Wall clock time and date at job start Tue Mar 31 2020 14:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38227 * 120.41314 * 2 1 4 4 C 1.39375 * 118.35269 * 179.97438 * 3 2 1 5 5 O 1.35521 * 120.51239 * 180.02562 * 4 3 2 6 6 N 1.32828 * 118.97703 * 0.02562 * 4 3 2 7 7 C 1.31759 * 120.71570 * 359.97438 * 6 4 3 8 8 C 1.50700 * 119.09190 * 179.97438 * 7 6 4 9 9 N 1.46498 * 109.47111 * 90.00123 * 8 7 6 10 10 C 1.34783 * 120.00380 * 180.02562 * 9 8 7 11 11 O 1.21277 * 119.99456 * 359.97438 * 10 9 8 12 12 C 1.50693 * 119.99880 * 179.97438 * 10 9 8 13 13 C 1.50706 * 109.46906 * 179.97438 * 12 10 9 14 14 C 1.37632 * 120.12924 * 265.00072 * 13 12 10 15 15 C 1.38614 * 120.25049 * 179.97438 * 14 13 12 16 16 C 1.38650 * 120.50064 * 0.02562 * 15 14 13 17 17 C 1.37601 * 120.24925 * 0.02562 * 16 15 14 18 18 C 1.40700 * 120.12470 * 84.72349 * 13 12 10 19 19 C 1.41397 * 120.24713 * 359.97438 * 18 13 12 20 20 H 1.07998 * 119.99588 * 329.70087 * 19 18 13 21 21 C 1.39948 * 120.00082 * 149.70100 * 19 18 13 22 22 N 1.30818 * 119.99680 * 162.01372 * 21 19 18 23 23 Si 1.86798 * 119.99768 * 342.01702 * 21 19 18 24 24 H 1.48494 * 109.47190 * 95.40206 * 23 21 19 25 25 H 1.48504 * 109.46678 * 215.40175 * 23 21 19 26 26 H 1.48496 * 109.47290 * 335.39809 * 23 21 19 27 27 N 1.31787 * 121.81738 * 0.27673 * 7 6 4 28 28 H 1.09001 * 109.47362 * 89.99825 * 1 2 3 29 29 H 1.09004 * 109.46883 * 209.99744 * 1 2 3 30 30 H 1.09002 * 109.46972 * 329.99395 * 1 2 3 31 31 H 1.08001 * 120.82670 * 0.02562 * 3 2 1 32 32 H 0.96690 * 114.00372 * 269.97949 * 5 4 3 33 33 H 1.08999 * 109.47369 * 330.00145 * 8 7 6 34 34 H 1.08998 * 109.47071 * 209.99666 * 8 7 6 35 35 H 0.97004 * 120.00114 * 359.97438 * 9 8 7 36 36 H 1.09001 * 109.47727 * 60.00053 * 12 10 9 37 37 H 1.09000 * 109.47533 * 299.99358 * 12 10 9 38 38 H 1.08001 * 119.87731 * 359.97438 * 14 13 12 39 39 H 1.07998 * 119.75054 * 179.97438 * 15 14 13 40 40 H 1.08004 * 119.88166 * 179.97438 * 16 15 14 41 41 H 1.08007 * 120.12858 * 179.97438 * 17 16 15 42 42 H 0.97004 * 119.99666 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2068 1.1921 0.0000 4 6 3.5996 1.1420 0.0005 5 8 4.3293 2.2840 0.0011 6 7 4.2009 -0.0424 0.0005 7 6 3.4956 -1.1553 0.0005 8 6 4.2156 -2.4792 -0.0001 9 7 4.4494 -2.9085 1.3809 10 6 5.0830 -4.0724 1.6267 11 8 5.4592 -4.7645 0.7046 12 6 5.3240 -4.5137 3.0473 13 6 6.0439 -5.8377 3.0468 14 6 5.3322 -7.0111 3.1510 15 6 5.9918 -8.2303 3.1503 16 6 7.3733 -8.2829 3.0453 17 6 8.1053 -7.1224 2.9411 18 6 7.4458 -5.8792 2.9339 19 6 8.1869 -4.6804 2.8198 20 1 7.7469 -3.8168 2.3434 21 6 9.4906 -4.6131 3.3242 22 7 10.2975 -3.6633 2.9264 23 14 10.0785 -5.8794 4.5652 24 1 10.7967 -6.9696 3.8577 25 1 10.9957 -5.2314 5.5369 26 1 8.9103 -6.4437 5.2878 27 7 2.1778 -1.1427 -0.0049 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6872 2.1388 0.0004 32 1 4.5416 2.6155 -0.8820 33 1 5.1708 -2.3731 -0.5142 34 1 3.6071 -3.2234 -0.5138 35 1 4.1488 -2.3548 2.1185 36 1 4.3689 -4.6201 3.5618 37 1 5.9324 -3.7692 3.5609 38 1 4.2558 -6.9819 3.2337 39 1 5.4254 -9.1461 3.2329 40 1 7.8770 -9.2383 3.0461 41 1 9.1814 -7.1657 2.8598 42 1 11.2010 -3.6164 3.2763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898262473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:28 Heat of formation + Delta-G solvation = -38.877836 kcal Electronic energy + Delta-G solvation = -26439.544681 eV Core-core repulsion = 22576.484086 eV Total energy + Delta-G solvation = -3863.060595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.42727 -40.83709 -39.34006 -38.77729 -36.30804 -35.47076 -34.95641 -33.60357 -32.88751 -32.14265 -29.87698 -29.19868 -27.81506 -26.54904 -24.31604 -23.38340 -23.13516 -22.16088 -21.07136 -19.91672 -19.23902 -18.92365 -18.13698 -17.70044 -17.34518 -16.75738 -16.60831 -16.39049 -16.05477 -15.64409 -15.59362 -15.38278 -15.02636 -14.58999 -14.54146 -14.18669 -13.95921 -13.78264 -13.71783 -13.61317 -13.42316 -13.12045 -12.92603 -12.68584 -12.66384 -12.48937 -11.97978 -11.77386 -11.51929 -11.46305 -11.36208 -10.99802 -10.95137 -10.54542 -10.42013 -10.18668 -9.37786 -9.27381 -8.84724 -6.43371 -0.43478 -0.13920 0.81383 0.92823 1.27673 1.40815 1.50369 1.75791 2.05141 2.15180 2.16940 2.62899 2.65949 2.76232 3.19013 3.55332 3.76475 3.92223 4.03792 4.13798 4.20114 4.30100 4.37098 4.45203 4.47811 4.58097 4.60639 4.74286 4.75459 4.83462 4.95580 4.96112 4.98954 5.18568 5.30029 5.33130 5.39726 5.69329 5.84656 5.88983 5.97662 6.07717 6.31627 6.45558 6.46075 6.51262 6.82503 6.90370 6.92639 7.30825 8.23488 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015917 B = 0.002964 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.735326 B = 9444.117794 C =10805.830682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.180 3.820 3 C -0.221 4.221 4 C 0.349 3.651 5 O -0.483 6.483 6 N -0.563 5.563 7 C 0.329 3.671 8 C 0.196 3.804 9 N -0.718 5.718 10 C 0.523 3.477 11 O -0.568 6.568 12 C -0.072 4.072 13 C -0.172 4.172 14 C -0.077 4.077 15 C -0.229 4.229 16 C -0.091 4.091 17 C -0.257 4.257 18 C 0.083 3.917 19 C -0.471 4.471 20 H 0.054 0.946 21 C 0.046 3.954 22 N -0.854 5.854 23 Si 0.965 3.035 24 H -0.267 1.267 25 H -0.279 1.279 26 H -0.249 1.249 27 N -0.524 5.524 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.193 0.807 32 H 0.429 0.571 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.408 0.592 36 H 0.124 0.876 37 H 0.094 0.906 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.122 0.878 41 H 0.090 0.910 42 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.140 11.159 -3.276 23.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.036 3.964 3 C -0.244 4.244 4 C 0.163 3.837 5 O -0.294 6.294 6 N -0.290 5.290 7 C 0.060 3.940 8 C 0.070 3.930 9 N -0.372 5.372 10 C 0.311 3.689 11 O -0.446 6.446 12 C -0.111 4.111 13 C -0.174 4.174 14 C -0.095 4.095 15 C -0.248 4.248 16 C -0.109 4.109 17 C -0.276 4.276 18 C 0.081 3.919 19 C -0.501 4.501 20 H 0.073 0.927 21 C -0.168 4.168 22 N -0.481 5.481 23 Si 0.789 3.211 24 H -0.193 1.193 25 H -0.205 1.205 26 H -0.172 1.172 27 N -0.242 5.242 28 H 0.122 0.878 29 H 0.101 0.899 30 H 0.129 0.871 31 H 0.210 0.790 32 H 0.292 0.708 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.243 0.757 36 H 0.142 0.858 37 H 0.112 0.888 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.140 0.860 41 H 0.108 0.892 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.196 10.062 -3.407 21.939 hybrid contribution 0.856 1.096 -0.145 1.398 sum -18.340 11.158 -3.552 21.759 Atomic orbital electron populations 1.20961 0.84152 1.05590 1.05267 1.22449 0.99662 0.86679 0.87624 1.23161 0.93375 1.02818 1.05037 1.19780 0.88393 0.85037 0.90446 1.84700 1.73921 1.34374 1.36367 1.67749 1.44547 0.99740 1.16920 1.22449 0.86734 0.92509 0.92318 1.19731 0.98953 0.89149 0.85164 1.45723 1.60944 1.22813 1.07756 1.21164 0.75433 0.79839 0.92469 1.90669 1.50876 1.55378 1.47656 1.20330 1.02136 0.96483 0.92194 1.19514 0.92993 0.94019 1.10853 1.20908 0.99055 0.92001 0.97559 1.20884 0.93906 0.97615 1.12380 1.20984 0.94968 0.96938 0.97990 1.21144 0.98230 0.93703 1.14505 1.17727 0.92799 0.92368 0.89027 1.19339 0.97662 0.98386 1.34693 0.92735 1.26820 0.95454 0.97292 0.97206 1.69757 1.07444 1.33120 1.37754 0.85492 0.78940 0.78066 0.78573 1.19296 1.20540 1.17225 1.68176 1.08509 1.32005 1.15507 0.87776 0.89907 0.87124 0.79012 0.70778 0.91024 0.88646 0.75655 0.85850 0.88824 0.85380 0.85250 0.86000 0.89168 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 10.22 71.24 0.73 -0.02 16 2 C 0.18 2.89 6.82 42.46 0.29 3.18 16 3 C -0.22 -3.12 9.81 22.54 0.22 -2.89 16 4 C 0.35 7.32 7.83 84.82 0.66 7.98 16 5 O -0.48 -8.31 13.58 -88.24 -1.20 -9.50 16 6 N -0.56 -15.92 10.36 -300.69 -3.12 -19.03 16 7 C 0.33 9.07 7.01 138.76 0.97 10.05 16 8 C 0.20 6.22 6.10 85.63 0.52 6.74 16 9 N -0.72 -23.85 5.55 -466.80 -2.59 -26.44 16 10 C 0.52 21.57 7.42 87.65 0.65 22.22 16 11 O -0.57 -28.80 16.03 -3.02 -0.05 -28.85 16 12 C -0.07 -2.81 5.19 29.10 0.15 -2.66 16 13 C -0.17 -8.00 4.43 -19.40 -0.09 -8.09 16 14 C -0.08 -3.17 9.66 22.22 0.21 -2.96 16 15 C -0.23 -9.21 10.05 22.46 0.23 -8.99 16 16 C -0.09 -3.97 10.02 22.22 0.22 -3.75 16 17 C -0.26 -13.06 7.17 22.73 0.16 -12.89 16 18 C 0.08 4.45 5.10 -21.29 -0.11 4.35 16 19 C -0.47 -27.40 8.56 23.46 0.20 -27.20 16 20 H 0.05 3.43 6.99 -2.91 -0.02 3.41 16 21 C 0.05 2.58 5.41 85.26 0.46 3.04 16 22 N -0.85 -49.20 13.93 21.83 0.30 -48.89 16 23 Si 0.97 45.04 24.52 68.60 1.68 46.72 16 24 H -0.27 -12.09 6.71 99.48 0.67 -11.43 16 25 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.25 -11.65 6.85 99.48 0.68 -10.97 16 27 N -0.52 -12.26 10.27 -176.22 -1.81 -14.07 16 28 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.11 0.22 8.09 -2.39 -0.02 0.20 16 31 H 0.19 1.11 8.06 -2.91 -0.02 1.09 16 32 H 0.43 2.75 9.06 -74.06 -0.67 2.08 16 33 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 35 H 0.41 11.52 8.46 -92.71 -0.78 10.74 16 36 H 0.12 3.64 8.05 -2.39 -0.02 3.62 16 37 H 0.09 3.81 7.15 -2.39 -0.02 3.80 16 38 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 39 H 0.13 4.24 8.06 -2.91 -0.02 4.21 16 40 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 41 H 0.09 4.63 4.74 -2.91 -0.01 4.62 16 42 H 0.29 15.10 8.30 -92.71 -0.77 14.33 16 Total: -1.00 -80.57 361.35 -1.71 -82.28 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: -0.43 Total: 29.69 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 5.49 Total: -11.90 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -7.21 Total: -108.43 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -1.25 Total: -38.35 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.68 Total: 46.72 kcal Total: -80.57 -1.71 -82.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898262473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.404 kcal (2) G-P(sol) polarization free energy of solvation -80.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds