Wall clock time and date at job start Tue Mar 31 2020 15:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38598 * 120.80230 * 2 1 4 4 N 1.32334 * 119.10979 * 179.97438 * 3 2 1 5 5 C 1.31795 * 120.81300 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.12389 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.47301 * 89.99657 * 6 5 4 8 8 C 1.34775 * 119.99904 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00014 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00040 * 179.97438 * 8 7 6 11 11 C 1.50695 * 109.47436 * 179.97438 * 10 8 7 12 12 C 1.38300 * 119.93634 * 269.73208 * 11 10 8 13 13 C 1.38103 * 120.07235 * 179.72038 * 12 11 10 14 14 C 1.38881 * 119.92859 * 0.56979 * 13 12 11 15 15 O 1.35743 * 120.07033 * 179.67702 * 14 13 12 16 16 C 1.34829 * 117.00323 * 174.48588 * 15 14 13 17 17 H 1.08000 * 119.99772 * 5.06302 * 16 15 14 18 18 C 1.38655 * 120.00285 * 185.06067 * 16 15 14 19 19 N 1.31556 * 119.99986 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99817 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47223 * 90.00094 * 20 18 16 22 22 H 1.48499 * 109.47046 * 209.99924 * 20 18 16 23 23 H 1.48492 * 109.47326 * 329.99691 * 20 18 16 24 24 C 1.38884 * 119.86119 * 359.70391 * 14 13 12 25 25 C 1.38100 * 119.93123 * 0.02562 * 24 14 13 26 26 N 1.31797 * 121.75635 * 0.27599 * 5 4 3 27 27 C 1.32332 * 120.81605 * 359.45085 * 26 5 4 28 28 H 1.08992 * 109.47360 * 89.99577 * 1 2 3 29 29 H 1.09004 * 109.47225 * 210.00485 * 1 2 3 30 30 H 1.09004 * 109.46857 * 329.99743 * 1 2 3 31 31 H 1.08008 * 120.44853 * 359.95580 * 3 2 1 32 32 H 1.09007 * 109.46470 * 329.99969 * 6 5 4 33 33 H 1.08996 * 109.47457 * 210.00444 * 6 5 4 34 34 H 0.96999 * 119.99614 * 0.02562 * 7 6 5 35 35 H 1.08999 * 109.47119 * 60.00120 * 10 8 7 36 36 H 1.09004 * 109.47334 * 300.00265 * 10 8 7 37 37 H 1.08004 * 119.96372 * 359.97187 * 12 11 10 38 38 H 1.07998 * 120.03412 * 180.26808 * 13 12 11 39 39 H 0.97002 * 119.99992 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.03050 * 179.97438 * 24 14 13 41 41 H 1.08003 * 119.96708 * 180.02562 * 25 24 14 42 42 H 1.08000 * 120.44750 * 180.29521 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1905 0.0000 4 7 3.5395 1.1514 0.0005 5 6 4.1808 0.0000 0.0015 6 6 5.6879 -0.0001 0.0027 7 7 6.1752 0.0006 1.3842 8 6 7.5001 0.0012 1.6315 9 8 8.2888 0.0016 0.7102 10 6 8.0014 0.0025 3.0526 11 6 9.5083 0.0023 3.0537 12 6 10.1983 -1.1963 3.0610 13 6 11.5794 -1.1998 3.0563 14 6 12.2753 0.0021 3.0561 15 8 13.6328 0.0020 3.0581 16 6 14.2452 1.1975 2.9424 17 1 13.6603 2.1054 2.9360 18 6 15.6258 1.2615 2.8317 19 7 16.3382 0.1556 2.8390 20 14 16.4743 2.9180 2.6721 21 1 16.8072 3.4359 4.0235 22 1 17.7212 2.7614 1.8811 23 1 15.5690 3.8737 1.9850 24 6 11.5796 1.2040 3.0545 25 6 10.1986 1.2008 3.0537 26 7 3.5394 -1.1513 -0.0033 27 6 2.2167 -1.1904 0.0014 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6972 2.1374 -0.0007 32 1 6.0516 0.8898 -0.5113 33 1 6.0516 -0.8902 -0.5105 34 1 5.5443 0.0007 2.1210 35 1 7.6380 -0.8872 3.5669 36 1 7.6374 0.8928 3.5655 37 1 9.6566 -2.1306 3.0663 38 1 12.1175 -2.1361 3.0576 39 1 17.3042 0.2003 2.7620 40 1 12.1180 2.1402 3.0548 41 1 9.6569 2.1352 3.0520 42 1 1.6972 -2.1373 0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910658043.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:32 Heat of formation + Delta-G solvation = 8.446567 kcal Electronic energy + Delta-G solvation = -25278.511744 eV Core-core repulsion = 21417.503290 eV Total energy + Delta-G solvation = -3861.008455 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.65113 -39.70390 -38.70674 -36.50669 -35.47403 -34.23644 -33.76534 -32.40794 -31.39897 -30.06948 -29.36878 -26.88415 -25.63008 -25.19696 -24.82349 -22.48500 -21.88857 -21.08424 -20.07910 -18.29726 -17.91040 -17.81548 -16.87443 -16.63950 -16.09705 -15.39539 -15.23639 -14.97384 -14.51806 -14.47722 -14.20294 -14.10757 -13.76467 -13.66035 -13.50830 -13.35094 -13.12003 -13.06957 -12.97647 -12.61868 -12.35088 -11.76128 -11.42960 -11.39834 -11.34806 -11.20141 -10.78076 -10.69388 -10.54361 -10.36861 -9.98937 -9.70964 -9.56910 -9.24801 -9.17148 -8.75277 -8.06402 -7.08338 -6.37849 -3.96240 0.23905 0.57152 2.32600 2.34128 2.81615 2.93297 3.17631 3.19168 3.23934 3.30069 3.60544 3.64477 4.03224 4.03635 4.19868 4.23745 4.60064 4.69023 4.91195 4.95012 5.03613 5.15892 5.19223 5.25599 5.33383 5.35864 5.40090 5.46965 5.54557 5.73523 5.81605 5.85785 5.93434 6.25402 6.30053 6.44044 6.50402 6.78730 6.99936 7.13344 7.31950 7.43524 7.45580 7.53145 7.57147 7.92424 8.07657 8.33604 9.07992 9.79146 10.80376 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.032797 B = 0.001799 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.528149 B =15559.365357 C =15956.486252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.189 4.189 3 C 0.146 3.854 4 N -0.499 5.499 5 C 0.297 3.703 6 C 0.192 3.808 7 N -0.732 5.732 8 C 0.513 3.487 9 O -0.516 6.516 10 C -0.077 4.077 11 C -0.170 4.170 12 C -0.059 4.059 13 C -0.191 4.191 14 C 0.157 3.843 15 O -0.179 6.179 16 C -0.390 4.390 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.864 5.864 20 Si 0.941 3.059 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.232 4.232 25 C -0.056 4.056 26 N -0.499 5.499 27 C 0.146 3.854 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.170 0.830 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.398 0.602 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.269 0.731 40 H 0.126 0.874 41 H 0.104 0.896 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.966 0.214 -2.799 33.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.194 4.194 3 C -0.020 4.020 4 N -0.212 5.212 5 C 0.029 3.971 6 C 0.067 3.933 7 N -0.388 5.388 8 C 0.300 3.700 9 O -0.389 6.389 10 C -0.117 4.117 11 C -0.171 4.171 12 C -0.078 4.078 13 C -0.211 4.211 14 C 0.103 3.897 15 O -0.082 6.082 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.252 4.252 25 C -0.074 4.074 26 N -0.212 5.212 27 C -0.020 4.020 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.187 0.813 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.231 0.769 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.127 0.873 38 H 0.135 0.865 39 H 0.079 0.921 40 H 0.144 0.856 41 H 0.122 0.878 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -30.901 -0.030 -3.507 31.099 hybrid contribution -1.049 0.892 0.145 1.385 sum -31.950 0.862 -3.362 32.138 Atomic orbital electron populations 1.20683 0.88884 1.03750 1.03113 1.21814 0.99368 0.95690 1.02494 1.23249 0.89408 0.98431 0.90941 1.68305 1.10046 1.30369 1.12487 1.23153 0.97619 0.83637 0.92716 1.19838 0.83392 1.04585 0.85514 1.45925 1.07664 1.78051 1.07121 1.21069 0.80860 0.75469 0.92606 1.90762 1.54733 1.47119 1.46316 1.20389 0.94916 1.03936 0.92484 1.18626 0.91903 0.93746 1.12861 1.20409 0.93106 0.96326 0.97923 1.20154 0.93307 0.96202 1.11405 1.19384 0.84888 0.93288 0.92144 1.83973 1.12860 1.32950 1.78464 1.21330 0.90148 0.83161 1.52029 0.89088 1.25279 0.95425 0.99222 0.96626 1.70044 1.06696 1.26926 1.46234 0.85717 0.78908 0.80249 0.78586 1.19938 1.20296 1.19207 1.21105 0.94076 0.98396 1.11596 1.20516 0.93627 0.96184 0.97119 1.68303 1.10048 1.30368 1.12495 1.23245 0.89407 0.98428 0.90946 0.90372 0.90721 0.90726 0.81279 0.88855 0.88839 0.76912 0.88909 0.88940 0.87340 0.86546 0.92108 0.85595 0.87788 0.81277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.20 10.06 36.00 0.36 0.17 16 2 C -0.19 -0.96 5.91 -104.36 -0.62 -1.58 16 3 C 0.15 0.94 11.01 -17.20 -0.19 0.75 16 4 N -0.50 -4.75 10.34 -10.72 -0.11 -4.86 16 5 C 0.30 2.99 7.01 -157.19 -1.10 1.89 16 6 C 0.19 2.15 6.11 -5.19 -0.03 2.12 16 7 N -0.73 -8.12 5.55 -61.47 -0.34 -8.46 16 8 C 0.51 7.42 7.82 -10.99 -0.09 7.33 16 9 O -0.52 -9.99 16.03 5.56 0.09 -9.90 16 10 C -0.08 -1.01 5.83 -29.04 -0.17 -1.18 16 11 C -0.17 -3.06 4.38 -104.58 -0.46 -3.52 16 12 C -0.06 -1.13 9.69 -39.61 -0.38 -1.52 16 13 C -0.19 -4.30 9.99 -39.39 -0.39 -4.69 16 14 C 0.16 3.99 6.65 -39.10 -0.26 3.73 16 15 O -0.18 -5.31 9.76 0.07 0.00 -5.31 16 16 C -0.39 -11.30 9.49 30.89 0.29 -11.01 16 17 H 0.09 2.45 5.20 -52.49 -0.27 2.17 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -26.00 13.67 55.48 0.76 -25.24 16 20 Si 0.94 21.16 29.55 -169.99 -5.02 16.14 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 C -0.23 -5.36 9.17 -39.39 -0.36 -5.72 16 25 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 26 N -0.50 -4.74 10.33 -10.72 -0.11 -4.85 16 27 C 0.15 0.93 11.01 -17.20 -0.19 0.74 16 28 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.07 0.07 8.10 -51.93 -0.42 -0.35 16 30 H 0.07 0.08 8.10 -51.93 -0.42 -0.35 16 31 H 0.17 0.58 8.06 -52.48 -0.42 0.16 16 32 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.40 3.46 8.46 -40.82 -0.35 3.12 16 35 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.09 0.99 8.08 -51.93 -0.42 0.57 16 37 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 38 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.13 2.89 5.64 -52.49 -0.30 2.59 16 41 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 42 H 0.17 0.58 8.06 -52.49 -0.42 0.15 16 LS Contribution 370.57 15.07 5.58 5.58 Total: -1.00 -36.75 370.57 -8.33 -45.08 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.11 Total: 4.79 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -4.07 Total: -12.96 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.20 Total: -43.42 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.09 Total: -15.22 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.75 -8.33 -45.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910658043.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.524 kcal (2) G-P(sol) polarization free energy of solvation -36.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds