Wall clock time and date at job start Tue Mar 31 2020 14:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38874 * 120.33853 * 2 1 4 4 C 1.38305 * 118.50806 * 180.02562 * 3 2 1 5 5 C 1.39143 * 119.09428 * 0.02562 * 4 3 2 6 6 N 1.38992 * 119.70430 * 179.97438 * 5 4 3 7 7 C 1.46503 * 120.00445 * 359.97438 * 6 5 4 8 8 C 1.52994 * 109.47623 * 180.02562 * 7 6 5 9 9 N 1.46498 * 109.47283 * 180.02562 * 8 7 6 10 10 S 1.65600 * 120.00056 * 164.99843 * 9 8 7 11 11 O 1.42098 * 104.27665 * 181.06689 * 10 9 8 12 12 O 1.42098 * 104.28038 * 308.92879 * 10 9 8 13 13 C 1.81404 * 104.44769 * 65.00055 * 10 9 8 14 14 C 1.53000 * 109.47090 * 180.02562 * 13 10 9 15 15 C 1.53002 * 109.47125 * 179.97438 * 14 13 10 16 16 C 1.50700 * 109.46972 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00123 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00011 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00395 * 180.02562 * 18 16 15 20 20 Si 1.86809 * 119.99838 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47240 * 89.99781 * 20 18 16 22 22 H 1.48502 * 109.46987 * 209.99977 * 20 18 16 23 23 H 1.48499 * 109.47027 * 329.99836 * 20 18 16 24 24 N 1.32396 * 120.58609 * 0.02562 * 5 4 3 25 25 C 1.31970 * 121.62524 * 359.97438 * 24 5 4 26 26 H 1.09007 * 109.46936 * 89.99993 * 1 2 3 27 27 H 1.08993 * 109.47747 * 209.99861 * 1 2 3 28 28 H 1.08998 * 109.46982 * 330.00531 * 1 2 3 29 29 H 1.08001 * 120.74845 * 359.97438 * 3 2 1 30 30 H 1.07994 * 120.45256 * 179.72768 * 4 3 2 31 31 H 0.97002 * 119.99871 * 180.02562 * 6 5 4 32 32 H 1.08999 * 109.47011 * 300.00902 * 7 6 5 33 33 H 1.09010 * 109.46557 * 60.00012 * 7 6 5 34 34 H 1.09005 * 109.46709 * 300.00119 * 8 7 6 35 35 H 1.09000 * 109.47098 * 59.99825 * 8 7 6 36 36 H 0.97003 * 119.99886 * 345.00064 * 9 8 7 37 37 H 1.09004 * 109.46966 * 299.99871 * 13 10 9 38 38 H 1.08998 * 109.47218 * 60.00140 * 13 10 9 39 39 H 1.09004 * 109.47036 * 299.99736 * 14 13 10 40 40 H 1.08998 * 109.47051 * 59.99946 * 14 13 10 41 41 H 1.08995 * 109.46920 * 300.00006 * 15 14 13 42 42 H 1.08998 * 109.47118 * 60.00087 * 15 14 13 43 43 H 0.97001 * 120.00015 * 180.02562 * 19 18 16 44 44 H 1.08004 * 119.56936 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1986 0.0000 4 6 3.5908 1.1544 -0.0005 5 6 4.2282 -0.0825 -0.0016 6 7 5.6169 -0.1417 -0.0027 7 6 6.4028 1.0947 -0.0033 8 6 7.8938 0.7513 -0.0051 9 7 8.6796 1.9877 -0.0051 10 16 10.2933 1.9431 0.3644 11 8 10.7074 3.3004 0.2900 12 8 10.3527 1.2251 1.5891 13 6 11.0383 0.9760 -0.9774 14 6 12.5465 0.8616 -0.7470 15 6 13.1747 0.0453 -1.8784 16 6 14.6604 -0.0668 -1.6518 17 1 15.1113 0.3973 -0.7871 18 6 15.4438 -0.7628 -2.5478 19 7 16.7402 -0.8611 -2.3498 20 14 14.6637 -1.5662 -4.0430 21 1 14.6583 -0.6052 -5.1750 22 1 15.4442 -2.7718 -4.4208 23 1 13.2685 -1.9604 -3.7217 24 7 3.5237 -1.2034 -0.0026 25 6 2.2040 -1.1913 -0.0021 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5137 29 1 1.6863 2.1440 -0.0004 30 1 4.1676 2.0674 -0.0050 31 1 6.0656 -1.0016 -0.0038 32 1 6.1633 1.6771 -0.8930 33 1 6.1647 1.6769 0.8870 34 1 8.1335 0.1688 0.8845 35 1 8.1315 0.1693 -0.8955 36 1 8.2547 2.8325 -0.2215 37 1 10.5972 -0.0207 -0.9951 38 1 10.8524 1.4725 -1.9297 39 1 12.9879 1.8581 -0.7291 40 1 12.7319 0.3648 0.2052 41 1 12.7333 -0.9511 -1.8959 42 1 12.9893 0.5417 -2.8309 43 1 17.2914 -1.3505 -2.9804 44 1 1.6625 -2.1258 -0.0026 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921873868.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:04 Heat of formation + Delta-G solvation = -48.648189 kcal Electronic energy + Delta-G solvation = -24233.311731 eV Core-core repulsion = 20505.271413 eV Total energy + Delta-G solvation = -3728.040318 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.61467 -37.54874 -36.99257 -35.91201 -35.14211 -34.86358 -33.29947 -32.24962 -31.60413 -28.86255 -28.43043 -26.14292 -24.37160 -23.66926 -22.96515 -21.75091 -20.57055 -19.42899 -18.23594 -17.75929 -17.03676 -16.92970 -16.41434 -16.15775 -15.76638 -15.43477 -15.24033 -14.81453 -14.66899 -14.46249 -14.23791 -14.18254 -13.52718 -13.36262 -12.97477 -12.87699 -12.68921 -12.53187 -12.36942 -12.20209 -12.01782 -11.98886 -11.93887 -11.82599 -11.62661 -11.04839 -10.98234 -10.45364 -10.14236 -10.09926 -10.02346 -9.87579 -9.76973 -9.49944 -9.29232 -8.61446 -8.01465 -6.10980 -4.10568 0.27189 0.93480 1.08011 2.40516 2.96206 3.24336 3.32193 3.33661 3.55032 3.78320 4.11189 4.24868 4.29551 4.37704 4.47284 4.54990 4.64652 4.71543 4.80352 4.83917 4.87403 4.99428 5.11694 5.17759 5.22319 5.22798 5.33413 5.45055 5.47498 5.55922 5.67004 5.69428 5.96659 6.08831 6.20279 6.21130 6.58786 6.62041 6.66624 7.08545 7.14995 7.22527 7.68010 7.82451 8.44613 8.93250 9.49968 11.02223 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017537 B = 0.002028 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.248752 B =13800.888030 C =14993.380301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.204 4.204 3 C -0.034 4.034 4 C -0.236 4.236 5 C 0.400 3.600 6 N -0.724 5.724 7 C 0.123 3.877 8 C 0.104 3.896 9 N -1.123 6.123 10 S 2.607 3.393 11 O -0.957 6.957 12 O -0.957 6.957 13 C -0.615 4.615 14 C -0.098 4.098 15 C -0.004 4.004 16 C -0.528 4.528 17 H 0.075 0.925 18 C 0.068 3.932 19 N -0.899 5.899 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.266 1.266 24 N -0.541 5.541 25 C 0.150 3.850 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.408 0.592 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.416 0.584 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.020 0.980 42 H 0.016 0.984 43 H 0.264 0.736 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.918 3.968 3.233 33.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.209 4.209 3 C -0.059 4.059 4 C -0.261 4.261 5 C 0.165 3.835 6 N -0.359 5.359 7 C -0.003 4.003 8 C -0.024 4.024 9 N -0.881 5.881 10 S 2.702 3.298 11 O -0.948 6.948 12 O -0.947 6.947 13 C -0.746 4.746 14 C -0.137 4.137 15 C -0.043 4.043 16 C -0.566 4.566 17 H 0.093 0.907 18 C -0.134 4.134 19 N -0.538 5.538 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.191 1.191 24 N -0.258 5.258 25 C -0.008 4.008 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.244 0.756 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.250 0.750 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.038 0.962 42 H 0.034 0.966 43 H 0.074 0.926 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -31.728 3.530 3.988 32.172 hybrid contribution -0.765 0.000 -1.635 1.805 sum -32.492 3.531 2.353 32.768 Atomic orbital electron populations 1.20568 0.90483 1.02621 1.02042 1.20612 0.97395 0.94049 1.08828 1.21223 0.93222 0.98044 0.93454 1.21416 0.95404 0.97330 1.11911 1.18286 0.85069 0.89382 0.90797 1.44238 1.01698 1.08921 1.81001 1.21479 0.89480 0.86794 1.02534 1.21340 0.90741 0.86812 1.03467 1.55645 1.28463 1.14786 1.89190 1.05196 0.72638 0.75312 0.76680 1.93599 1.80436 1.33094 1.87631 1.93585 1.85024 1.75364 1.40736 1.30595 1.10377 1.14930 1.18730 1.21323 0.86983 1.02817 1.02622 1.19530 0.96861 0.94850 0.93072 1.21128 0.90182 1.34419 1.10889 0.90715 1.25026 0.94710 0.95764 0.97890 1.69909 1.04569 1.42202 1.37101 0.86776 0.79797 0.79300 0.83365 1.20233 1.21242 1.19088 1.67143 1.08766 1.29466 1.20402 1.22298 0.88273 0.97503 0.92722 0.91605 0.91631 0.91832 0.85102 0.85096 0.75587 0.91030 0.90861 0.89172 0.90739 0.74978 0.85493 0.85186 0.90913 0.90891 0.96181 0.96612 0.92601 0.82899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.44 10.03 36.01 0.36 -0.08 16 2 C -0.20 -1.43 5.90 -104.46 -0.62 -2.05 16 3 C -0.03 -0.23 9.85 -39.32 -0.39 -0.62 16 4 C -0.24 -1.84 9.33 -39.22 -0.37 -2.21 16 5 C 0.40 3.74 7.65 -155.03 -1.19 2.55 16 6 N -0.72 -5.59 5.73 -60.42 -0.35 -5.93 16 7 C 0.12 0.75 5.03 -4.04 -0.02 0.73 16 8 C 0.10 0.72 6.25 -4.05 -0.03 0.69 16 9 N -1.12 -9.13 5.89 -10.61 -0.06 -9.19 16 10 S 2.61 32.84 5.46 -107.50 -0.59 32.25 16 11 O -0.96 -15.12 18.08 -57.54 -1.04 -16.16 16 12 O -0.96 -15.18 17.50 -57.54 -1.01 -16.19 16 13 C -0.61 -8.07 6.07 37.16 0.23 -7.85 16 14 C -0.10 -1.83 5.16 -26.73 -0.14 -1.97 16 15 C 0.00 -0.10 4.04 -27.88 -0.11 -0.21 16 16 C -0.53 -14.87 9.66 -34.44 -0.33 -15.20 16 17 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 20 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 24 N -0.54 -5.55 10.39 -12.44 -0.13 -5.68 16 25 C 0.15 1.23 10.85 -17.57 -0.19 1.04 16 26 H 0.07 0.25 8.14 -51.92 -0.42 -0.17 16 27 H 0.06 0.23 8.09 -51.93 -0.42 -0.19 16 28 H 0.06 0.23 8.09 -51.93 -0.42 -0.19 16 29 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 30 H 0.13 0.79 6.71 -52.49 -0.35 0.44 16 31 H 0.41 2.97 8.60 -40.82 -0.35 2.62 16 32 H 0.07 0.36 7.92 -51.93 -0.41 -0.05 16 33 H 0.07 0.43 7.93 -51.92 -0.41 0.02 16 34 H 0.09 0.69 7.69 -51.93 -0.40 0.29 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.42 2.54 8.62 -34.47 -0.30 2.24 16 37 H 0.13 1.40 8.14 -51.92 -0.42 0.98 16 38 H 0.13 1.46 8.14 -51.93 -0.42 1.03 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 42 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 44 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 380.20 15.07 5.73 5.73 Total: -1.00 -37.35 380.20 -11.02 -48.38 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.80 Total: 0.26 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -2.89 Total: -23.31 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.24 Total: -47.53 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -2.05 Total: -32.35 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Atomic # 16 Polarization: 32.84 SS G_CDS: -0.59 Total: 32.25 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.35 -11.02 -48.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921873868.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.273 kcal (2) G-P(sol) polarization free energy of solvation -37.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds