Wall clock time and date at job start Tue Mar 31 2020 15:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38597 * 120.80103 * 2 1 4 4 N 1.32331 * 119.10934 * 179.97438 * 3 2 1 5 5 C 1.31793 * 120.81602 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.12525 * 180.02562 * 5 4 3 7 7 N 1.46495 * 109.47062 * 89.99921 * 6 5 4 8 8 C 1.34783 * 119.99931 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99796 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.99878 * 180.02562 * 8 7 6 11 11 C 1.50699 * 109.46970 * 180.02562 * 10 8 7 12 12 C 1.38328 * 119.96224 * 270.02075 * 11 10 8 13 13 C 1.38280 * 120.13484 * 180.02562 * 12 11 10 14 14 C 1.38120 * 120.07150 * 359.67534 * 13 12 11 15 15 C 1.38861 * 119.92830 * 0.59673 * 14 13 12 16 16 O 1.35751 * 120.06597 * 179.69892 * 15 14 13 17 17 C 1.34829 * 117.00376 * 354.17384 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38657 * 120.00083 * 185.03464 * 17 16 15 20 20 N 1.31555 * 119.99797 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99748 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47410 * 90.00109 * 21 19 17 23 23 H 1.48504 * 109.46801 * 209.99865 * 21 19 17 24 24 H 1.48497 * 109.47495 * 329.99577 * 21 19 17 25 25 C 1.38073 * 119.96952 * 89.99515 * 11 10 8 26 26 N 1.31800 * 121.75454 * 0.28515 * 5 4 3 27 27 C 1.32328 * 120.81700 * 359.43548 * 26 5 4 28 28 H 1.09001 * 109.47138 * 90.00452 * 1 2 3 29 29 H 1.09005 * 109.46609 * 209.99471 * 1 2 3 30 30 H 1.08994 * 109.47578 * 329.99639 * 1 2 3 31 31 H 1.08004 * 120.44719 * 359.95654 * 3 2 1 32 32 H 1.09006 * 109.46547 * 330.00636 * 6 5 4 33 33 H 1.08997 * 109.47521 * 210.01026 * 6 5 4 34 34 H 0.97001 * 120.00257 * 0.02562 * 7 6 5 35 35 H 1.08996 * 109.47386 * 59.99804 * 10 8 7 36 36 H 1.08997 * 109.47038 * 299.99640 * 10 8 7 37 37 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 38 38 H 1.08007 * 119.96121 * 179.97438 * 13 12 11 39 39 H 1.08001 * 120.03709 * 180.32387 * 14 13 12 40 40 H 0.96998 * 119.99749 * 179.97438 * 20 19 17 41 41 H 1.08001 * 120.03594 * 0.04940 * 25 11 10 42 42 H 1.07998 * 120.44639 * 180.30474 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1905 0.0000 4 7 3.5394 1.1514 0.0005 5 6 4.1809 0.0001 0.0015 6 6 5.6879 0.0001 0.0027 7 7 6.1751 0.0007 1.3842 8 6 7.5001 0.0014 1.6315 9 8 8.2889 0.0018 0.7103 10 6 8.0013 0.0014 3.0527 11 6 9.5083 0.0028 3.0538 12 6 10.2002 -1.1950 3.0536 13 6 11.5830 -1.1979 3.0552 14 6 12.2776 -0.0041 3.0502 15 6 11.5859 1.2000 3.0562 16 8 12.2658 2.3750 3.0575 17 6 13.6072 2.3059 3.1748 18 1 14.1000 1.3449 3.1803 19 6 14.3540 3.4687 3.2883 20 7 15.6628 3.4012 3.4032 21 14 13.5015 5.1307 3.2793 22 1 13.1514 5.5150 4.6703 23 1 14.4113 6.1505 2.6982 24 1 12.2643 5.0482 2.4623 25 6 10.1969 1.1995 3.0546 26 7 3.5395 -1.1513 -0.0035 27 6 2.2168 -1.1905 0.0014 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6972 2.1374 -0.0007 32 1 6.0515 0.8900 -0.5112 33 1 6.0517 -0.8900 -0.5106 34 1 5.5443 0.0007 2.1210 35 1 7.6380 -0.8887 3.5662 36 1 7.6372 0.8912 3.5663 37 1 9.6594 -2.1298 3.0530 38 1 12.1205 -2.1348 3.0554 39 1 13.3576 -0.0070 3.0462 40 1 16.1852 4.2146 3.4822 41 1 9.6562 2.1344 3.0551 42 1 1.6973 -2.1373 0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000910663952.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:36 Heat of formation + Delta-G solvation = -14.698225 kcal Electronic energy + Delta-G solvation = -25474.578535 eV Core-core repulsion = 21612.566447 eV Total energy + Delta-G solvation = -3862.012088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.22048 -41.15723 -40.42813 -38.33411 -36.37992 -34.80287 -34.49539 -34.45263 -33.51085 -31.12680 -30.28676 -28.35910 -27.19651 -26.21798 -25.69957 -23.42844 -23.07892 -22.57079 -21.48644 -19.67569 -19.05976 -18.86130 -18.44945 -17.60896 -16.91079 -16.84611 -16.76542 -16.20184 -15.82787 -15.70683 -15.62967 -15.37167 -15.01318 -14.75203 -14.66566 -14.41363 -14.18162 -14.12824 -13.88453 -13.86224 -13.68335 -13.15818 -13.04054 -12.79714 -12.51924 -12.44233 -12.34083 -11.95125 -11.93249 -11.91522 -11.30904 -11.09718 -10.90057 -10.27365 -10.22869 -10.22365 -9.66399 -9.05845 -8.49894 -6.22455 -0.30581 0.07471 0.49133 0.70887 1.29548 1.34220 1.51271 1.64362 2.04785 2.28157 2.66049 2.75832 2.88172 3.05600 3.13312 3.15914 3.63991 3.74706 3.86511 3.90351 4.01610 4.08457 4.20749 4.29818 4.35878 4.44491 4.55625 4.60903 4.64634 4.71515 4.74321 4.83951 4.97621 5.06011 5.14399 5.23835 5.27162 5.40038 5.43970 5.65694 5.73205 5.77172 5.91834 5.92547 6.25075 6.45877 6.84414 6.99663 7.21727 7.59603 8.61898 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.020739 B = 0.002089 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.814104 B =13398.707531 C =14399.534472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.171 4.171 3 C 0.133 3.867 4 N -0.523 5.523 5 C 0.279 3.721 6 C 0.196 3.804 7 N -0.710 5.710 8 C 0.520 3.480 9 O -0.573 6.573 10 C -0.087 4.087 11 C -0.029 4.029 12 C -0.170 4.170 13 C -0.078 4.078 14 C -0.239 4.239 15 C 0.117 3.883 16 O -0.247 6.247 17 C -0.399 4.399 18 H 0.080 0.920 19 C 0.009 3.991 20 N -0.923 5.923 21 Si 0.971 3.029 22 H -0.262 1.262 23 H -0.266 1.266 24 H -0.268 1.268 25 C -0.181 4.181 26 N -0.519 5.519 27 C 0.135 3.865 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.196 0.804 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.413 0.587 35 H 0.144 0.856 36 H 0.127 0.873 37 H 0.149 0.851 38 H 0.141 0.859 39 H 0.107 0.893 40 H 0.285 0.715 41 H 0.122 0.878 42 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.114 -9.407 -3.211 38.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.175 4.175 3 C -0.032 4.032 4 N -0.237 5.237 5 C 0.011 3.989 6 C 0.070 3.930 7 N -0.365 5.365 8 C 0.307 3.693 9 O -0.451 6.451 10 C -0.126 4.126 11 C -0.030 4.030 12 C -0.188 4.188 13 C -0.096 4.096 14 C -0.259 4.259 15 C 0.069 3.931 16 O -0.155 6.155 17 C -0.476 4.476 18 H 0.097 0.903 19 C -0.189 4.189 20 N -0.564 5.564 21 Si 0.793 3.207 22 H -0.186 1.186 23 H -0.191 1.191 24 H -0.192 1.192 25 C -0.200 4.200 26 N -0.233 5.233 27 C -0.031 4.031 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.213 0.787 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.250 0.750 35 H 0.162 0.838 36 H 0.145 0.855 37 H 0.167 0.833 38 H 0.159 0.841 39 H 0.125 0.875 40 H 0.094 0.906 41 H 0.140 0.860 42 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -35.423 -9.072 -3.890 36.772 hybrid contribution -0.272 0.683 0.039 0.737 sum -35.695 -8.388 -3.851 36.869 Atomic orbital electron populations 1.20790 0.86194 1.05113 1.04107 1.22164 1.01059 0.94623 0.99617 1.23791 0.88560 1.00293 0.90604 1.68244 1.11796 1.30398 1.13306 1.22714 0.96814 0.84314 0.95035 1.19683 0.84910 1.03439 0.84933 1.45657 1.06800 1.76021 1.07981 1.20957 0.81529 0.74757 0.92013 1.90774 1.56243 1.50174 1.47873 1.20677 0.90652 1.08290 0.93002 1.19195 0.94944 0.91795 0.97033 1.21026 0.93580 0.98016 1.06183 1.21118 0.94969 0.96746 0.96776 1.21326 1.00249 0.93265 1.11026 1.19598 0.92518 0.85610 0.95393 1.83507 1.20460 1.28213 1.83355 1.20714 0.78622 0.96337 1.51901 0.90265 1.25279 0.95484 1.02616 0.95518 1.69730 1.05641 1.31235 1.49804 0.85218 0.78540 0.77440 0.79506 1.18633 1.19051 1.19228 1.20280 0.90089 0.99299 1.10318 1.68244 1.11716 1.30100 1.13249 1.23818 0.88554 1.00238 0.90449 0.89318 0.89295 0.89492 0.78735 0.90344 0.89687 0.75044 0.83794 0.85460 0.83333 0.84109 0.87464 0.90580 0.86013 0.78410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.03 10.06 71.24 0.72 0.74 16 2 C -0.17 -1.21 5.91 -19.69 -0.12 -1.33 16 3 C 0.13 1.43 11.01 84.70 0.93 2.36 16 4 N -0.52 -9.48 10.33 -187.84 -1.94 -11.42 16 5 C 0.28 5.34 7.01 138.75 0.97 6.31 16 6 C 0.20 4.29 6.11 85.63 0.52 4.82 16 7 N -0.71 -14.19 5.55 -466.78 -2.59 -16.78 16 8 C 0.52 13.73 7.82 87.66 0.69 14.42 16 9 O -0.57 -21.59 16.03 -3.03 -0.05 -21.64 16 10 C -0.09 -1.89 5.83 29.10 0.17 -1.72 16 11 C -0.03 -0.97 4.37 -19.88 -0.09 -1.05 16 12 C -0.17 -5.51 9.70 22.30 0.22 -5.30 16 13 C -0.08 -2.93 10.04 22.25 0.22 -2.71 16 14 C -0.24 -11.41 9.17 22.39 0.21 -11.20 16 15 C 0.12 5.97 6.65 22.58 0.15 6.12 16 16 O -0.25 -14.37 8.59 -22.74 -0.20 -14.57 16 17 C -0.40 -24.79 9.95 67.92 0.68 -24.12 16 18 H 0.08 5.15 5.44 -2.91 -0.02 5.13 16 19 C 0.01 0.55 5.49 84.83 0.47 1.02 16 20 N -0.92 -57.00 13.96 21.61 0.30 -56.70 16 21 Si 0.97 47.50 28.62 68.60 1.96 49.47 16 22 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.27 -13.30 7.11 99.48 0.71 -12.60 16 25 C -0.18 -7.58 9.64 22.39 0.22 -7.36 16 26 N -0.52 -8.86 10.33 -187.84 -1.94 -10.80 16 27 C 0.13 1.34 11.01 84.70 0.93 2.27 16 28 H 0.09 -0.12 8.14 -2.39 -0.02 -0.14 16 29 H 0.09 -0.21 8.10 -2.38 -0.02 -0.23 16 30 H 0.09 -0.17 8.10 -2.39 -0.02 -0.19 16 31 H 0.20 0.87 8.06 -2.91 -0.02 0.85 16 32 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.41 5.87 8.46 -92.71 -0.78 5.08 16 35 H 0.14 1.94 8.09 -2.39 -0.02 1.92 16 36 H 0.13 2.17 8.08 -2.39 -0.02 2.15 16 37 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 38 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 39 H 0.11 5.55 5.64 -2.91 -0.02 5.53 16 40 H 0.28 16.07 8.31 -92.71 -0.77 15.30 16 41 H 0.12 4.80 8.06 -2.91 -0.02 4.77 16 42 H 0.20 0.61 8.06 -2.91 -0.02 0.58 16 Total: -1.00 -84.71 369.46 2.71 -82.00 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.28 Total: 17.17 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: 6.88 Total: -16.73 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -6.17 Total: -95.70 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -0.24 Total: -36.20 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 1.96 Total: 49.47 kcal Total: -84.71 2.71 -82.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910663952.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.303 kcal (2) G-P(sol) polarization free energy of solvation -84.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds