Wall clock time and date at job start Tue Mar 31 2020 14:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38629 * 120.44489 * 2 1 4 4 C 1.38567 * 118.39794 * 180.02562 * 3 2 1 5 5 N 1.32345 * 119.11120 * 359.97438 * 4 3 2 6 6 C 1.31780 * 120.81601 * 0.02562 * 5 4 3 7 7 C 1.50708 * 119.12371 * 180.02562 * 6 5 4 8 8 N 1.46503 * 109.46715 * 89.99830 * 7 6 5 9 9 C 1.34783 * 119.99585 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99976 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.00059 * 179.97438 * 9 8 7 12 12 C 1.50699 * 109.47151 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96224 * 270.02423 * 12 11 9 14 14 C 1.38281 * 120.13505 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96539 * 89.99818 * 12 11 9 27 27 N 1.31810 * 121.75667 * 0.27328 * 6 5 4 28 28 H 1.08996 * 109.47533 * 90.00738 * 1 2 3 29 29 H 1.09012 * 109.46737 * 210.00266 * 1 2 3 30 30 H 1.08997 * 109.47522 * 329.99963 * 1 2 3 31 31 H 1.08000 * 120.79510 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.44807 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.46713 * 329.99796 * 7 6 5 34 34 H 1.08997 * 109.46911 * 209.99714 * 7 6 5 35 35 H 0.97001 * 120.00603 * 0.02562 * 8 7 6 36 36 H 1.09004 * 109.46756 * 60.00007 * 11 9 8 37 37 H 1.08998 * 109.46908 * 300.00650 * 11 9 8 38 38 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 39 39 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 40 40 H 1.08006 * 120.03715 * 180.31908 * 15 14 13 41 41 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 42 42 H 1.07996 * 120.03547 * 0.04988 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2094 1.1951 0.0000 4 6 3.5942 1.1456 -0.0005 5 7 4.1963 -0.0329 -0.0005 6 6 3.4957 -1.1490 -0.0005 7 6 4.2207 -2.4702 0.0001 8 7 4.4551 -2.8978 1.3816 9 6 5.0921 -4.0597 1.6284 10 8 5.4716 -4.7509 0.7069 11 6 5.3338 -4.4995 3.0494 12 6 6.0586 -5.8207 3.0500 13 6 5.3403 -7.0028 3.0501 14 6 6.0018 -8.2171 3.0501 15 6 7.3825 -8.2530 3.0434 16 6 8.1065 -7.0681 3.0491 17 8 9.4636 -7.1002 3.0486 18 6 10.0473 -8.3100 3.1646 19 1 9.4411 -9.2037 3.1704 20 6 11.4260 -8.4066 3.2762 21 7 12.1644 -7.3179 3.2696 22 14 12.2347 -10.0828 3.4376 23 1 11.1915 -11.1395 3.4193 24 1 13.1705 -10.2920 2.3036 25 1 12.9850 -10.1493 4.7174 26 6 7.4391 -5.8499 3.0499 27 7 2.1776 -1.1406 -0.0058 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 1.6897 2.1419 0.0004 32 1 4.1744 2.0566 -0.0001 33 1 5.1759 -2.3606 -0.5134 34 1 3.6154 -3.2170 -0.5137 35 1 4.1513 -2.3452 2.1186 36 1 4.3787 -4.6083 3.5634 37 1 5.9395 -3.7527 3.5627 38 1 4.2606 -6.9773 3.0501 39 1 5.4382 -9.1383 3.0506 40 1 7.8987 -9.2017 3.0382 41 1 13.1289 -7.3856 3.3480 42 1 7.9993 -4.9266 3.0502 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911007954.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:51 Heat of formation + Delta-G solvation = -17.057030 kcal Electronic energy + Delta-G solvation = -25490.599636 eV Core-core repulsion = 21628.485263 eV Total energy + Delta-G solvation = -3862.114374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.20991 -41.10497 -40.35448 -38.22187 -36.32893 -35.34321 -34.34045 -33.78372 -33.24456 -30.91530 -29.83969 -29.15972 -27.70359 -27.08903 -24.45923 -23.40610 -23.17539 -22.65892 -21.54866 -19.54005 -18.89433 -18.74412 -18.27786 -17.48084 -16.87275 -16.83544 -16.61544 -16.13705 -16.05750 -16.01135 -15.79878 -15.47833 -15.00263 -14.78424 -14.44533 -14.36551 -14.06456 -13.96816 -13.85200 -13.74742 -13.56319 -13.14067 -12.97566 -12.77557 -12.48211 -12.37207 -12.21394 -12.07591 -11.89482 -11.63598 -11.19742 -11.11379 -10.80246 -10.46668 -10.31102 -10.24565 -9.63100 -8.96759 -8.46337 -6.14786 -0.27881 0.06661 0.52928 0.76946 1.34267 1.43282 1.53331 1.62372 2.04002 2.18274 2.63252 2.78884 2.89998 3.06750 3.19217 3.44809 3.57130 3.77971 3.89851 4.07257 4.11315 4.13115 4.30538 4.33963 4.34744 4.44661 4.57319 4.60791 4.63752 4.64022 4.74221 4.75259 4.89085 5.07603 5.09978 5.14108 5.23489 5.32098 5.43680 5.66192 5.73928 5.76469 6.00191 6.03866 6.23877 6.43892 6.98200 7.01757 7.19677 7.80290 8.77547 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.026091 B = 0.001977 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.890154 B =14162.298449 C =14903.174801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.158 3.842 3 C -0.207 4.207 4 C 0.139 3.861 5 N -0.535 5.535 6 C 0.294 3.706 7 C 0.195 3.805 8 N -0.710 5.710 9 C 0.520 3.480 10 O -0.572 6.572 11 C -0.088 4.088 12 C -0.026 4.026 13 C -0.179 4.179 14 C -0.074 4.074 15 C -0.246 4.246 16 C 0.111 3.889 17 O -0.235 6.235 18 C -0.413 4.413 19 H 0.101 0.899 20 C -0.026 4.026 21 N -0.922 5.922 22 Si 1.021 2.979 23 H -0.252 1.252 24 H -0.269 1.269 25 H -0.266 1.266 26 C -0.192 4.192 27 N -0.527 5.527 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.189 0.811 32 H 0.201 0.799 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.413 0.587 36 H 0.145 0.855 37 H 0.122 0.878 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.118 0.882 41 H 0.272 0.728 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.895 18.461 -2.778 32.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.012 3.988 3 C -0.229 4.229 4 C -0.025 4.025 5 N -0.251 5.251 6 C 0.025 3.975 7 C 0.070 3.930 8 N -0.365 5.365 9 C 0.308 3.692 10 O -0.450 6.450 11 C -0.127 4.127 12 C -0.027 4.027 13 C -0.198 4.198 14 C -0.092 4.092 15 C -0.265 4.265 16 C 0.061 3.939 17 O -0.142 6.142 18 C -0.489 4.489 19 H 0.118 0.882 20 C -0.223 4.223 21 N -0.561 5.561 22 Si 0.840 3.160 23 H -0.175 1.175 24 H -0.194 1.194 25 H -0.191 1.191 26 C -0.212 4.212 27 N -0.244 5.244 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.128 0.872 31 H 0.207 0.793 32 H 0.218 0.782 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.249 0.751 36 H 0.163 0.837 37 H 0.140 0.860 38 H 0.166 0.834 39 H 0.164 0.836 40 H 0.136 0.864 41 H 0.081 0.919 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -25.793 17.356 -3.469 31.282 hybrid contribution 0.592 0.352 0.070 0.692 sum -25.202 17.708 -3.398 30.988 Atomic orbital electron populations 1.20916 0.85319 1.05258 1.04703 1.22474 0.99314 0.87980 0.88997 1.23252 0.96121 1.01681 1.01803 1.23924 0.93424 0.96057 0.89090 1.68262 1.42726 0.99717 1.14394 1.22719 0.87013 0.93949 0.93779 1.19702 0.99060 0.89347 0.84920 1.45643 1.60062 1.22758 1.07988 1.20940 0.76213 0.80056 0.91982 1.90766 1.51354 1.55071 1.47823 1.20677 1.04170 0.94829 0.93038 1.19161 0.91077 0.95504 0.96966 1.20985 1.00312 0.91222 1.07233 1.21135 0.92432 0.99218 0.96378 1.21296 0.95850 0.97369 1.11962 1.19878 0.84145 0.95320 0.94563 1.83938 1.15362 1.33139 1.81748 1.21874 0.91375 0.83296 1.52387 0.88202 1.26634 0.95553 1.04134 0.95975 1.70199 1.06311 1.30585 1.48995 0.84499 0.78230 0.74666 0.78573 1.17494 1.19416 1.19060 1.20229 0.94639 0.94893 1.11405 1.68114 1.09191 1.32404 1.14651 0.88620 0.90491 0.87217 0.79337 0.78207 0.90372 0.89603 0.75077 0.83696 0.86002 0.83426 0.83621 0.86437 0.91876 0.87573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.54 10.22 71.23 0.73 0.19 16 2 C 0.16 1.90 6.82 42.58 0.29 2.19 16 3 C -0.21 -1.61 9.86 22.44 0.22 -1.39 16 4 C 0.14 1.60 11.30 84.69 0.96 2.56 16 5 N -0.54 -10.53 10.33 -187.85 -1.94 -12.47 16 6 C 0.29 6.15 7.01 138.75 0.97 7.13 16 7 C 0.20 4.66 6.11 85.64 0.52 5.18 16 8 N -0.71 -15.85 5.55 -466.77 -2.59 -18.44 16 9 C 0.52 15.15 7.82 87.66 0.69 15.83 16 10 O -0.57 -23.04 16.03 -3.04 -0.05 -23.09 16 11 C -0.09 -2.18 5.83 29.10 0.17 -2.01 16 12 C -0.03 -0.96 4.37 -19.88 -0.09 -1.05 16 13 C -0.18 -6.08 9.70 22.30 0.22 -5.87 16 14 C -0.07 -2.76 10.04 22.25 0.22 -2.54 16 15 C -0.25 -11.62 9.17 22.39 0.21 -11.41 16 16 C 0.11 5.99 6.65 22.58 0.15 6.14 16 17 O -0.23 -15.06 9.76 -22.74 -0.22 -15.28 16 18 C -0.41 -25.38 9.49 67.92 0.64 -24.73 16 19 H 0.10 5.66 5.21 -2.91 -0.02 5.65 16 20 C -0.03 -1.55 5.49 84.83 0.47 -1.08 16 21 N -0.92 -58.87 13.67 21.61 0.30 -58.57 16 22 Si 1.02 44.79 29.55 68.60 2.03 46.81 16 23 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 26 C -0.19 -8.97 9.65 22.39 0.22 -8.75 16 27 N -0.53 -9.99 10.27 -176.01 -1.81 -11.80 16 28 H 0.10 0.34 8.14 -2.39 -0.02 0.33 16 29 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.11 -0.05 8.10 -2.39 -0.02 -0.07 16 31 H 0.19 -0.12 8.06 -2.91 -0.02 -0.14 16 32 H 0.20 0.90 8.06 -2.91 -0.02 0.88 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.41 6.83 8.46 -92.71 -0.78 6.05 16 36 H 0.15 2.32 8.09 -2.38 -0.02 2.30 16 37 H 0.12 2.57 8.08 -2.39 -0.02 2.55 16 38 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 39 H 0.15 4.30 8.06 -2.91 -0.02 4.27 16 40 H 0.12 5.61 5.64 -2.91 -0.02 5.59 16 41 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 42 H 0.11 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -89.62 370.76 2.58 -87.04 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.28 Total: 25.38 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 6.58 Total: -19.59 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -6.04 Total: -101.28 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -0.27 Total: -38.37 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -89.62 2.58 -87.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911007954.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.987 kcal (2) G-P(sol) polarization free energy of solvation -89.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds