01404 1.07823 1.19477 0.87141 0.85544 0.90217 1.84738 1.73861 1.35235 1.34362 1.67875 1.43115 0.98551 1.15454 1.23033 0.86117 0.93468 0.90195 1.19863 0.99677 0.87533 0.86310 1.45940 1.62567 1.24022 1.06561 1.21122 0.75847 0.79317 0.92808 1.90698 1.48499 1.53502 1.46348 1.20283 1.00531 0.98239 0.92137 1.19055 0.93586 0.91603 1.12578 1.20431 0.97051 0.92608 0.98584 1.20321 0.94058 0.96051 1.15804 1.20592 0.94124 0.96519 0.98600 1.20995 0.98137 0.92881 1.13276 1.17484 0.91253 0.92583 0.88010 1.19433 0.96555 0.98542 1.32685 0.89235 1.26160 0.95589 0.95655 0.96015 1.69717 1.06677 1.31102 1.35814 0.86346 0.79507 0.80030 0.80470 1.19783 1.22060 1.16673 1.68198 1.09366 1.30245 1.14965 0.89401 0.89442 0.89935 0.82923 0.73162 0.88732 0.88806 0.77061 0.90226 0.88084 0.89067 0.89039 0.89053 0.88355 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.22 36.01 0.37 -0.21 16 2 C 0.19 1.72 6.82 -82.31 -0.56 1.16 16 3 C -0.24 -2.05 9.81 -39.16 -0.38 -2.43 16 4 C 0.36 3.98 7.83 -16.70 -0.13 3.85 16 5 O -0.47 -4.34 13.58 -18.26 -0.25 -4.58 16 6 N -0.52 -7.26 10.36 -10.78 -0.11 -7.37 16 7 C 0.34 4.61 7.01 -157.23 -1.10 3.50 16 8 C 0.19 2.89 6.10 -5.19 -0.03 2.86 16 9 N -0.74 -11.86 5.55 -61.48 -0.34 -12.20 16 10 C 0.52 10.48 7.42 -10.99 -0.08 10.40 16 11 O -0.52 -12.60 16.03 5.56 0.09 -12.51 16 12 C -0.07 -1.41 5.19 -29.03 -0.15 -1.57 16 13 C -0.17 -3.91 4.43 -103.91 -0.46 -4.37 16 14 C -0.07 -1.51 9.66 -39.66 -0.38 -1.89 16 15 C -0.24 -5.34 10.05 -39.29 -0.39 -5.73 16 16 C -0.08 -1.84 10.02 -39.66 -0.40 -2.24 16 17 C -0.23 -5.96 7.17 -38.87 -0.28 -6.23 16 18 C 0.11 2.88 5.10 -106.82 -0.54 2.33 16 19 C -0.44 -12.23 8.56 -37.74 -0.32 -12.55 16 20 H 0.09 2.60 6.99 -52.49 -0.37 2.24 16 21 C 0.08 2.27 5.41 -17.34 -0.09 2.17 16 22 N -0.81 -22.14 13.93 55.55 0.77 -21.37 16 23 Si 0.91 21.33 24.52 -169.99 -4.17 17.17 16 24 H -0.27 -6.27 6.71 56.52 0.38 -5.89 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.24 -5.80 6.85 56.52 0.39 -5.41 16 27 N -0.51 -6.18 10.27 -7.05 -0.07 -6.25 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.27 8.09 -51.93 -0.42 -0.15 16 31 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.41 1.53 9.06 45.56 0.41 1.95 16 33 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 34 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.40 5.53 8.46 -40.82 -0.35 5.19 16 36 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 37 H 0.10 1.99 7.15 -51.93 -0.37 1.62 16 38 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.09 1.84 8.06 -52.48 -0.42 1.41 16 41 H 0.10 2.50 4.74 -52.48 -0.25 2.25 16 42 H 0.28 7.04 8.30 -40.82 -0.34 6.71 16 LS Contribution 361.35 15.07 5.45 5.45 Total: -1.00 -35.03 361.35 -7.89 -42.93 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -4.31 Total: 9.69 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -4.95 Total: -10.95 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.25 Total: -47.19 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.16 Total: -17.09 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.17 Total: 17.17 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.03 -7.89 -42.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898262473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.782 kcal (2) G-P(sol) polarization free energy of solvation -35.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds