Wall clock time and date at job start Tue Mar 31 2020 15:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38598 * 120.80230 * 2 1 4 4 N 1.32334 * 119.10979 * 179.97438 * 3 2 1 5 5 C 1.31795 * 120.81300 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.12389 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.47301 * 89.99657 * 6 5 4 8 8 C 1.34775 * 119.99904 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00014 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00040 * 179.97438 * 8 7 6 11 11 C 1.50695 * 109.47436 * 179.97438 * 10 8 7 12 12 C 1.38300 * 119.93634 * 269.73208 * 11 10 8 13 13 C 1.38103 * 120.07235 * 179.72038 * 12 11 10 14 14 C 1.38881 * 119.92859 * 0.56979 * 13 12 11 15 15 O 1.35743 * 120.07033 * 179.67702 * 14 13 12 16 16 C 1.34829 * 117.00323 * 174.48588 * 15 14 13 17 17 H 1.08000 * 119.99772 * 5.06302 * 16 15 14 18 18 C 1.38655 * 120.00285 * 185.06067 * 16 15 14 19 19 N 1.31556 * 119.99986 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99817 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47223 * 90.00094 * 20 18 16 22 22 H 1.48499 * 109.47046 * 209.99924 * 20 18 16 23 23 H 1.48492 * 109.47326 * 329.99691 * 20 18 16 24 24 C 1.38884 * 119.86119 * 359.70391 * 14 13 12 25 25 C 1.38100 * 119.93123 * 0.02562 * 24 14 13 26 26 N 1.31797 * 121.75635 * 0.27599 * 5 4 3 27 27 C 1.32332 * 120.81605 * 359.45085 * 26 5 4 28 28 H 1.08992 * 109.47360 * 89.99577 * 1 2 3 29 29 H 1.09004 * 109.47225 * 210.00485 * 1 2 3 30 30 H 1.09004 * 109.46857 * 329.99743 * 1 2 3 31 31 H 1.08008 * 120.44853 * 359.95580 * 3 2 1 32 32 H 1.09007 * 109.46470 * 329.99969 * 6 5 4 33 33 H 1.08996 * 109.47457 * 210.00444 * 6 5 4 34 34 H 0.96999 * 119.99614 * 0.02562 * 7 6 5 35 35 H 1.08999 * 109.47119 * 60.00120 * 10 8 7 36 36 H 1.09004 * 109.47334 * 300.00265 * 10 8 7 37 37 H 1.08004 * 119.96372 * 359.97187 * 12 11 10 38 38 H 1.07998 * 120.03412 * 180.26808 * 13 12 11 39 39 H 0.97002 * 119.99992 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.03050 * 179.97438 * 24 14 13 41 41 H 1.08003 * 119.96708 * 180.02562 * 25 24 14 42 42 H 1.08000 * 120.44750 * 180.29521 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1905 0.0000 4 7 3.5395 1.1514 0.0005 5 6 4.1808 0.0000 0.0015 6 6 5.6879 -0.0001 0.0027 7 7 6.1752 0.0006 1.3842 8 6 7.5001 0.0012 1.6315 9 8 8.2888 0.0016 0.7102 10 6 8.0014 0.0025 3.0526 11 6 9.5083 0.0023 3.0537 12 6 10.1983 -1.1963 3.0610 13 6 11.5794 -1.1998 3.0563 14 6 12.2753 0.0021 3.0561 15 8 13.6328 0.0020 3.0581 16 6 14.2452 1.1975 2.9424 17 1 13.6603 2.1054 2.9360 18 6 15.6258 1.2615 2.8317 19 7 16.3382 0.1556 2.8390 20 14 16.4743 2.9180 2.6721 21 1 16.8072 3.4359 4.0235 22 1 17.7212 2.7614 1.8811 23 1 15.5690 3.8737 1.9850 24 6 11.5796 1.2040 3.0545 25 6 10.1986 1.2008 3.0537 26 7 3.5394 -1.1513 -0.0033 27 6 2.2167 -1.1904 0.0014 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6972 2.1374 -0.0007 32 1 6.0516 0.8898 -0.5113 33 1 6.0516 -0.8902 -0.5105 34 1 5.5443 0.0007 2.1210 35 1 7.6380 -0.8872 3.5669 36 1 7.6374 0.8928 3.5655 37 1 9.6566 -2.1306 3.0663 38 1 12.1175 -2.1361 3.0576 39 1 17.3042 0.2003 2.7620 40 1 12.1180 2.1402 3.0548 41 1 9.6569 2.1352 3.0520 42 1 1.6972 -2.1373 0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000910658043.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:31 Heat of formation + Delta-G solvation = -17.983844 kcal Electronic energy + Delta-G solvation = -25279.657853 eV Core-core repulsion = 21417.503290 eV Total energy + Delta-G solvation = -3862.154563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.21335 -41.05751 -40.34348 -38.23483 -36.34814 -34.79816 -34.46571 -34.36924 -32.88083 -31.76562 -30.17106 -28.17663 -27.13742 -26.03368 -25.69512 -23.62311 -23.11210 -22.50012 -21.37373 -19.83681 -18.91823 -18.85549 -18.53239 -17.63690 -16.89951 -16.67460 -16.36711 -16.06130 -15.98480 -15.57764 -15.50457 -15.36671 -15.04594 -14.70727 -14.63799 -14.41451 -14.21755 -14.06416 -13.86083 -13.67755 -13.56647 -13.15371 -12.96060 -12.75117 -12.46939 -12.29278 -12.23441 -12.12148 -11.94732 -11.91042 -11.16771 -11.04267 -10.76582 -10.26891 -10.21224 -10.19693 -9.74927 -8.89283 -8.46632 -6.14811 -0.29831 0.07858 0.62954 0.68179 1.34136 1.43861 1.52313 1.69585 2.08318 2.18355 2.66782 2.80486 2.92164 3.13800 3.19054 3.53521 3.64395 3.84246 3.87894 3.90751 4.05972 4.06840 4.20136 4.26375 4.36236 4.50329 4.59778 4.63145 4.71211 4.74679 4.81824 4.84298 5.06347 5.09857 5.14793 5.15653 5.28917 5.32203 5.44380 5.57671 5.72746 5.79168 5.92839 6.03691 6.23677 6.50630 6.97852 7.00141 7.27140 7.79295 8.76826 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.032797 B = 0.001799 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.528149 B =15559.365357 C =15956.486252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.171 4.171 3 C 0.134 3.866 4 N -0.522 5.522 5 C 0.279 3.721 6 C 0.196 3.804 7 N -0.712 5.712 8 C 0.516 3.484 9 O -0.575 6.575 10 C -0.074 4.074 11 C -0.146 4.146 12 C -0.057 4.057 13 C -0.206 4.206 14 C 0.112 3.888 15 O -0.234 6.234 16 C -0.415 4.415 17 H 0.100 0.900 18 C -0.024 4.024 19 N -0.921 5.921 20 Si 1.020 2.980 21 H -0.260 1.260 22 H -0.270 1.270 23 H -0.256 1.256 24 C -0.244 4.244 25 C -0.060 4.060 26 N -0.521 5.521 27 C 0.134 3.866 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.197 0.803 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.413 0.587 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.147 0.853 38 H 0.112 0.888 39 H 0.273 0.727 40 H 0.118 0.882 41 H 0.139 0.861 42 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.894 1.277 -2.234 37.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.175 4.175 3 C -0.032 4.032 4 N -0.236 5.236 5 C 0.011 3.989 6 C 0.070 3.930 7 N -0.366 5.366 8 C 0.304 3.696 9 O -0.453 6.453 10 C -0.114 4.114 11 C -0.147 4.147 12 C -0.075 4.075 13 C -0.226 4.226 14 C 0.062 3.938 15 O -0.141 6.141 16 C -0.491 4.491 17 H 0.117 0.883 18 C -0.221 4.221 19 N -0.559 5.559 20 Si 0.839 3.161 21 H -0.185 1.185 22 H -0.195 1.195 23 H -0.179 1.179 24 C -0.264 4.264 25 C -0.078 4.078 26 N -0.235 5.235 27 C -0.031 4.031 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.214 0.786 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.249 0.751 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.165 0.835 38 H 0.131 0.869 39 H 0.082 0.918 40 H 0.135 0.865 41 H 0.156 0.844 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -35.955 1.027 -2.912 36.087 hybrid contribution -0.047 0.456 -0.051 0.462 sum -36.002 1.484 -2.963 36.154 Atomic orbital electron populations 1.20789 0.86195 1.05116 1.04100 1.22160 1.01056 0.94624 0.99643 1.23806 0.88560 1.00269 0.90532 1.68246 1.11754 1.30261 1.13303 1.22725 0.96837 0.84313 0.94986 1.19672 0.84879 1.03337 0.85104 1.45701 1.06936 1.76140 1.07833 1.21212 0.81348 0.74585 0.92446 1.90766 1.56290 1.50214 1.47994 1.20508 0.90854 1.07744 0.92257 1.19235 0.95059 0.92536 1.07897 1.20888 0.91700 0.98720 0.96200 1.20443 0.95058 0.95273 1.11781 1.19941 0.84107 0.95390 0.94368 1.83933 1.15018 1.33550 1.81556 1.21830 0.91024 0.83636 1.52620 0.88271 1.26614 0.95772 1.03860 0.95871 1.70191 1.07111 1.29819 1.48822 0.84573 0.77579 0.74689 0.79250 1.18456 1.19501 1.17935 1.21231 0.95811 0.97238 1.12080 1.20943 0.92264 0.98589 0.95977 1.68245 1.11753 1.30241 1.13296 1.23805 0.88557 1.00264 0.90517 0.89332 0.89380 0.89400 0.78583 0.90162 0.90082 0.75125 0.85022 0.85263 0.83495 0.86940 0.91850 0.86460 0.84363 0.78558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.04 10.06 71.23 0.72 0.76 16 2 C -0.17 -1.19 5.91 -19.69 -0.12 -1.31 16 3 C 0.13 1.37 11.01 84.70 0.93 2.30 16 4 N -0.52 -9.13 10.34 -187.83 -1.94 -11.08 16 5 C 0.28 5.32 7.01 138.75 0.97 6.30 16 6 C 0.20 4.29 6.11 85.64 0.52 4.81 16 7 N -0.71 -14.15 5.55 -466.79 -2.59 -16.74 16 8 C 0.52 13.56 7.82 87.66 0.69 14.24 16 9 O -0.57 -21.73 16.03 -3.03 -0.05 -21.78 16 10 C -0.07 -1.59 5.83 29.10 0.17 -1.42 16 11 C -0.15 -4.85 4.38 -19.83 -0.09 -4.94 16 12 C -0.06 -2.08 9.69 22.25 0.22 -1.87 16 13 C -0.21 -9.54 9.99 22.39 0.22 -9.32 16 14 C 0.11 6.01 6.65 22.58 0.15 6.16 16 15 O -0.23 -14.90 9.76 -22.66 -0.22 -15.12 16 16 C -0.41 -25.46 9.49 67.92 0.64 -24.82 16 17 H 0.10 5.62 5.20 -2.91 -0.02 5.61 16 18 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16 19 N -0.92 -58.62 13.67 21.61 0.30 -58.32 16 20 Si 1.02 44.77 29.55 68.60 2.03 46.80 16 21 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 24 C -0.24 -11.55 9.17 22.39 0.21 -11.34 16 25 C -0.06 -2.24 9.69 22.25 0.22 -2.03 16 26 N -0.52 -9.09 10.33 -187.84 -1.94 -11.03 16 27 C 0.13 1.36 11.01 84.70 0.93 2.29 16 28 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.09 -0.21 8.10 -2.39 -0.02 -0.23 16 30 H 0.09 -0.20 8.10 -2.38 -0.02 -0.22 16 31 H 0.20 0.72 8.06 -2.91 -0.02 0.69 16 32 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.41 5.82 8.46 -92.71 -0.78 5.04 16 35 H 0.13 1.93 8.08 -2.39 -0.02 1.91 16 36 H 0.13 1.96 8.08 -2.38 -0.02 1.94 16 37 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 38 H 0.11 5.13 8.06 -2.91 -0.02 5.10 16 39 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 40 H 0.12 5.61 5.64 -2.91 -0.02 5.59 16 41 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 42 H 0.20 0.70 8.06 -2.91 -0.02 0.67 16 Total: -1.00 -88.35 370.57 2.71 -85.64 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.28 Total: 22.75 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: 6.85 Total: -21.12 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -6.18 Total: -97.17 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.27 Total: -36.90 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -88.35 2.71 -85.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910658043.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.657 kcal (2) G-P(sol) polarization free energy of solvation -88.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds