Wall clock time and date at job start Tue Mar 31 2020 14:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38874 * 120.33853 * 2 1 4 4 C 1.38305 * 118.50806 * 180.02562 * 3 2 1 5 5 C 1.39143 * 119.09428 * 0.02562 * 4 3 2 6 6 N 1.38992 * 119.70430 * 179.97438 * 5 4 3 7 7 C 1.46503 * 120.00445 * 359.97438 * 6 5 4 8 8 C 1.52994 * 109.47623 * 180.02562 * 7 6 5 9 9 N 1.46498 * 109.47283 * 180.02562 * 8 7 6 10 10 S 1.65600 * 120.00056 * 164.99843 * 9 8 7 11 11 O 1.42098 * 104.27665 * 181.06689 * 10 9 8 12 12 O 1.42098 * 104.28038 * 308.92879 * 10 9 8 13 13 C 1.81404 * 104.44769 * 65.00055 * 10 9 8 14 14 C 1.53000 * 109.47090 * 180.02562 * 13 10 9 15 15 C 1.53002 * 109.47125 * 179.97438 * 14 13 10 16 16 C 1.50700 * 109.46972 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00123 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00011 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00395 * 180.02562 * 18 16 15 20 20 Si 1.86809 * 119.99838 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47240 * 89.99781 * 20 18 16 22 22 H 1.48502 * 109.46987 * 209.99977 * 20 18 16 23 23 H 1.48499 * 109.47027 * 329.99836 * 20 18 16 24 24 N 1.32396 * 120.58609 * 0.02562 * 5 4 3 25 25 C 1.31970 * 121.62524 * 359.97438 * 24 5 4 26 26 H 1.09007 * 109.46936 * 89.99993 * 1 2 3 27 27 H 1.08993 * 109.47747 * 209.99861 * 1 2 3 28 28 H 1.08998 * 109.46982 * 330.00531 * 1 2 3 29 29 H 1.08001 * 120.74845 * 359.97438 * 3 2 1 30 30 H 1.07994 * 120.45256 * 179.72768 * 4 3 2 31 31 H 0.97002 * 119.99871 * 180.02562 * 6 5 4 32 32 H 1.08999 * 109.47011 * 300.00902 * 7 6 5 33 33 H 1.09010 * 109.46557 * 60.00012 * 7 6 5 34 34 H 1.09005 * 109.46709 * 300.00119 * 8 7 6 35 35 H 1.09000 * 109.47098 * 59.99825 * 8 7 6 36 36 H 0.97003 * 119.99886 * 345.00064 * 9 8 7 37 37 H 1.09004 * 109.46966 * 299.99871 * 13 10 9 38 38 H 1.08998 * 109.47218 * 60.00140 * 13 10 9 39 39 H 1.09004 * 109.47036 * 299.99736 * 14 13 10 40 40 H 1.08998 * 109.47051 * 59.99946 * 14 13 10 41 41 H 1.08995 * 109.46920 * 300.00006 * 15 14 13 42 42 H 1.08998 * 109.47118 * 60.00087 * 15 14 13 43 43 H 0.97001 * 120.00015 * 180.02562 * 19 18 16 44 44 H 1.08004 * 119.56936 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1986 0.0000 4 6 3.5908 1.1544 -0.0005 5 6 4.2282 -0.0825 -0.0016 6 7 5.6169 -0.1417 -0.0027 7 6 6.4028 1.0947 -0.0033 8 6 7.8938 0.7513 -0.0051 9 7 8.6796 1.9877 -0.0051 10 16 10.2933 1.9431 0.3644 11 8 10.7074 3.3004 0.2900 12 8 10.3527 1.2251 1.5891 13 6 11.0383 0.9760 -0.9774 14 6 12.5465 0.8616 -0.7470 15 6 13.1747 0.0453 -1.8784 16 6 14.6604 -0.0668 -1.6518 17 1 15.1113 0.3973 -0.7871 18 6 15.4438 -0.7628 -2.5478 19 7 16.7402 -0.8611 -2.3498 20 14 14.6637 -1.5662 -4.0430 21 1 14.6583 -0.6052 -5.1750 22 1 15.4442 -2.7718 -4.4208 23 1 13.2685 -1.9604 -3.7217 24 7 3.5237 -1.2034 -0.0026 25 6 2.2040 -1.1913 -0.0021 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5137 29 1 1.6863 2.1440 -0.0004 30 1 4.1676 2.0674 -0.0050 31 1 6.0656 -1.0016 -0.0038 32 1 6.1633 1.6771 -0.8930 33 1 6.1647 1.6769 0.8870 34 1 8.1335 0.1688 0.8845 35 1 8.1315 0.1693 -0.8955 36 1 8.2547 2.8325 -0.2215 37 1 10.5972 -0.0207 -0.9951 38 1 10.8524 1.4725 -1.9297 39 1 12.9879 1.8581 -0.7291 40 1 12.7319 0.3648 0.2052 41 1 12.7333 -0.9511 -1.8959 42 1 12.9893 0.5417 -2.8309 43 1 17.2914 -1.3505 -2.9804 44 1 1.6625 -2.1258 -0.0026 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921873868.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:03 Heat of formation + Delta-G solvation = -77.475526 kcal Electronic energy + Delta-G solvation = -24234.561779 eV Core-core repulsion = 20505.271413 eV Total energy + Delta-G solvation = -3729.290365 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.15063 -38.29795 -37.93289 -37.05023 -36.49715 -35.75556 -34.24723 -33.84187 -32.10455 -30.15203 -29.39470 -26.62795 -25.39542 -24.88659 -23.51879 -22.34896 -22.15716 -20.39973 -18.99685 -18.79428 -18.65941 -17.63365 -17.32530 -17.20566 -16.47671 -16.30195 -16.08623 -15.90642 -15.55449 -15.39645 -15.19178 -14.86329 -14.83893 -14.11055 -13.91598 -13.84544 -13.65613 -13.46396 -13.26415 -13.19361 -13.16073 -13.08358 -13.03301 -12.70044 -12.57799 -12.52888 -12.41225 -11.84776 -11.63995 -11.41487 -11.32387 -10.91742 -10.77985 -10.64653 -10.41742 -10.34047 -8.53953 -8.30336 -6.36304 -0.75301 0.38807 0.54476 1.36241 1.38811 1.50193 1.64389 2.32561 2.35646 2.77951 2.99212 3.04906 3.25127 3.60572 3.73102 3.78948 3.94939 4.01860 4.07962 4.19548 4.27373 4.32981 4.34728 4.40645 4.44934 4.63763 4.74222 4.85105 4.88146 4.93469 4.94395 4.98108 5.00001 5.17488 5.23035 5.35289 5.46515 5.50114 5.62561 5.72532 6.06150 6.11537 6.24852 6.59833 6.72273 7.26407 7.28430 8.86555 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017537 B = 0.002028 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.248752 B =13800.888030 C =14993.380301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.206 4.206 3 C -0.040 4.040 4 C -0.243 4.243 5 C 0.379 3.621 6 N -0.726 5.726 7 C 0.127 3.873 8 C 0.097 3.903 9 N -1.104 6.104 10 S 2.633 3.367 11 O -0.992 6.992 12 O -0.993 6.993 13 C -0.610 4.610 14 C -0.105 4.105 15 C -0.006 4.006 16 C -0.545 4.545 17 H 0.029 0.971 18 C 0.000 4.000 19 N -0.952 5.952 20 Si 0.955 3.045 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.238 1.238 24 N -0.572 5.572 25 C 0.131 3.869 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.155 0.845 30 H 0.147 0.853 31 H 0.407 0.593 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.429 0.571 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.031 0.969 43 H 0.267 0.733 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.360 4.015 1.544 36.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.211 4.211 3 C -0.066 4.066 4 C -0.268 4.268 5 C 0.143 3.857 6 N -0.360 5.360 7 C 0.001 3.999 8 C -0.029 4.029 9 N -0.867 5.867 10 S 2.728 3.272 11 O -0.982 6.982 12 O -0.982 6.982 13 C -0.742 4.742 14 C -0.145 4.145 15 C -0.045 4.045 16 C -0.583 4.583 17 H 0.048 0.952 18 C -0.196 4.196 19 N -0.593 5.593 20 Si 0.778 3.222 21 H -0.190 1.190 22 H -0.213 1.213 23 H -0.161 1.161 24 N -0.289 5.289 25 C -0.026 4.026 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.172 0.828 30 H 0.165 0.835 31 H 0.243 0.757 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.266 0.734 37 H 0.173 0.827 38 H 0.176 0.824 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -35.193 3.604 2.314 35.453 hybrid contribution 0.290 0.017 -1.024 1.064 sum -34.903 3.622 1.290 35.114 Atomic orbital electron populations 1.20606 0.88665 1.03498 1.02714 1.20928 0.98770 0.93724 1.07694 1.21596 0.93190 0.99087 0.92724 1.21666 0.96058 0.97410 1.11664 1.18577 0.85653 0.89834 0.91627 1.44282 1.01368 1.09367 1.81032 1.21489 0.88567 0.86396 1.03421 1.21523 0.91064 0.86109 1.04251 1.55112 1.26623 1.16119 1.88828 1.04115 0.73297 0.73912 0.75847 1.93551 1.81730 1.34946 1.87948 1.93545 1.85994 1.75893 1.42810 1.30512 1.06145 1.17248 1.20259 1.21181 0.90947 1.01511 1.00814 1.19513 0.93344 0.96398 0.95198 1.21582 0.93529 1.33745 1.09435 0.95224 1.26120 0.95137 0.96547 1.01832 1.70087 1.06592 1.43724 1.38851 0.85593 0.79985 0.78089 0.78581 1.18999 1.21251 1.16068 1.67119 1.09828 1.30428 1.21573 1.22669 0.88037 0.98823 0.93100 0.90925 0.90881 0.90875 0.82777 0.83511 0.75686 0.89416 0.90699 0.89960 0.88575 0.73388 0.82704 0.82442 0.91875 0.91876 0.94925 0.95082 0.92472 0.81491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.65 10.03 71.24 0.71 0.06 16 2 C -0.21 -2.57 5.90 -19.76 -0.12 -2.69 16 3 C -0.04 -0.48 9.85 22.44 0.22 -0.26 16 4 C -0.24 -3.38 9.33 22.50 0.21 -3.17 16 5 C 0.38 6.65 7.65 133.07 1.02 7.67 16 6 N -0.73 -10.08 5.73 -345.07 -1.98 -12.06 16 7 C 0.13 1.23 5.03 86.38 0.43 1.66 16 8 C 0.10 1.07 6.25 86.38 0.54 1.61 16 9 N -1.10 -14.93 5.89 -187.50 -1.10 -16.03 16 10 S 2.63 62.10 5.46 -56.49 -0.31 61.79 16 11 O -0.99 -30.35 18.08 -127.65 -2.31 -32.66 16 12 O -0.99 -30.75 17.50 -127.65 -2.23 -32.99 16 13 C -0.61 -14.26 6.07 71.98 0.44 -13.82 16 14 C -0.11 -3.85 5.16 30.60 0.16 -3.69 16 15 C -0.01 -0.26 4.04 29.85 0.12 -0.14 16 16 C -0.54 -31.34 9.66 25.60 0.25 -31.09 16 17 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 18 C 0.00 0.02 5.47 84.65 0.46 0.48 16 19 N -0.95 -59.95 13.96 21.45 0.30 -59.65 16 20 Si 0.96 42.89 27.47 68.60 1.88 44.78 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 22 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 23 H -0.24 -9.51 6.54 99.48 0.65 -8.86 16 24 N -0.57 -11.44 10.39 -193.26 -2.01 -13.45 16 25 C 0.13 2.04 10.85 84.62 0.92 2.96 16 26 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 27 H 0.07 0.38 8.09 -2.39 -0.02 0.36 16 28 H 0.07 0.36 8.09 -2.39 -0.02 0.34 16 29 H 0.15 1.00 8.06 -2.91 -0.02 0.97 16 30 H 0.15 1.42 6.71 -2.91 -0.02 1.40 16 31 H 0.41 5.46 8.60 -92.71 -0.80 4.66 16 32 H 0.09 0.59 7.92 -2.39 -0.02 0.57 16 33 H 0.07 0.71 7.93 -2.38 -0.02 0.69 16 34 H 0.08 1.09 7.69 -2.38 -0.02 1.07 16 35 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.43 3.94 8.62 -96.74 -0.83 3.10 16 37 H 0.15 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.16 2.86 8.14 -2.39 -0.02 2.84 16 39 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 40 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.03 1.36 7.20 -2.39 -0.02 1.34 16 42 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 43 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 44 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -83.60 380.20 -3.06 -86.67 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -0.67 Total: 14.02 kcal Atomic # 6 Polarization: -45.78 SS G_CDS: 5.37 Total: -40.42 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -4.79 Total: -101.19 kcal Atomic # 8 Polarization: -61.11 SS G_CDS: -4.54 Total: -65.65 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.88 Total: 44.78 kcal Atomic # 16 Polarization: 62.10 SS G_CDS: -0.31 Total: 61.79 kcal Total: -83.60 -3.06 -86.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921873868.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.190 kcal (2) G-P(sol) polarization free energy of solvation -83.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds