Wall clock time and date at job start Tue Mar 31 2020 15:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.39718 * 2 1 4 4 O 1.21302 * 119.99806 * 354.89739 * 3 2 1 5 5 N 1.34779 * 120.00042 * 174.89925 * 3 2 1 6 6 C 1.40589 * 119.99952 * 185.14351 * 5 3 2 7 7 C 1.40648 * 126.08398 * 0.02562 * 6 5 3 8 8 N 1.30909 * 108.38853 * 179.97438 * 7 6 5 9 9 N 1.40068 * 108.40530 * 0.02562 * 8 7 6 10 10 C 1.37328 * 126.06591 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99896 * 180.02562 * 10 9 8 12 12 C 1.38984 * 120.00155 * 0.02879 * 10 9 8 13 13 N 1.31293 * 119.99988 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99773 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47265 * 359.97438 * 14 12 10 16 16 H 1.48507 * 109.46992 * 119.99947 * 14 12 10 17 17 H 1.48496 * 109.47079 * 239.99599 * 14 12 10 18 18 C 1.35680 * 126.08172 * 179.71483 * 6 5 3 19 19 C 1.53067 * 109.43651 * 240.11250 * 2 1 3 20 20 C 1.53409 * 108.31631 * 288.09311 * 19 2 1 21 21 O 1.42829 * 108.37234 * 295.30942 * 20 19 2 22 22 C 1.35848 * 117.84303 * 49.26549 * 21 20 19 23 23 C 1.39146 * 118.49413 * 162.69735 * 22 21 20 24 24 C 1.37960 * 120.21106 * 179.72108 * 23 22 21 25 25 C 1.38290 * 119.95902 * 0.02562 * 24 23 22 26 26 C 1.38094 * 119.98506 * 0.09027 * 25 24 23 27 27 C 1.38364 * 121.80221 * 342.60130 * 22 21 20 28 28 H 1.09000 * 109.46838 * 300.10764 * 1 2 3 29 29 H 1.09000 * 109.47342 * 60.11187 * 1 2 3 30 30 H 1.08999 * 109.46943 * 180.11087 * 1 2 3 31 31 H 0.97004 * 120.00034 * 5.14496 * 5 3 2 32 32 H 1.08000 * 125.80428 * 359.97438 * 7 6 5 33 33 H 0.97000 * 119.99807 * 180.02562 * 13 12 10 34 34 H 1.08004 * 126.24624 * 359.96226 * 18 6 5 35 35 H 1.08996 * 109.69034 * 168.39277 * 19 2 1 36 36 H 1.08994 * 109.69490 * 47.79881 * 19 2 1 37 37 H 1.09000 * 109.68715 * 175.58266 * 20 19 2 38 38 H 1.09003 * 109.68420 * 55.02294 * 20 19 2 39 39 H 1.08007 * 119.89115 * 359.77183 * 23 22 21 40 40 H 1.08003 * 120.02181 * 180.27917 * 24 23 22 41 41 H 1.08007 * 120.00546 * 180.11252 * 25 24 23 42 42 H 1.08002 * 119.84522 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0305 1.4215 0.0000 4 8 1.2449 2.3411 -0.0934 5 7 3.3509 1.6710 0.1038 6 6 3.8095 2.9955 0.2127 7 6 3.0080 4.1512 0.2272 8 7 3.7900 5.1947 0.3418 9 7 5.1163 4.7488 0.4042 10 6 6.2310 5.5416 0.5256 11 1 7.2121 5.0917 0.5642 12 6 6.0966 6.9230 0.5989 13 7 4.9040 7.4700 0.5515 14 14 7.6129 8.0013 0.7649 15 1 8.8270 7.1469 0.7960 16 1 7.6895 8.9292 -0.3922 17 1 7.5274 8.7853 2.0231 18 6 5.1037 3.3860 0.3285 19 6 2.0393 -0.7193 -1.2515 20 6 1.7732 -2.2210 -1.0863 21 8 2.5571 -2.6995 0.0076 22 6 2.5071 -2.0066 1.1750 23 6 2.9510 -2.6306 2.3368 24 6 2.9213 -1.9577 3.5409 25 6 2.4487 -0.6592 3.5949 26 6 2.0051 -0.0378 2.4442 27 6 2.0316 -0.7085 1.2326 28 1 -0.3633 0.5155 0.8890 29 1 -0.3634 0.5121 -0.8910 30 1 -0.3633 -1.0277 0.0020 31 1 3.9848 0.9367 0.1033 32 1 1.9306 4.1737 0.1559 33 1 4.8103 8.4341 0.6023 34 1 5.9667 2.7371 0.3542 35 1 3.1095 -0.5461 -1.3646 36 1 1.5115 -0.3471 -2.1295 37 1 2.0561 -2.7466 -1.9984 38 1 0.7157 -2.3860 -0.8799 39 1 3.3207 -3.6446 2.2956 40 1 3.2708 -2.4434 4.4400 41 1 2.4269 -0.1312 4.5368 42 1 1.6369 0.9765 2.4890 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931193218.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:18 Heat of formation + Delta-G solvation = 15.075942 kcal Electronic energy + Delta-G solvation = -27790.488040 eV Core-core repulsion = 23929.767056 eV Total energy + Delta-G solvation = -3860.720984 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.46079 -41.50030 -40.09633 -38.44627 -36.26553 -35.96469 -34.93181 -32.25331 -31.67013 -31.30156 -29.74606 -29.26237 -27.11077 -25.78755 -24.69556 -23.76510 -22.87606 -22.10958 -21.30988 -20.23628 -19.31052 -18.94021 -18.08396 -17.46945 -17.25367 -17.15233 -16.90842 -15.96424 -15.84990 -15.80034 -15.31556 -15.21654 -14.97178 -14.78138 -14.71109 -14.50513 -14.27065 -13.52804 -13.47133 -13.33470 -13.11378 -12.96818 -12.93787 -12.85744 -12.81623 -12.43952 -12.04499 -12.03553 -11.89351 -11.67769 -11.55923 -11.04351 -10.86384 -10.62263 -10.12149 -9.80433 -9.15350 -8.55356 -8.48730 -6.26027 0.29215 0.44767 1.16947 1.39032 1.46773 1.58275 1.83055 2.01060 2.24083 2.36090 2.47777 2.74848 2.89862 3.07254 3.43950 3.51576 3.63365 3.75867 3.99251 4.11775 4.20733 4.28833 4.39525 4.45285 4.49466 4.54244 4.57065 4.59491 4.79380 4.80259 4.89274 4.95103 4.98272 5.05129 5.06594 5.20646 5.26931 5.32588 5.44527 5.48592 5.59820 5.82216 5.93809 6.28507 6.45929 6.67550 6.71478 7.31521 7.43905 7.65535 8.50956 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019290 B = 0.003139 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.165361 B = 8919.249466 C = 9414.889763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.021 4.021 3 C 0.514 3.486 4 O -0.570 6.570 5 N -0.612 5.612 6 C -0.042 4.042 7 C -0.059 4.059 8 N -0.308 5.308 9 N -0.165 5.165 10 C -0.354 4.354 11 H 0.140 0.860 12 C -0.006 4.006 13 N -0.824 5.824 14 Si 1.020 2.980 15 H -0.241 1.241 16 H -0.272 1.272 17 H -0.272 1.272 18 C -0.083 4.083 19 C -0.150 4.150 20 C 0.064 3.936 21 O -0.319 6.319 22 C 0.135 3.865 23 C -0.153 4.153 24 C -0.076 4.076 25 C -0.158 4.158 26 C -0.089 4.089 27 C -0.160 4.160 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.411 0.589 32 H 0.166 0.834 33 H 0.277 0.723 34 H 0.183 0.817 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.142 0.858 38 H 0.082 0.918 39 H 0.152 0.848 40 H 0.159 0.841 41 H 0.132 0.868 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.354 -22.698 0.799 22.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.025 4.025 3 C 0.302 3.698 4 O -0.449 6.449 5 N -0.255 5.255 6 C -0.148 4.148 7 C -0.234 4.234 8 N -0.140 5.140 9 N 0.066 4.934 10 C -0.485 4.485 11 H 0.157 0.843 12 C -0.217 4.217 13 N -0.452 5.452 14 Si 0.838 3.162 15 H -0.164 1.164 16 H -0.197 1.197 17 H -0.197 1.197 18 C -0.233 4.233 19 C -0.188 4.188 20 C -0.010 4.010 21 O -0.233 6.233 22 C 0.089 3.911 23 C -0.171 4.171 24 C -0.093 4.093 25 C -0.176 4.176 26 C -0.108 4.108 27 C -0.161 4.161 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.247 0.753 32 H 0.183 0.817 33 H 0.086 0.914 34 H 0.200 0.800 35 H 0.098 0.902 36 H 0.122 0.878 37 H 0.160 0.840 38 H 0.100 0.900 39 H 0.170 0.830 40 H 0.177 0.823 41 H 0.150 0.850 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.875 -20.762 0.769 20.974 hybrid contribution 0.277 0.250 0.011 0.374 sum -2.598 -20.512 0.780 20.690 Atomic orbital electron populations 1.21734 0.90358 1.02893 1.02843 1.19599 0.98370 0.89436 0.95051 1.20813 0.81419 0.91499 0.76085 1.90584 1.56083 1.47272 1.51007 1.42446 1.07473 1.05015 1.70541 1.17333 0.91752 0.84952 1.20722 1.24094 0.99943 0.89913 1.09427 1.78143 0.87053 1.21557 1.27258 1.44826 1.05077 1.03477 1.40058 1.20666 0.85138 0.89318 1.53416 0.84263 1.26880 1.01881 0.98791 0.94173 1.70404 1.25022 1.12478 1.37316 0.84530 0.76138 0.77272 0.78215 1.16368 1.19693 1.19709 1.21928 0.97386 0.85851 1.18159 1.22406 1.03010 0.96895 0.96506 1.23269 0.96143 0.92566 0.89019 1.85996 1.65975 1.52129 1.19228 1.18747 0.96418 0.89180 0.86722 1.20902 1.04700 1.01781 0.89756 1.21279 0.96326 0.93557 0.98178 1.21229 1.01730 0.96440 0.98230 1.20915 0.98321 0.98681 0.92842 1.19402 1.07710 0.94529 0.94489 0.93390 0.91464 0.89401 0.75273 0.81710 0.91373 0.80025 0.90209 0.87772 0.84005 0.90012 0.83007 0.82339 0.84964 0.88750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.84 7.53 71.98 0.54 -2.30 16 2 C -0.02 -0.54 0.51 -53.63 -0.03 -0.56 16 3 C 0.51 18.40 5.18 87.66 0.45 18.85 16 4 O -0.57 -25.31 13.16 -3.10 -0.04 -25.35 16 5 N -0.61 -22.51 5.16 -303.92 -1.57 -24.08 16 6 C -0.04 -1.97 6.90 37.73 0.26 -1.71 16 7 C -0.06 -3.28 10.85 85.42 0.93 -2.35 16 8 N -0.31 -18.92 10.40 -56.47 -0.59 -19.51 16 9 N -0.17 -9.37 3.74 -190.01 -0.71 -10.08 16 10 C -0.35 -19.07 10.25 84.01 0.86 -18.20 16 11 H 0.14 6.53 7.83 -2.91 -0.02 6.50 16 12 C -0.01 -0.30 5.50 84.95 0.47 0.17 16 13 N -0.82 -48.13 11.81 21.66 0.26 -47.87 16 14 Si 1.02 38.98 29.55 68.60 2.03 41.01 16 15 H -0.24 -8.25 7.11 99.48 0.71 -7.54 16 16 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 17 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 18 C -0.08 -3.97 11.49 83.38 0.96 -3.02 16 19 C -0.15 -2.82 4.91 30.75 0.15 -2.66 16 20 C 0.06 0.88 6.96 72.12 0.50 1.38 16 21 O -0.32 -5.98 10.27 -91.84 -0.94 -6.92 16 22 C 0.13 2.88 6.47 22.52 0.15 3.02 16 23 C -0.15 -2.80 9.94 22.42 0.22 -2.58 16 24 C -0.08 -1.34 10.04 22.22 0.22 -1.11 16 25 C -0.16 -3.56 10.04 22.25 0.22 -3.34 16 26 C -0.09 -2.45 9.02 22.30 0.20 -2.25 16 27 C -0.16 -3.95 4.37 -19.75 -0.09 -4.04 16 28 H 0.05 1.30 8.12 -2.39 -0.02 1.28 16 29 H 0.07 1.61 8.04 -2.39 -0.02 1.59 16 30 H 0.09 1.52 6.66 -2.39 -0.02 1.51 16 31 H 0.41 12.48 8.17 -92.71 -0.76 11.72 16 32 H 0.17 9.31 5.94 -2.91 -0.02 9.29 16 33 H 0.28 14.79 8.31 -92.71 -0.77 14.02 16 34 H 0.18 7.04 8.06 -2.91 -0.02 7.01 16 35 H 0.08 1.56 7.53 -2.39 -0.02 1.54 16 36 H 0.10 1.74 8.09 -2.39 -0.02 1.72 16 37 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 0.94 6.57 -2.39 -0.02 0.92 16 39 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 40 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 41 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 42 H 0.09 3.12 7.36 -2.91 -0.02 3.10 16 Total: -1.00 -77.08 348.39 4.77 -72.31 By element: Atomic # 1 Polarization: 40.89 SS G_CDS: 0.31 Total: 41.20 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: 6.03 Total: -20.71 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -2.61 Total: -101.53 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.98 Total: -32.28 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -77.08 4.77 -72.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931193218.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.383 kcal (2) G-P(sol) polarization free energy of solvation -77.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds