Wall clock time and date at job start Tue Mar 31 2020 14:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38629 * 120.44489 * 2 1 4 4 C 1.38567 * 118.39794 * 180.02562 * 3 2 1 5 5 N 1.32345 * 119.11120 * 359.97438 * 4 3 2 6 6 C 1.31780 * 120.81601 * 0.02562 * 5 4 3 7 7 C 1.50708 * 119.12371 * 180.02562 * 6 5 4 8 8 N 1.46503 * 109.46715 * 89.99830 * 7 6 5 9 9 C 1.34783 * 119.99585 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99976 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.00059 * 179.97438 * 9 8 7 12 12 C 1.50699 * 109.47151 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96224 * 270.02423 * 12 11 9 14 14 C 1.38281 * 120.13505 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96539 * 89.99818 * 12 11 9 27 27 N 1.31810 * 121.75667 * 0.27328 * 6 5 4 28 28 H 1.08996 * 109.47533 * 90.00738 * 1 2 3 29 29 H 1.09012 * 109.46737 * 210.00266 * 1 2 3 30 30 H 1.08997 * 109.47522 * 329.99963 * 1 2 3 31 31 H 1.08000 * 120.79510 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.44807 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.46713 * 329.99796 * 7 6 5 34 34 H 1.08997 * 109.46911 * 209.99714 * 7 6 5 35 35 H 0.97001 * 120.00603 * 0.02562 * 8 7 6 36 36 H 1.09004 * 109.46756 * 60.00007 * 11 9 8 37 37 H 1.08998 * 109.46908 * 300.00650 * 11 9 8 38 38 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 39 39 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 40 40 H 1.08006 * 120.03715 * 180.31908 * 15 14 13 41 41 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 42 42 H 1.07996 * 120.03547 * 0.04988 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2094 1.1951 0.0000 4 6 3.5942 1.1456 -0.0005 5 7 4.1963 -0.0329 -0.0005 6 6 3.4957 -1.1490 -0.0005 7 6 4.2207 -2.4702 0.0001 8 7 4.4551 -2.8978 1.3816 9 6 5.0921 -4.0597 1.6284 10 8 5.4716 -4.7509 0.7069 11 6 5.3338 -4.4995 3.0494 12 6 6.0586 -5.8207 3.0500 13 6 5.3403 -7.0028 3.0501 14 6 6.0018 -8.2171 3.0501 15 6 7.3825 -8.2530 3.0434 16 6 8.1065 -7.0681 3.0491 17 8 9.4636 -7.1002 3.0486 18 6 10.0473 -8.3100 3.1646 19 1 9.4411 -9.2037 3.1704 20 6 11.4260 -8.4066 3.2762 21 7 12.1644 -7.3179 3.2696 22 14 12.2347 -10.0828 3.4376 23 1 11.1915 -11.1395 3.4193 24 1 13.1705 -10.2920 2.3036 25 1 12.9850 -10.1493 4.7174 26 6 7.4391 -5.8499 3.0499 27 7 2.1776 -1.1406 -0.0058 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 1.6897 2.1419 0.0004 32 1 4.1744 2.0566 -0.0001 33 1 5.1759 -2.3606 -0.5134 34 1 3.6154 -3.2170 -0.5137 35 1 4.1513 -2.3452 2.1186 36 1 4.3787 -4.6083 3.5634 37 1 5.9395 -3.7527 3.5627 38 1 4.2606 -6.9773 3.0501 39 1 5.4382 -9.1383 3.0506 40 1 7.8987 -9.2017 3.0382 41 1 13.1289 -7.3856 3.3480 42 1 7.9993 -4.9266 3.0502 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911007954.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:52 Heat of formation + Delta-G solvation = 9.834347 kcal Electronic energy + Delta-G solvation = -25489.433539 eV Core-core repulsion = 21628.485263 eV Total energy + Delta-G solvation = -3860.948276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.59443 -39.71829 -38.68931 -36.46221 -35.38292 -34.68503 -32.91268 -32.30124 -31.87560 -29.33625 -29.07936 -28.15250 -26.40146 -25.13462 -23.88316 -22.56771 -21.59683 -21.15344 -20.19534 -18.17057 -17.73253 -17.31988 -16.84621 -16.55981 -16.16773 -15.49424 -15.45386 -15.11091 -14.90959 -14.40054 -14.30414 -13.96245 -13.74852 -13.54559 -13.42771 -13.35925 -13.09368 -12.94392 -12.81367 -12.47886 -12.31755 -11.74389 -11.44266 -11.32104 -11.20999 -11.02475 -10.77211 -10.69214 -10.53086 -10.36901 -10.12237 -9.69637 -9.64412 -9.24816 -9.15769 -8.76297 -7.97501 -7.12565 -6.36410 -3.95131 0.31405 0.60285 2.17517 2.48381 2.81443 2.95349 3.18194 3.19115 3.24870 3.29375 3.57368 3.64766 3.98160 4.03663 4.42706 4.56929 4.61730 4.76007 4.91733 4.97410 4.98661 5.11651 5.16415 5.19181 5.31236 5.37258 5.48709 5.54382 5.58767 5.74857 5.84114 5.91538 6.02724 6.26299 6.27050 6.43361 6.54460 6.74877 7.01138 7.16326 7.36011 7.42332 7.46391 7.53193 7.63378 7.92177 8.09037 8.32709 9.09544 9.81393 10.82075 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.026091 B = 0.001977 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.890154 B =14162.298449 C =14903.174801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.174 3.826 3 C -0.226 4.226 4 C 0.151 3.849 5 N -0.507 5.507 6 C 0.310 3.690 7 C 0.192 3.808 8 N -0.731 5.731 9 C 0.518 3.482 10 O -0.515 6.515 11 C -0.091 4.091 12 C -0.033 4.033 13 C -0.195 4.195 14 C -0.075 4.075 15 C -0.230 4.230 16 C 0.154 3.846 17 O -0.180 6.180 18 C -0.389 4.389 19 H 0.092 0.908 20 C 0.037 3.963 21 N -0.865 5.865 22 Si 0.940 3.060 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.277 1.277 26 C -0.173 4.173 27 N -0.506 5.506 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.149 0.851 32 H 0.172 0.828 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.398 0.602 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.268 0.732 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.046 17.405 -3.457 29.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.028 3.972 3 C -0.248 4.248 4 C -0.015 4.015 5 N -0.222 5.222 6 C 0.041 3.959 7 C 0.067 3.933 8 N -0.386 5.386 9 C 0.305 3.695 10 O -0.388 6.388 11 C -0.131 4.131 12 C -0.034 4.034 13 C -0.214 4.214 14 C -0.094 4.094 15 C -0.250 4.250 16 C 0.101 3.899 17 O -0.084 6.084 18 C -0.466 4.466 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.500 5.500 22 Si 0.765 3.235 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.193 4.193 27 N -0.221 5.221 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.167 0.833 32 H 0.189 0.811 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.232 0.768 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.144 0.856 41 H 0.078 0.922 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -21.851 16.240 -4.169 27.542 hybrid contribution -0.215 0.440 0.322 0.586 sum -22.065 16.680 -3.847 27.926 Atomic orbital electron populations 1.20816 0.87558 1.04288 1.03886 1.21834 0.97812 0.88113 0.89469 1.22837 0.96690 1.00630 1.04687 1.23326 0.92188 0.96244 0.89701 1.68318 1.41736 0.98758 1.13346 1.23151 0.86604 0.94446 0.91675 1.19857 0.99789 0.88295 0.85395 1.45853 1.61694 1.23817 1.07228 1.20765 0.76804 0.79814 0.92125 1.90775 1.48712 1.53095 1.46202 1.20570 1.02176 0.97113 0.93267 1.18646 0.92461 0.92505 0.99792 1.20355 0.98034 0.92088 1.10964 1.20674 0.93845 0.96784 0.98063 1.21173 0.94122 0.98554 1.11103 1.19278 0.84950 0.93110 0.92561 1.83978 1.13089 1.32490 1.78861 1.21365 0.90496 0.82841 1.51871 0.89084 1.25274 0.95313 0.99307 0.96739 1.70051 1.05839 1.27624 1.46495 0.85655 0.79300 0.80324 0.78174 1.19135 1.20222 1.20222 1.19956 0.92735 0.96060 1.10532 1.68157 1.09523 1.30613 1.13809 0.89500 0.89675 0.89973 0.83312 0.81106 0.88654 0.88810 0.76816 0.88323 0.88156 0.87907 0.87493 0.85637 0.92198 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.44 10.22 36.00 0.37 -0.07 16 2 C 0.17 1.26 6.82 -82.24 -0.56 0.70 16 3 C -0.23 -1.26 9.86 -39.32 -0.39 -1.65 16 4 C 0.15 1.04 11.30 -17.21 -0.19 0.85 16 5 N -0.51 -5.19 10.33 -10.73 -0.11 -5.30 16 6 C 0.31 3.31 7.01 -157.19 -1.10 2.20 16 7 C 0.19 2.25 6.11 -5.19 -0.03 2.22 16 8 N -0.73 -8.53 5.55 -61.47 -0.34 -8.87 16 9 C 0.52 7.85 7.82 -10.98 -0.09 7.76 16 10 O -0.51 -10.27 16.03 5.55 0.09 -10.18 16 11 C -0.09 -1.26 5.83 -29.04 -0.17 -1.43 16 12 C -0.03 -0.63 4.37 -104.65 -0.46 -1.09 16 13 C -0.20 -3.64 9.70 -39.53 -0.38 -4.02 16 14 C -0.08 -1.49 10.04 -39.61 -0.40 -1.89 16 15 C -0.23 -5.33 9.17 -39.40 -0.36 -5.69 16 16 C 0.15 3.95 6.65 -39.11 -0.26 3.69 16 17 O -0.18 -5.38 9.76 0.05 0.00 -5.38 16 18 C -0.39 -11.29 9.49 30.89 0.29 -11.00 16 19 H 0.09 2.46 5.21 -52.49 -0.27 2.18 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -26.10 13.67 55.48 0.76 -25.35 16 22 Si 0.94 21.20 29.55 -169.99 -5.02 16.17 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 C -0.17 -3.91 9.65 -39.39 -0.38 -4.29 16 27 N -0.51 -5.07 10.27 -6.98 -0.07 -5.14 16 28 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.08 0.16 8.10 -51.93 -0.42 -0.26 16 31 H 0.15 0.34 8.06 -52.49 -0.42 -0.09 16 32 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.40 3.69 8.46 -40.82 -0.35 3.34 16 36 H 0.10 1.06 8.09 -51.93 -0.42 0.64 16 37 H 0.10 1.20 8.08 -51.93 -0.42 0.78 16 38 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.13 2.89 5.64 -52.48 -0.30 2.59 16 41 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.11 2.50 8.06 -52.49 -0.42 2.07 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -37.13 370.76 -8.43 -45.57 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.12 Total: 5.64 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -4.21 Total: -12.74 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.23 Total: -44.66 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.09 Total: -15.56 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.13 -8.43 -45.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911007954.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.399 kcal (2) G-P(sol) polarization free energy of solvation -37.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds