Wall clock time and date at job start Tue Mar 31 2020 15:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.39718 * 2 1 4 4 O 1.21302 * 119.99806 * 354.89739 * 3 2 1 5 5 N 1.34779 * 120.00042 * 174.89925 * 3 2 1 6 6 C 1.40589 * 119.99952 * 185.14351 * 5 3 2 7 7 C 1.40648 * 126.08398 * 0.02562 * 6 5 3 8 8 N 1.30909 * 108.38853 * 179.97438 * 7 6 5 9 9 N 1.40068 * 108.40530 * 0.02562 * 8 7 6 10 10 C 1.37328 * 126.06591 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99896 * 180.02562 * 10 9 8 12 12 C 1.38984 * 120.00155 * 0.02879 * 10 9 8 13 13 N 1.31293 * 119.99988 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99773 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47265 * 359.97438 * 14 12 10 16 16 H 1.48507 * 109.46992 * 119.99947 * 14 12 10 17 17 H 1.48496 * 109.47079 * 239.99599 * 14 12 10 18 18 C 1.35680 * 126.08172 * 179.71483 * 6 5 3 19 19 C 1.53067 * 109.43651 * 240.11250 * 2 1 3 20 20 C 1.53409 * 108.31631 * 288.09311 * 19 2 1 21 21 O 1.42829 * 108.37234 * 295.30942 * 20 19 2 22 22 C 1.35848 * 117.84303 * 49.26549 * 21 20 19 23 23 C 1.39146 * 118.49413 * 162.69735 * 22 21 20 24 24 C 1.37960 * 120.21106 * 179.72108 * 23 22 21 25 25 C 1.38290 * 119.95902 * 0.02562 * 24 23 22 26 26 C 1.38094 * 119.98506 * 0.09027 * 25 24 23 27 27 C 1.38364 * 121.80221 * 342.60130 * 22 21 20 28 28 H 1.09000 * 109.46838 * 300.10764 * 1 2 3 29 29 H 1.09000 * 109.47342 * 60.11187 * 1 2 3 30 30 H 1.08999 * 109.46943 * 180.11087 * 1 2 3 31 31 H 0.97004 * 120.00034 * 5.14496 * 5 3 2 32 32 H 1.08000 * 125.80428 * 359.97438 * 7 6 5 33 33 H 0.97000 * 119.99807 * 180.02562 * 13 12 10 34 34 H 1.08004 * 126.24624 * 359.96226 * 18 6 5 35 35 H 1.08996 * 109.69034 * 168.39277 * 19 2 1 36 36 H 1.08994 * 109.69490 * 47.79881 * 19 2 1 37 37 H 1.09000 * 109.68715 * 175.58266 * 20 19 2 38 38 H 1.09003 * 109.68420 * 55.02294 * 20 19 2 39 39 H 1.08007 * 119.89115 * 359.77183 * 23 22 21 40 40 H 1.08003 * 120.02181 * 180.27917 * 24 23 22 41 41 H 1.08007 * 120.00546 * 180.11252 * 25 24 23 42 42 H 1.08002 * 119.84522 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0305 1.4215 0.0000 4 8 1.2449 2.3411 -0.0934 5 7 3.3509 1.6710 0.1038 6 6 3.8095 2.9955 0.2127 7 6 3.0080 4.1512 0.2272 8 7 3.7900 5.1947 0.3418 9 7 5.1163 4.7488 0.4042 10 6 6.2310 5.5416 0.5256 11 1 7.2121 5.0917 0.5642 12 6 6.0966 6.9230 0.5989 13 7 4.9040 7.4700 0.5515 14 14 7.6129 8.0013 0.7649 15 1 8.8270 7.1469 0.7960 16 1 7.6895 8.9292 -0.3922 17 1 7.5274 8.7853 2.0231 18 6 5.1037 3.3860 0.3285 19 6 2.0393 -0.7193 -1.2515 20 6 1.7732 -2.2210 -1.0863 21 8 2.5571 -2.6995 0.0076 22 6 2.5071 -2.0066 1.1750 23 6 2.9510 -2.6306 2.3368 24 6 2.9213 -1.9577 3.5409 25 6 2.4487 -0.6592 3.5949 26 6 2.0051 -0.0378 2.4442 27 6 2.0316 -0.7085 1.2326 28 1 -0.3633 0.5155 0.8890 29 1 -0.3634 0.5121 -0.8910 30 1 -0.3633 -1.0277 0.0020 31 1 3.9848 0.9367 0.1033 32 1 1.9306 4.1737 0.1559 33 1 4.8103 8.4341 0.6023 34 1 5.9667 2.7371 0.3542 35 1 3.1095 -0.5461 -1.3646 36 1 1.5115 -0.3471 -2.1295 37 1 2.0561 -2.7466 -1.9984 38 1 0.7157 -2.3860 -0.8799 39 1 3.3207 -3.6446 2.2956 40 1 3.2708 -2.4434 4.4400 41 1 2.4269 -0.1312 4.5368 42 1 1.6369 0.9765 2.4890 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931193218.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:19 Heat of formation + Delta-G solvation = 36.384536 kcal Electronic energy + Delta-G solvation = -27789.564030 eV Core-core repulsion = 23929.767056 eV Total energy + Delta-G solvation = -3859.796974 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.39251 -39.75057 -38.60286 -37.60086 -35.15099 -34.23373 -33.09446 -30.84665 -30.40897 -30.21638 -28.34674 -27.88531 -25.44315 -24.50011 -23.71617 -22.76698 -21.15188 -20.66371 -19.51295 -18.99872 -18.09597 -17.49906 -16.88513 -16.34481 -16.15502 -15.46358 -15.27964 -15.04691 -14.57084 -14.30381 -14.07680 -13.86682 -13.68262 -13.59282 -13.32834 -13.07339 -12.90814 -12.56675 -12.18901 -12.03853 -11.90714 -11.65931 -11.53351 -11.42260 -11.27792 -11.14371 -10.93992 -10.78568 -10.66950 -10.50537 -10.14066 -9.26823 -9.14574 -8.83223 -8.77755 -8.26983 -8.04997 -6.68032 -6.55212 -4.21961 1.19882 1.35489 2.77727 3.01176 3.05451 3.11357 3.11810 3.51842 3.66657 3.69881 3.88104 4.34804 4.39413 4.48247 4.58799 4.67374 4.84006 4.89331 5.00164 5.02934 5.09063 5.19315 5.24495 5.35006 5.37626 5.42531 5.65198 5.69847 5.74958 5.84959 5.95923 6.16190 6.22204 6.26171 6.38904 6.47462 6.49793 6.67367 6.91968 6.96561 7.13489 7.25177 7.29572 7.86822 8.18205 8.29676 8.63368 8.85572 9.38820 9.68033 10.40913 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019290 B = 0.003139 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.165361 B = 8919.249466 C = 9414.889763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.031 4.031 3 C 0.514 3.486 4 O -0.531 6.531 5 N -0.617 5.617 6 C -0.058 4.058 7 C -0.034 4.034 8 N -0.260 5.260 9 N -0.142 5.142 10 C -0.323 4.323 11 H 0.116 0.884 12 C 0.046 3.954 13 N -0.770 5.770 14 Si 0.934 3.066 15 H -0.263 1.263 16 H -0.274 1.274 17 H -0.274 1.274 18 C -0.083 4.083 19 C -0.151 4.151 20 C 0.063 3.937 21 O -0.316 6.316 22 C 0.137 3.863 23 C -0.153 4.153 24 C -0.084 4.084 25 C -0.149 4.149 26 C -0.067 4.067 27 C -0.151 4.151 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.396 0.604 32 H 0.175 0.825 33 H 0.274 0.726 34 H 0.144 0.856 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.069 0.931 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.234 -19.450 0.854 19.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.035 4.035 3 C 0.299 3.701 4 O -0.408 6.408 5 N -0.259 5.259 6 C -0.163 4.163 7 C -0.209 4.209 8 N -0.091 5.091 9 N 0.090 4.910 10 C -0.455 4.455 11 H 0.134 0.866 12 C -0.171 4.171 13 N -0.397 5.397 14 Si 0.758 3.242 15 H -0.187 1.187 16 H -0.199 1.199 17 H -0.199 1.199 18 C -0.234 4.234 19 C -0.189 4.189 20 C -0.012 4.012 21 O -0.230 6.230 22 C 0.091 3.909 23 C -0.172 4.172 24 C -0.102 4.102 25 C -0.168 4.168 26 C -0.085 4.085 27 C -0.152 4.152 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.229 0.771 32 H 0.191 0.809 33 H 0.085 0.915 34 H 0.162 0.838 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.128 0.872 38 H 0.087 0.913 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.752 -17.443 0.831 18.098 hybrid contribution 0.963 -0.614 -0.020 1.142 sum -3.789 -18.058 0.811 18.469 Atomic orbital electron populations 1.21727 0.90964 1.01390 1.03974 1.19654 0.97982 0.92698 0.93131 1.19859 0.82280 0.89668 0.78314 1.90602 1.55206 1.45264 1.49734 1.42478 1.06564 1.06570 1.70244 1.17272 0.92336 0.83530 1.23198 1.24069 1.00100 0.88697 1.08076 1.78248 0.85588 1.19787 1.25476 1.44541 1.05436 1.02101 1.38937 1.19917 0.84434 0.88397 1.52788 0.86622 1.25632 0.98360 0.97526 0.95541 1.70227 1.21953 1.11989 1.35523 0.85773 0.80236 0.79701 0.78490 1.18699 1.19915 1.19915 1.21256 0.95986 0.86491 1.19659 1.22350 1.03222 0.95510 0.97769 1.23023 0.95464 0.94124 0.88550 1.85988 1.65541 1.52267 1.19192 1.18634 0.96775 0.89648 0.85794 1.20541 1.05678 1.00819 0.90158 1.20941 0.97809 0.94513 0.96973 1.21043 1.01721 0.95445 0.98545 1.21024 0.96538 0.99588 0.91332 1.19500 1.06629 0.93817 0.95260 0.91422 0.91075 0.92352 0.77131 0.80860 0.91548 0.83834 0.89874 0.88813 0.87166 0.91307 0.85311 0.85468 0.85747 0.85643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 7.53 37.16 0.28 -1.19 16 2 C -0.03 -0.40 0.51 -156.75 -0.08 -0.48 16 3 C 0.51 8.98 5.18 -10.98 -0.06 8.92 16 4 O -0.53 -11.19 13.16 5.54 0.07 -11.12 16 5 N -0.62 -11.29 5.16 -10.00 -0.05 -11.34 16 6 C -0.06 -1.35 6.90 -83.84 -0.58 -1.92 16 7 C -0.03 -0.90 10.85 -17.04 -0.18 -1.08 16 8 N -0.26 -7.60 10.40 30.80 0.32 -7.28 16 9 N -0.14 -3.94 3.74 -11.41 -0.04 -3.98 16 10 C -0.32 -8.62 10.25 -14.81 -0.15 -8.77 16 11 H 0.12 2.77 7.83 -52.49 -0.41 2.36 16 12 C 0.05 1.21 5.50 -17.51 -0.10 1.11 16 13 N -0.77 -21.63 11.81 55.49 0.66 -20.98 16 14 Si 0.93 19.04 29.55 -169.99 -5.02 14.02 16 15 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 16 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 17 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 18 C -0.08 -1.99 11.49 -16.39 -0.19 -2.17 16 19 C -0.15 -1.58 4.91 -26.48 -0.13 -1.71 16 20 C 0.06 0.55 6.96 37.37 0.26 0.81 16 21 O -0.32 -3.53 10.27 -19.26 -0.20 -3.72 16 22 C 0.14 1.64 6.47 -39.20 -0.25 1.39 16 23 C -0.15 -1.66 9.94 -39.35 -0.39 -2.05 16 24 C -0.08 -0.87 10.04 -39.66 -0.40 -1.27 16 25 C -0.15 -1.75 10.04 -39.61 -0.40 -2.15 16 26 C -0.07 -0.91 9.02 -39.53 -0.36 -1.26 16 27 C -0.15 -1.94 4.37 -104.44 -0.46 -2.40 16 28 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 29 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 30 H 0.06 0.56 6.66 -51.93 -0.35 0.22 16 31 H 0.40 6.19 8.17 -40.82 -0.33 5.86 16 32 H 0.17 4.54 5.94 -52.49 -0.31 4.23 16 33 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.14 2.92 8.06 -52.48 -0.42 2.49 16 35 H 0.08 0.91 7.53 -51.93 -0.39 0.52 16 36 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 37 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.53 6.57 -51.93 -0.34 0.19 16 39 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 40 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 41 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 42 H 0.13 1.92 7.36 -52.49 -0.39 1.53 16 LS Contribution 348.39 15.07 5.25 5.25 Total: -1.00 -33.27 348.39 -7.23 -40.50 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -3.18 Total: -14.24 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.88 Total: -43.58 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.13 Total: -14.84 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.27 -7.23 -40.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931193218.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.886 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds