Wall clock time and date at job start Tue Mar 31 2020 14:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38626 * 120.44644 * 2 1 4 4 C 1.38567 * 118.39506 * 179.97438 * 3 2 1 5 5 N 1.32355 * 119.10881 * 0.02562 * 4 3 2 6 6 C 1.31772 * 120.81725 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.12419 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.47301 * 89.99636 * 7 6 5 9 9 C 1.34775 * 119.99904 * 180.02562 * 8 7 6 10 10 O 1.21280 * 120.00014 * 0.02562 * 9 8 7 11 11 C 1.50697 * 120.00040 * 179.97438 * 9 8 7 12 12 C 1.50695 * 109.47436 * 179.97438 * 11 9 8 13 13 C 1.38300 * 119.93634 * 269.73208 * 12 11 9 14 14 C 1.38103 * 120.07235 * 179.72038 * 13 12 11 15 15 C 1.38881 * 119.92859 * 0.56979 * 14 13 12 16 16 O 1.35743 * 120.07033 * 179.67702 * 15 14 13 17 17 C 1.34829 * 117.00323 * 174.48588 * 16 15 14 18 18 H 1.08000 * 119.99772 * 5.06302 * 17 16 15 19 19 C 1.38655 * 120.00285 * 185.06067 * 17 16 15 20 20 N 1.31556 * 119.99986 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99817 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47529 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47049 * 119.99936 * 21 19 17 24 24 H 1.48497 * 109.46877 * 239.99598 * 21 19 17 25 25 C 1.38884 * 119.86119 * 359.70391 * 15 14 13 26 26 C 1.38100 * 119.93123 * 0.02562 * 25 15 14 27 27 N 1.31806 * 121.75822 * 0.27553 * 6 5 4 28 28 H 1.09006 * 109.46740 * 90.00006 * 1 2 3 29 29 H 1.08998 * 109.47298 * 210.00162 * 1 2 3 30 30 H 1.08998 * 109.47046 * 330.00674 * 1 2 3 31 31 H 1.07991 * 120.79715 * 0.02562 * 3 2 1 32 32 H 1.08004 * 120.45042 * 180.02562 * 4 3 2 33 33 H 1.09007 * 109.46470 * 329.99948 * 7 6 5 34 34 H 1.08996 * 109.47457 * 210.00424 * 7 6 5 35 35 H 0.96999 * 119.99614 * 0.02562 * 8 7 6 36 36 H 1.08999 * 109.47119 * 60.00120 * 11 9 8 37 37 H 1.09004 * 109.47334 * 300.00265 * 11 9 8 38 38 H 1.08004 * 119.96372 * 359.97187 * 13 12 11 39 39 H 1.07998 * 120.03412 * 180.26808 * 14 13 12 40 40 H 0.97002 * 119.99992 * 180.02562 * 20 19 17 41 41 H 1.07996 * 120.03050 * 179.97438 * 25 15 14 42 42 H 1.08003 * 119.96708 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1951 0.0000 4 6 3.5943 1.1455 0.0005 5 7 4.1964 -0.0332 0.0005 6 6 3.4956 -1.1492 0.0005 7 6 4.2205 -2.4704 0.0011 8 7 4.4550 -2.8982 1.3824 9 6 5.0927 -4.0596 1.6292 10 8 5.4729 -4.7503 0.7076 11 6 5.3344 -4.4995 3.0501 12 6 6.0591 -5.8207 3.0507 13 6 5.3403 -7.0022 3.0569 14 6 6.0015 -8.2146 3.0516 15 6 7.3900 -8.2466 3.0520 16 8 8.0429 -9.4367 3.0534 17 6 9.3857 -9.3984 2.9383 18 1 9.9003 -8.4489 2.9327 19 6 10.1060 -10.5780 2.8271 20 7 9.4791 -11.7346 2.8334 21 14 11.9665 -10.5248 2.6684 22 1 12.4247 -9.1124 2.6866 23 1 12.5813 -11.2599 3.8028 24 1 12.3724 -11.1599 1.3889 25 6 8.1091 -7.0584 3.0515 26 6 7.4419 -5.8493 3.0511 27 7 2.1776 -1.1407 -0.0049 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6900 2.1418 0.0004 32 1 4.1746 2.0564 0.0010 33 1 5.1758 -2.3609 -0.5125 34 1 3.6153 -3.2172 -0.5129 35 1 4.1512 -2.3456 2.1195 36 1 4.3794 -4.6092 3.5639 37 1 5.9396 -3.7524 3.5638 38 1 4.2605 -6.9767 3.0617 39 1 5.4395 -9.1368 3.0520 40 1 9.9830 -12.5598 2.7560 41 1 9.1888 -7.0801 3.0522 42 1 8.0005 -4.9249 3.0503 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911014007.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:56 Heat of formation + Delta-G solvation = 9.304689 kcal Electronic energy + Delta-G solvation = -25359.464221 eV Core-core repulsion = 21498.492978 eV Total energy + Delta-G solvation = -3860.971244 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.62752 -39.70436 -38.70747 -36.50216 -35.39614 -34.71059 -32.92621 -32.38314 -31.30820 -30.06847 -29.23476 -28.03927 -26.19255 -24.98046 -23.89881 -22.55201 -21.88988 -21.08091 -20.06852 -18.19456 -17.90582 -17.45982 -16.86679 -16.60778 -16.26657 -15.52563 -15.38531 -15.21659 -14.51225 -14.46359 -14.19198 -13.97998 -13.71108 -13.55423 -13.49849 -13.33253 -13.11682 -13.02211 -12.84717 -12.62313 -12.35418 -11.76662 -11.42906 -11.35870 -11.21182 -11.05791 -10.79193 -10.68906 -10.52957 -10.36260 -10.14478 -9.73247 -9.62963 -9.24677 -9.17437 -8.75836 -8.06539 -7.08458 -6.38190 -3.96463 0.28193 0.56750 2.32419 2.33984 2.81368 2.93604 3.17190 3.19120 3.24462 3.26292 3.54905 3.61899 3.94849 4.02943 4.39765 4.53396 4.61101 4.73266 4.89327 4.96958 5.03572 5.08956 5.15626 5.30041 5.32976 5.38588 5.39939 5.46984 5.54784 5.73359 5.81515 5.88289 5.93291 6.25050 6.29970 6.50284 6.51012 6.78596 6.99782 7.13410 7.31930 7.43242 7.45509 7.53033 7.59903 7.92276 8.07529 8.33325 9.07812 9.79051 10.80147 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.030195 B = 0.001855 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.070755 B =15093.818217 C =15555.532725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.175 3.825 3 C -0.226 4.226 4 C 0.150 3.850 5 N -0.508 5.508 6 C 0.310 3.690 7 C 0.192 3.808 8 N -0.732 5.732 9 C 0.513 3.487 10 O -0.516 6.516 11 C -0.077 4.077 12 C -0.170 4.170 13 C -0.059 4.059 14 C -0.191 4.191 15 C 0.157 3.843 16 O -0.179 6.179 17 C -0.389 4.389 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.232 4.232 26 C -0.056 4.056 27 N -0.505 5.505 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.149 0.851 32 H 0.172 0.828 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.398 0.602 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.269 0.731 41 H 0.126 0.874 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.333 28.003 -2.775 32.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.028 3.972 3 C -0.249 4.249 4 C -0.015 4.015 5 N -0.223 5.223 6 C 0.041 3.959 7 C 0.066 3.934 8 N -0.387 5.387 9 C 0.300 3.700 10 O -0.389 6.389 11 C -0.117 4.117 12 C -0.171 4.171 13 C -0.078 4.078 14 C -0.211 4.211 15 C 0.103 3.897 16 O -0.083 6.083 17 C -0.466 4.466 18 H 0.110 0.890 19 C -0.166 4.166 20 N -0.499 5.499 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.252 4.252 26 C -0.075 4.075 27 N -0.221 5.221 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.167 0.833 32 H 0.189 0.811 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.231 0.769 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.127 0.873 39 H 0.135 0.865 40 H 0.078 0.922 41 H 0.144 0.856 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.571 26.113 -3.478 30.602 hybrid contribution 0.346 1.407 0.131 1.455 sum -15.225 27.520 -3.346 31.628 Atomic orbital electron populations 1.20824 0.87528 1.04317 1.03920 1.21847 0.97840 0.88097 0.89371 1.22834 0.96683 1.00642 1.04698 1.23317 0.92201 0.96220 0.89774 1.68309 1.41750 0.98761 1.13485 1.23158 0.86627 0.94441 0.91636 1.19851 0.99686 0.88288 0.85553 1.45916 1.61754 1.23971 1.07100 1.21068 0.76710 0.79604 0.92609 1.90762 1.48856 1.53018 1.46286 1.20389 1.01845 0.97012 0.92480 1.18624 0.93310 0.92328 1.12850 1.20407 0.98012 0.91416 0.97927 1.20154 0.91714 0.97797 1.11403 1.19384 0.91830 0.86345 0.92139 1.83974 1.21508 1.24316 1.78472 1.21380 0.78648 0.94667 1.51897 0.89029 1.25286 1.00473 0.94203 0.96651 1.70053 1.36125 0.97410 1.46319 0.85648 0.80779 0.78787 0.78212 1.19111 1.20206 1.20183 1.21107 1.00484 0.91993 1.11578 1.20518 0.93153 0.96665 0.97119 1.68164 1.09528 1.30610 1.13758 0.89470 0.89636 0.89963 0.83308 0.81138 0.88796 0.88831 0.76904 0.88911 0.88934 0.87345 0.86548 0.92155 0.85589 0.87784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.42 10.22 36.01 0.37 -0.05 16 2 C 0.17 1.22 6.82 -82.24 -0.56 0.66 16 3 C -0.23 -1.18 9.86 -39.32 -0.39 -1.57 16 4 C 0.15 0.96 11.30 -17.20 -0.19 0.77 16 5 N -0.51 -4.90 10.33 -10.73 -0.11 -5.01 16 6 C 0.31 3.17 7.01 -157.20 -1.10 2.07 16 7 C 0.19 2.15 6.11 -5.19 -0.03 2.12 16 8 N -0.73 -8.13 5.55 -61.47 -0.34 -8.47 16 9 C 0.51 7.41 7.82 -10.99 -0.09 7.32 16 10 O -0.52 -9.97 16.03 5.56 0.09 -9.88 16 11 C -0.08 -1.01 5.83 -29.04 -0.17 -1.18 16 12 C -0.17 -3.05 4.38 -104.58 -0.46 -3.51 16 13 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 14 C -0.19 -4.29 9.99 -39.39 -0.39 -4.69 16 15 C 0.16 3.99 6.65 -39.10 -0.26 3.73 16 16 O -0.18 -5.31 9.76 0.07 0.00 -5.31 16 17 C -0.39 -11.27 9.49 30.89 0.29 -10.98 16 18 H 0.09 2.47 5.20 -52.49 -0.27 2.19 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -26.01 13.67 55.48 0.76 -25.25 16 21 Si 0.94 21.18 29.55 -169.99 -5.02 16.15 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 C -0.23 -5.35 9.17 -39.39 -0.36 -5.71 16 26 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 27 N -0.51 -4.94 10.27 -6.98 -0.07 -5.01 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.14 8.10 -51.93 -0.42 -0.28 16 31 H 0.15 0.28 8.06 -52.49 -0.42 -0.14 16 32 H 0.17 0.54 8.06 -52.48 -0.42 0.11 16 33 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.40 3.48 8.46 -40.82 -0.35 3.13 16 36 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16 37 H 0.09 0.98 8.08 -51.93 -0.42 0.57 16 38 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 39 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.13 2.89 5.64 -52.49 -0.30 2.60 16 42 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 370.75 15.07 5.59 5.59 Total: -1.00 -36.81 370.75 -8.43 -45.24 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.11 Total: 4.98 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -4.21 Total: -13.03 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.23 Total: -43.74 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.09 Total: -15.20 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.81 -8.43 -45.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911014007.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.549 kcal (2) G-P(sol) polarization free energy of solvation -36.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds