Wall clock time and date at job start Tue Mar 31 2020 15:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38597 * 120.80103 * 2 1 4 4 N 1.32331 * 119.10934 * 179.97438 * 3 2 1 5 5 C 1.31793 * 120.81602 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.12525 * 180.02562 * 5 4 3 7 7 N 1.46495 * 109.47062 * 89.99921 * 6 5 4 8 8 C 1.34783 * 119.99931 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99796 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.99878 * 180.02562 * 8 7 6 11 11 C 1.50699 * 109.46970 * 180.02562 * 10 8 7 12 12 C 1.38328 * 119.96224 * 270.02075 * 11 10 8 13 13 C 1.38280 * 120.13484 * 180.02562 * 12 11 10 14 14 C 1.38120 * 120.07150 * 359.67534 * 13 12 11 15 15 C 1.38861 * 119.92830 * 0.59673 * 14 13 12 16 16 O 1.35751 * 120.06597 * 179.69892 * 15 14 13 17 17 C 1.34829 * 117.00376 * 354.17384 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38657 * 120.00083 * 185.03464 * 17 16 15 20 20 N 1.31555 * 119.99797 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99748 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47410 * 90.00109 * 21 19 17 23 23 H 1.48504 * 109.46801 * 209.99865 * 21 19 17 24 24 H 1.48497 * 109.47495 * 329.99577 * 21 19 17 25 25 C 1.38073 * 119.96952 * 89.99515 * 11 10 8 26 26 N 1.31800 * 121.75454 * 0.28515 * 5 4 3 27 27 C 1.32328 * 120.81700 * 359.43548 * 26 5 4 28 28 H 1.09001 * 109.47138 * 90.00452 * 1 2 3 29 29 H 1.09005 * 109.46609 * 209.99471 * 1 2 3 30 30 H 1.08994 * 109.47578 * 329.99639 * 1 2 3 31 31 H 1.08004 * 120.44719 * 359.95654 * 3 2 1 32 32 H 1.09006 * 109.46547 * 330.00636 * 6 5 4 33 33 H 1.08997 * 109.47521 * 210.01026 * 6 5 4 34 34 H 0.97001 * 120.00257 * 0.02562 * 7 6 5 35 35 H 1.08996 * 109.47386 * 59.99804 * 10 8 7 36 36 H 1.08997 * 109.47038 * 299.99640 * 10 8 7 37 37 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 38 38 H 1.08007 * 119.96121 * 179.97438 * 13 12 11 39 39 H 1.08001 * 120.03709 * 180.32387 * 14 13 12 40 40 H 0.96998 * 119.99749 * 179.97438 * 20 19 17 41 41 H 1.08001 * 120.03594 * 0.04940 * 25 11 10 42 42 H 1.07998 * 120.44639 * 180.30474 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1905 0.0000 4 7 3.5394 1.1514 0.0005 5 6 4.1809 0.0001 0.0015 6 6 5.6879 0.0001 0.0027 7 7 6.1751 0.0007 1.3842 8 6 7.5001 0.0014 1.6315 9 8 8.2889 0.0018 0.7103 10 6 8.0013 0.0014 3.0527 11 6 9.5083 0.0028 3.0538 12 6 10.2002 -1.1950 3.0536 13 6 11.5830 -1.1979 3.0552 14 6 12.2776 -0.0041 3.0502 15 6 11.5859 1.2000 3.0562 16 8 12.2658 2.3750 3.0575 17 6 13.6072 2.3059 3.1748 18 1 14.1000 1.3449 3.1803 19 6 14.3540 3.4687 3.2883 20 7 15.6628 3.4012 3.4032 21 14 13.5015 5.1307 3.2793 22 1 13.1514 5.5150 4.6703 23 1 14.4113 6.1505 2.6982 24 1 12.2643 5.0482 2.4623 25 6 10.1969 1.1995 3.0546 26 7 3.5395 -1.1513 -0.0035 27 6 2.2168 -1.1905 0.0014 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6972 2.1374 -0.0007 32 1 6.0515 0.8900 -0.5112 33 1 6.0517 -0.8900 -0.5106 34 1 5.5443 0.0007 2.1210 35 1 7.6380 -0.8887 3.5662 36 1 7.6372 0.8912 3.5663 37 1 9.6594 -2.1298 3.0530 38 1 12.1205 -2.1348 3.0554 39 1 13.3576 -0.0070 3.0462 40 1 16.1852 4.2146 3.4822 41 1 9.6562 2.1344 3.0551 42 1 1.6973 -2.1373 0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910663952.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:37 Heat of formation + Delta-G solvation = 10.677313 kcal Electronic energy + Delta-G solvation = -25473.478169 eV Core-core repulsion = 21612.566447 eV Total energy + Delta-G solvation = -3860.911722 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.66006 -39.80886 -38.85305 -36.64574 -35.52189 -34.24333 -33.79782 -32.38430 -32.09438 -29.68228 -29.23593 -27.24986 -25.61600 -25.20314 -25.01942 -22.53276 -21.75068 -21.12209 -20.17545 -18.30444 -17.96146 -17.60608 -17.00912 -16.66916 -16.05657 -15.53319 -15.18443 -15.09288 -14.96953 -14.64233 -14.18633 -13.94826 -13.86700 -13.71578 -13.55875 -13.40243 -13.12920 -13.10368 -12.98670 -12.50875 -12.32241 -12.11309 -11.60017 -11.40456 -11.35379 -11.24321 -10.77922 -10.74349 -10.65334 -10.09654 -10.03136 -9.71549 -9.63166 -9.31816 -9.21948 -8.80264 -8.07253 -7.28048 -6.34232 -4.00617 0.23007 0.56611 2.07779 2.36487 2.74196 2.89547 3.27238 3.28799 3.30446 3.46947 3.56938 3.63772 4.03201 4.19455 4.23384 4.30560 4.52387 4.66586 4.79393 4.90972 4.94576 4.98646 5.13893 5.17939 5.22133 5.28785 5.38595 5.45774 5.49737 5.62653 5.75884 5.85016 5.92043 6.19378 6.20576 6.33110 6.43335 6.60322 6.86598 7.17632 7.28879 7.35683 7.39942 7.56342 7.68413 7.88437 8.11872 8.25677 9.01513 9.65128 10.73664 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.020739 B = 0.002089 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.814104 B =13398.707531 C =14399.534472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.189 4.189 3 C 0.146 3.854 4 N -0.498 5.498 5 C 0.296 3.704 6 C 0.192 3.808 7 N -0.731 5.731 8 C 0.518 3.482 9 O -0.515 6.515 10 C -0.092 4.092 11 C -0.036 4.036 12 C -0.187 4.187 13 C -0.077 4.077 14 C -0.217 4.217 15 C 0.160 3.840 16 O -0.220 6.220 17 C -0.387 4.387 18 H 0.106 0.894 19 C 0.062 3.938 20 N -0.882 5.882 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.259 1.259 25 C -0.174 4.174 26 N -0.499 5.499 27 C 0.146 3.854 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.170 0.830 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.399 0.601 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.278 0.722 41 H 0.114 0.886 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.107 -8.364 -3.852 33.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.193 4.193 3 C -0.020 4.020 4 N -0.211 5.211 5 C 0.028 3.972 6 C 0.067 3.933 7 N -0.386 5.386 8 C 0.304 3.696 9 O -0.388 6.388 10 C -0.131 4.131 11 C -0.036 4.036 12 C -0.206 4.206 13 C -0.095 4.095 14 C -0.236 4.236 15 C 0.108 3.892 16 O -0.125 6.125 17 C -0.463 4.463 18 H 0.123 0.877 19 C -0.140 4.140 20 N -0.520 5.520 21 Si 0.730 3.270 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.183 1.183 25 C -0.193 4.193 26 N -0.212 5.212 27 C -0.021 4.021 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.187 0.813 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.232 0.768 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.150 0.850 40 H 0.088 0.912 41 H 0.132 0.868 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -30.334 -7.993 -4.558 31.699 hybrid contribution -1.486 0.649 0.279 1.646 sum -31.820 -7.344 -4.279 32.936 Atomic orbital electron populations 1.20685 0.88872 1.03761 1.03123 1.21820 0.99380 0.95687 1.02433 1.23256 0.89393 0.98454 0.90886 1.68306 1.10064 1.30355 1.12400 1.23131 0.97577 0.83656 0.92817 1.19843 0.83461 1.04674 0.85304 1.45859 1.07517 1.77899 1.07295 1.20756 0.81066 0.75652 0.92095 1.90778 1.54704 1.47113 1.46216 1.20569 0.94517 1.04717 0.93334 1.18646 0.91930 0.93093 0.99968 1.20427 0.94122 0.96164 1.09877 1.20736 0.93798 0.97006 0.97938 1.21295 1.01074 0.91906 1.09330 1.19011 0.91028 0.85866 0.93289 1.83568 1.21635 1.26556 1.80755 1.20763 0.77379 0.96868 1.51290 0.87670 1.24451 0.94807 0.99036 0.95753 1.69649 1.04425 1.29965 1.47995 0.86191 0.79940 0.81764 0.79081 1.19954 1.20849 1.18336 1.19946 0.91408 0.97314 1.10628 1.68295 1.10058 1.30353 1.12527 1.23240 0.89398 0.98421 0.90991 0.90361 0.90723 0.90704 0.81251 0.88734 0.88780 0.76802 0.88205 0.88172 0.87680 0.87170 0.85003 0.91163 0.86792 0.81275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.20 10.06 36.00 0.36 0.16 16 2 C -0.19 -0.96 5.91 -104.36 -0.62 -1.58 16 3 C 0.15 0.96 11.01 -17.20 -0.19 0.77 16 4 N -0.50 -4.80 10.33 -10.72 -0.11 -4.91 16 5 C 0.30 2.97 7.01 -157.19 -1.10 1.87 16 6 C 0.19 2.13 6.11 -5.19 -0.03 2.10 16 7 N -0.73 -7.99 5.55 -61.47 -0.34 -8.34 16 8 C 0.52 7.41 7.82 -10.98 -0.09 7.32 16 9 O -0.51 -9.85 16.03 5.56 0.09 -9.76 16 10 C -0.09 -1.18 5.83 -29.04 -0.17 -1.35 16 11 C -0.04 -0.64 4.37 -104.65 -0.46 -1.10 16 12 C -0.19 -3.34 9.70 -39.53 -0.38 -3.72 16 13 C -0.08 -1.48 10.04 -39.61 -0.40 -1.88 16 14 C -0.22 -4.95 9.17 -39.39 -0.36 -5.31 16 15 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 16 O -0.22 -6.06 8.59 0.05 0.00 -6.06 16 17 C -0.39 -11.29 9.95 30.89 0.31 -10.98 16 18 H 0.11 3.13 5.44 -52.49 -0.29 2.84 16 19 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 20 N -0.88 -26.10 13.96 55.48 0.77 -25.32 16 21 Si 0.90 22.36 28.62 -169.99 -4.86 17.49 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.26 -6.48 7.11 56.52 0.40 -6.08 16 25 C -0.17 -3.66 9.64 -39.40 -0.38 -4.04 16 26 N -0.50 -4.65 10.33 -10.72 -0.11 -4.76 16 27 C 0.15 0.92 11.01 -17.20 -0.19 0.73 16 28 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.07 0.07 8.10 -51.93 -0.42 -0.35 16 30 H 0.07 0.08 8.10 -51.93 -0.42 -0.34 16 31 H 0.17 0.61 8.06 -52.48 -0.42 0.19 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.40 3.40 8.46 -40.82 -0.35 3.05 16 35 H 0.10 0.99 8.09 -51.93 -0.42 0.57 16 36 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 39 H 0.13 3.13 5.64 -52.49 -0.30 2.83 16 40 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.11 2.26 8.06 -52.49 -0.42 1.83 16 42 H 0.17 0.55 8.06 -52.49 -0.42 0.13 16 LS Contribution 369.46 15.07 5.57 5.57 Total: -1.00 -35.91 369.46 -8.17 -44.08 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -5.13 Total: 3.68 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -4.05 Total: -11.67 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.21 Total: -43.33 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.09 Total: -15.82 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.86 Total: 17.49 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.91 -8.17 -44.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910663952.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.755 kcal (2) G-P(sol) polarization free energy of solvation -35.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds