Wall clock time and date at job start Tue Mar 31 2020 14:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38626 * 120.44644 * 2 1 4 4 C 1.38567 * 118.39506 * 179.97438 * 3 2 1 5 5 N 1.32355 * 119.10881 * 0.02562 * 4 3 2 6 6 C 1.31772 * 120.81725 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.12419 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.47301 * 89.99636 * 7 6 5 9 9 C 1.34775 * 119.99904 * 180.02562 * 8 7 6 10 10 O 1.21280 * 120.00014 * 0.02562 * 9 8 7 11 11 C 1.50697 * 120.00040 * 179.97438 * 9 8 7 12 12 C 1.50695 * 109.47436 * 179.97438 * 11 9 8 13 13 C 1.38300 * 119.93634 * 269.73208 * 12 11 9 14 14 C 1.38103 * 120.07235 * 179.72038 * 13 12 11 15 15 C 1.38881 * 119.92859 * 0.56979 * 14 13 12 16 16 O 1.35743 * 120.07033 * 179.67702 * 15 14 13 17 17 C 1.34829 * 117.00323 * 174.48588 * 16 15 14 18 18 H 1.08000 * 119.99772 * 5.06302 * 17 16 15 19 19 C 1.38655 * 120.00285 * 185.06067 * 17 16 15 20 20 N 1.31556 * 119.99986 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99817 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47529 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47049 * 119.99936 * 21 19 17 24 24 H 1.48497 * 109.46877 * 239.99598 * 21 19 17 25 25 C 1.38884 * 119.86119 * 359.70391 * 15 14 13 26 26 C 1.38100 * 119.93123 * 0.02562 * 25 15 14 27 27 N 1.31806 * 121.75822 * 0.27553 * 6 5 4 28 28 H 1.09006 * 109.46740 * 90.00006 * 1 2 3 29 29 H 1.08998 * 109.47298 * 210.00162 * 1 2 3 30 30 H 1.08998 * 109.47046 * 330.00674 * 1 2 3 31 31 H 1.07991 * 120.79715 * 0.02562 * 3 2 1 32 32 H 1.08004 * 120.45042 * 180.02562 * 4 3 2 33 33 H 1.09007 * 109.46470 * 329.99948 * 7 6 5 34 34 H 1.08996 * 109.47457 * 210.00424 * 7 6 5 35 35 H 0.96999 * 119.99614 * 0.02562 * 8 7 6 36 36 H 1.08999 * 109.47119 * 60.00120 * 11 9 8 37 37 H 1.09004 * 109.47334 * 300.00265 * 11 9 8 38 38 H 1.08004 * 119.96372 * 359.97187 * 13 12 11 39 39 H 1.07998 * 120.03412 * 180.26808 * 14 13 12 40 40 H 0.97002 * 119.99992 * 180.02562 * 20 19 17 41 41 H 1.07996 * 120.03050 * 179.97438 * 25 15 14 42 42 H 1.08003 * 119.96708 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1951 0.0000 4 6 3.5943 1.1455 0.0005 5 7 4.1964 -0.0332 0.0005 6 6 3.4956 -1.1492 0.0005 7 6 4.2205 -2.4704 0.0011 8 7 4.4550 -2.8982 1.3824 9 6 5.0927 -4.0596 1.6292 10 8 5.4729 -4.7503 0.7076 11 6 5.3344 -4.4995 3.0501 12 6 6.0591 -5.8207 3.0507 13 6 5.3403 -7.0022 3.0569 14 6 6.0015 -8.2146 3.0516 15 6 7.3900 -8.2466 3.0520 16 8 8.0429 -9.4367 3.0534 17 6 9.3857 -9.3984 2.9383 18 1 9.9003 -8.4489 2.9327 19 6 10.1060 -10.5780 2.8271 20 7 9.4791 -11.7346 2.8334 21 14 11.9665 -10.5248 2.6684 22 1 12.4247 -9.1124 2.6866 23 1 12.5813 -11.2599 3.8028 24 1 12.3724 -11.1599 1.3889 25 6 8.1091 -7.0584 3.0515 26 6 7.4419 -5.8493 3.0511 27 7 2.1776 -1.1407 -0.0049 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6900 2.1418 0.0004 32 1 4.1746 2.0564 0.0010 33 1 5.1758 -2.3609 -0.5125 34 1 3.6153 -3.2172 -0.5129 35 1 4.1512 -2.3456 2.1195 36 1 4.3794 -4.6092 3.5639 37 1 5.9396 -3.7524 3.5638 38 1 4.2605 -6.9767 3.0617 39 1 5.4395 -9.1368 3.0520 40 1 9.9830 -12.5598 2.7560 41 1 9.1888 -7.0801 3.0522 42 1 8.0005 -4.9249 3.0503 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911014007.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:55 Heat of formation + Delta-G solvation = -17.282701 kcal Electronic energy + Delta-G solvation = -25360.617137 eV Core-core repulsion = 21498.492978 eV Total energy + Delta-G solvation = -3862.124160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.19684 -41.05857 -40.34476 -38.23501 -36.28884 -35.32689 -34.39580 -33.65353 -32.75072 -31.76471 -29.77131 -29.00902 -27.73164 -26.71247 -24.43171 -23.62374 -23.24438 -22.48861 -21.37130 -19.83766 -18.89613 -18.76197 -18.28887 -17.55047 -16.87783 -16.67963 -16.37259 -16.10656 -16.02952 -15.96338 -15.59732 -15.49568 -15.03794 -14.74536 -14.46732 -14.39878 -14.20949 -13.96224 -13.84109 -13.73550 -13.56646 -13.14385 -12.97723 -12.74997 -12.48306 -12.28157 -12.23987 -12.09642 -11.88337 -11.62801 -11.16651 -11.05863 -10.78039 -10.44203 -10.30185 -10.20346 -9.74970 -8.89349 -8.47001 -6.15006 -0.26473 0.07382 0.62907 0.68062 1.34045 1.42815 1.53022 1.69223 2.08156 2.17994 2.64558 2.79547 2.91316 3.07472 3.18860 3.53390 3.57868 3.84103 3.91684 4.06558 4.10341 4.15599 4.21817 4.33538 4.36994 4.50036 4.59417 4.62018 4.65073 4.71026 4.73619 4.81750 4.89584 5.09748 5.10192 5.15764 5.28155 5.32067 5.44197 5.57638 5.72715 5.79117 6.00990 6.03726 6.23570 6.50041 6.97662 7.02729 7.26639 7.79257 8.76742 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.030195 B = 0.001855 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.070755 B =15093.818217 C =15555.532725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.157 3.843 3 C -0.208 4.208 4 C 0.140 3.860 5 N -0.533 5.533 6 C 0.294 3.706 7 C 0.195 3.805 8 N -0.712 5.712 9 C 0.516 3.484 10 O -0.574 6.574 11 C -0.074 4.074 12 C -0.146 4.146 13 C -0.057 4.057 14 C -0.206 4.206 15 C 0.112 3.888 16 O -0.234 6.234 17 C -0.413 4.413 18 H 0.100 0.900 19 C -0.025 4.025 20 N -0.921 5.921 21 Si 1.020 2.980 22 H -0.252 1.252 23 H -0.265 1.265 24 H -0.269 1.269 25 C -0.244 4.244 26 C -0.060 4.060 27 N -0.530 5.530 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.189 0.811 32 H 0.203 0.797 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.413 0.587 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.147 0.853 39 H 0.112 0.888 40 H 0.272 0.728 41 H 0.117 0.883 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.740 32.924 -2.215 37.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.012 3.988 3 C -0.230 4.230 4 C -0.024 4.024 5 N -0.248 5.248 6 C 0.026 3.974 7 C 0.070 3.930 8 N -0.366 5.366 9 C 0.304 3.696 10 O -0.452 6.452 11 C -0.114 4.114 12 C -0.147 4.147 13 C -0.075 4.075 14 C -0.225 4.225 15 C 0.062 3.938 16 O -0.141 6.141 17 C -0.490 4.490 18 H 0.117 0.883 19 C -0.222 4.222 20 N -0.560 5.560 21 Si 0.840 3.160 22 H -0.176 1.176 23 H -0.190 1.190 24 H -0.194 1.194 25 C -0.263 4.263 26 C -0.078 4.078 27 N -0.247 5.247 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.128 0.872 31 H 0.206 0.794 32 H 0.220 0.780 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.249 0.751 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.165 0.835 39 H 0.131 0.869 40 H 0.082 0.918 41 H 0.135 0.865 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.047 31.140 -2.888 35.618 hybrid contribution 0.444 0.273 -0.064 0.525 sum -16.603 31.413 -2.953 35.653 Atomic orbital electron populations 1.20917 0.85512 1.05204 1.04647 1.22450 0.99244 0.88048 0.89060 1.23245 0.96242 1.01580 1.01885 1.23937 0.93322 0.96124 0.89000 1.68262 1.42559 0.99604 1.14395 1.22749 0.86946 0.94059 0.93681 1.19687 0.99067 0.89136 0.85159 1.45689 1.60130 1.22980 1.07792 1.21213 0.76135 0.79764 0.92454 1.90766 1.51585 1.54921 1.47962 1.20508 1.03856 0.94755 0.92241 1.19230 0.93027 0.94544 1.07890 1.20886 1.00029 0.90384 0.96202 1.20443 0.90867 0.99462 1.11771 1.19940 0.93170 0.86322 0.94364 1.83934 1.21952 1.26613 1.81558 1.21867 0.79121 0.95513 1.52452 0.88253 1.26622 1.06266 0.93409 0.95923 1.70197 1.38550 0.98336 1.48910 0.84509 0.73384 0.79573 0.78578 1.17566 1.18987 1.19427 1.21228 1.00309 0.92726 1.12067 1.20944 0.94345 0.96514 0.95983 1.68117 1.09393 1.32438 1.14707 0.88704 0.90616 0.87210 0.79415 0.78043 0.90052 0.90124 0.75132 0.85031 0.85254 0.83504 0.86940 0.91848 0.86483 0.84364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.22 71.24 0.73 0.21 16 2 C 0.16 1.78 6.82 42.58 0.29 2.07 16 3 C -0.21 -1.38 9.86 22.44 0.22 -1.16 16 4 C 0.14 1.36 11.30 84.69 0.96 2.32 16 5 N -0.53 -9.32 10.33 -187.85 -1.94 -11.26 16 6 C 0.29 5.70 7.01 138.75 0.97 6.67 16 7 C 0.20 4.30 6.11 85.64 0.52 4.83 16 8 N -0.71 -14.20 5.55 -466.79 -2.59 -16.79 16 9 C 0.52 13.56 7.82 87.66 0.69 14.25 16 10 O -0.57 -21.70 16.03 -3.03 -0.05 -21.75 16 11 C -0.07 -1.59 5.83 29.10 0.17 -1.42 16 12 C -0.15 -4.83 4.38 -19.83 -0.09 -4.92 16 13 C -0.06 -2.08 9.69 22.25 0.22 -1.86 16 14 C -0.21 -9.52 9.99 22.39 0.22 -9.30 16 15 C 0.11 6.01 6.65 22.58 0.15 6.16 16 16 O -0.23 -14.88 9.76 -22.66 -0.22 -15.11 16 17 C -0.41 -25.34 9.49 67.92 0.64 -24.70 16 18 H 0.10 5.64 5.20 -2.91 -0.02 5.63 16 19 C -0.03 -1.49 5.49 84.83 0.47 -1.03 16 20 N -0.92 -58.67 13.67 21.61 0.30 -58.37 16 21 Si 1.02 44.82 29.55 68.60 2.03 46.85 16 22 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 C -0.24 -11.52 9.17 22.39 0.21 -11.32 16 26 C -0.06 -2.24 9.69 22.25 0.22 -2.03 16 27 N -0.53 -9.63 10.27 -176.01 -1.81 -11.44 16 28 H 0.09 0.33 8.14 -2.38 -0.02 0.31 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.11 -0.08 8.10 -2.39 -0.02 -0.10 16 31 H 0.19 -0.31 8.06 -2.92 -0.02 -0.33 16 32 H 0.20 0.48 8.06 -2.91 -0.02 0.46 16 33 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.41 5.88 8.46 -92.71 -0.78 5.09 16 36 H 0.13 1.93 8.08 -2.39 -0.02 1.91 16 37 H 0.13 1.96 8.08 -2.38 -0.02 1.94 16 38 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 39 H 0.11 5.12 8.06 -2.91 -0.02 5.10 16 40 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 41 H 0.12 5.60 5.64 -2.91 -0.02 5.59 16 42 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -88.85 370.75 2.58 -86.27 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.28 Total: 22.82 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 6.58 Total: -21.22 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -6.04 Total: -97.86 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -0.27 Total: -36.85 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -88.85 2.58 -86.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911014007.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.988 kcal (2) G-P(sol) polarization free energy of solvation -88.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds