Wall clock time and date at job start Tue Mar 31 2020 15:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50704 * 109.43275 * 2 1 4 4 O 1.21308 * 119.99173 * 119.92273 * 3 2 1 5 5 N 1.34769 * 120.00349 * 299.91710 * 3 2 1 6 6 C 1.40597 * 119.99949 * 180.02562 * 5 3 2 7 7 C 1.40648 * 126.08176 * 0.04729 * 6 5 3 8 8 N 1.30907 * 108.38298 * 179.70387 * 7 6 5 9 9 N 1.40067 * 108.41113 * 0.40226 * 8 7 6 10 10 C 1.37320 * 126.07294 * 179.85605 * 9 8 7 11 11 H 1.08002 * 120.00430 * 179.69232 * 10 9 8 12 12 C 1.38992 * 119.99664 * 359.41108 * 10 9 8 13 13 N 1.31294 * 120.00157 * 0.27652 * 12 10 9 14 14 Si 1.86803 * 119.99838 * 180.27798 * 12 10 9 15 15 H 1.48496 * 109.47187 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47141 * 119.99952 * 14 12 10 17 17 H 1.48498 * 109.47018 * 239.99998 * 14 12 10 18 18 C 1.35688 * 126.08014 * 179.97438 * 6 5 3 19 19 C 1.53068 * 109.43972 * 119.92004 * 2 1 3 20 20 C 1.53405 * 108.29353 * 168.21303 * 19 2 1 21 21 O 1.42825 * 108.37019 * 295.25165 * 20 19 2 22 22 C 1.35842 * 117.86348 * 49.14905 * 21 20 19 23 23 C 1.39151 * 118.50002 * 162.97982 * 22 21 20 24 24 C 1.37969 * 120.21122 * 179.82165 * 23 22 21 25 25 C 1.38287 * 119.96335 * 359.97438 * 24 23 22 26 26 C 1.38105 * 119.98221 * 0.08084 * 25 24 23 27 27 C 1.38374 * 121.80821 * 342.92459 * 22 21 20 28 28 H 1.09004 * 109.47107 * 59.99648 * 1 2 3 29 29 H 1.08999 * 109.46520 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46590 * 299.99314 * 1 2 3 31 31 H 0.97002 * 120.00333 * 359.97438 * 5 3 2 32 32 H 1.07999 * 125.80726 * 359.95383 * 7 6 5 33 33 H 0.97005 * 119.99961 * 179.97438 * 13 12 10 34 34 H 1.07993 * 126.24688 * 0.02562 * 18 6 5 35 35 H 1.09005 * 109.69677 * 287.91442 * 19 2 1 36 36 H 1.08995 * 109.70109 * 48.51032 * 19 2 1 37 37 H 1.09003 * 109.68333 * 54.96940 * 20 19 2 38 38 H 1.08998 * 109.68496 * 175.53124 * 20 19 2 39 39 H 1.07990 * 119.89261 * 359.83910 * 23 22 21 40 40 H 1.08006 * 120.01941 * 180.02562 * 24 23 22 41 41 H 1.08001 * 120.00997 * 180.09875 * 25 24 23 42 42 H 1.08007 * 119.83946 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0315 1.4212 0.0000 4 8 2.7274 1.8187 0.9106 5 7 1.7067 2.2504 -1.0116 6 6 2.1750 3.5761 -1.0118 7 6 2.9864 4.1681 -0.0272 8 7 3.2195 5.4083 -0.3753 9 7 2.5614 5.6591 -1.5860 10 6 2.5610 6.8468 -2.2753 11 1 2.0214 6.9304 -3.2071 12 6 3.2504 7.9432 -1.7707 13 7 3.9063 7.8418 -0.6378 14 14 3.2436 9.5612 -2.7043 15 1 2.4376 9.4146 -3.9428 16 1 2.6519 10.6227 -1.8508 17 1 4.6363 9.9323 -3.0617 18 6 1.9256 4.5115 -1.9625 19 6 2.0395 -0.7200 1.2510 20 6 3.5443 -0.9676 1.0849 21 8 3.7345 -1.8664 -0.0087 22 6 3.0949 -1.5914 -1.1751 23 6 3.5311 -2.2222 -2.3362 24 6 2.9047 -1.9716 -3.5397 25 6 1.8396 -1.0913 -3.5938 26 6 1.4048 -0.4626 -2.4436 27 6 2.0309 -0.7087 -1.2330 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 1.1506 1.9324 -1.7399 32 1 3.3577 3.6810 0.8623 33 1 4.3877 8.6069 -0.2859 34 1 1.3323 4.3732 -2.8542 35 1 1.8641 -0.0988 2.1295 36 1 1.5207 -1.6719 1.3640 37 1 4.0508 -0.0250 0.8777 38 1 3.9467 -1.4086 1.9969 39 1 4.3623 -2.9104 -2.2951 40 1 3.2455 -2.4632 -4.4390 41 1 1.3477 -0.8958 -4.5352 42 1 0.5729 0.2249 -2.4886 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931193219.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:24 Heat of formation + Delta-G solvation = 37.395992 kcal Electronic energy + Delta-G solvation = -27881.429814 eV Core-core repulsion = 24021.676701 eV Total energy + Delta-G solvation = -3859.753114 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.38867 -39.71673 -38.54310 -37.57849 -35.16751 -34.29493 -33.13006 -30.72564 -30.35621 -30.22574 -28.82051 -27.69712 -25.13547 -24.41602 -23.76866 -22.40366 -21.50668 -20.84022 -19.53942 -19.12358 -17.96328 -17.45879 -16.98369 -16.41250 -15.74412 -15.44058 -15.13782 -15.03264 -14.82765 -14.26692 -14.17968 -13.94807 -13.57463 -13.48420 -13.24949 -12.96977 -12.93293 -12.56534 -12.29424 -12.13864 -11.86217 -11.73614 -11.65444 -11.43356 -11.28162 -11.05905 -10.92155 -10.70274 -10.51453 -10.42672 -10.14289 -9.42600 -9.17375 -8.82530 -8.73919 -8.20226 -8.06162 -6.70173 -6.56182 -4.23124 1.17129 1.35396 2.78629 3.01136 3.04699 3.10716 3.26826 3.47813 3.66196 3.76589 3.90333 4.32536 4.37981 4.54845 4.63681 4.71128 4.74337 4.96151 5.01928 5.08181 5.17320 5.27771 5.31512 5.37772 5.41622 5.47835 5.63207 5.66694 5.86269 5.90093 5.92720 5.99830 6.21112 6.23483 6.34074 6.42423 6.45365 6.69089 6.90055 6.95225 7.11002 7.23628 7.40335 7.85458 8.15716 8.27755 8.61773 8.83047 9.37608 9.66806 10.39886 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019052 B = 0.003196 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.335415 B = 8760.168856 C = 9331.269132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 C 0.511 3.489 4 O -0.533 6.533 5 N -0.617 5.617 6 C -0.060 4.060 7 C -0.033 4.033 8 N -0.260 5.260 9 N -0.142 5.142 10 C -0.323 4.323 11 H 0.116 0.884 12 C 0.046 3.954 13 N -0.770 5.770 14 Si 0.934 3.066 15 H -0.263 1.263 16 H -0.274 1.274 17 H -0.274 1.274 18 C -0.084 4.084 19 C -0.133 4.133 20 C 0.057 3.943 21 O -0.319 6.319 22 C 0.144 3.856 23 C -0.152 4.152 24 C -0.085 4.085 25 C -0.151 4.151 26 C -0.081 4.081 27 C -0.150 4.150 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.394 0.606 32 H 0.175 0.825 33 H 0.274 0.726 34 H 0.144 0.856 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.003 -17.873 -3.095 19.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.037 4.037 3 C 0.297 3.703 4 O -0.411 6.411 5 N -0.258 5.258 6 C -0.165 4.165 7 C -0.208 4.208 8 N -0.091 5.091 9 N 0.090 4.910 10 C -0.456 4.456 11 H 0.134 0.866 12 C -0.171 4.171 13 N -0.396 5.396 14 Si 0.758 3.242 15 H -0.187 1.187 16 H -0.199 1.199 17 H -0.199 1.199 18 C -0.235 4.235 19 C -0.171 4.171 20 C -0.018 4.018 21 O -0.233 6.233 22 C 0.099 3.901 23 C -0.170 4.170 24 C -0.103 4.103 25 C -0.170 4.170 26 C -0.100 4.100 27 C -0.151 4.151 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.228 0.772 32 H 0.192 0.808 33 H 0.085 0.915 34 H 0.162 0.838 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.126 0.874 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.651 -16.494 -1.913 17.244 hybrid contribution -0.893 -0.013 -1.072 1.396 sum -5.544 -16.507 -2.985 17.667 Atomic orbital electron populations 1.21897 0.91438 1.02988 1.03066 1.19636 0.97526 0.92483 0.94020 1.19987 0.81638 0.86224 0.82485 1.90569 1.38233 1.76193 1.36081 1.42519 1.50181 1.09779 1.23365 1.17291 1.12903 0.84828 1.01514 1.24082 1.02728 0.92937 1.01069 1.78249 1.19081 1.14104 0.97691 1.44542 1.26704 1.06544 1.13169 1.19920 1.34265 0.85508 1.05857 0.86595 1.25638 0.95215 1.00202 0.96009 1.70228 1.22937 1.30703 1.15770 0.85770 0.78751 0.80231 0.79433 1.18694 1.19909 1.19906 1.21245 1.11064 0.88535 1.02617 1.22108 0.96346 1.00980 0.97641 1.23149 0.96394 0.94370 0.87866 1.85952 1.67368 1.50556 1.19377 1.18688 0.90706 0.94612 0.86109 1.20594 1.02425 1.03780 0.90230 1.20933 0.95245 0.97248 0.96876 1.20989 0.98675 0.99057 0.98244 1.20917 0.98934 0.98602 0.91497 1.19510 0.98505 1.01939 0.95163 0.91701 0.91212 0.91260 0.77218 0.80804 0.91528 0.83807 0.88464 0.90117 0.89948 0.87388 0.85263 0.85458 0.85696 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 7.89 37.16 0.29 -1.12 16 2 C -0.03 -0.43 0.55 -156.74 -0.09 -0.52 16 3 C 0.51 8.96 6.09 -10.99 -0.07 8.90 16 4 O -0.53 -11.05 11.53 5.53 0.06 -10.99 16 5 N -0.62 -11.19 5.20 -10.00 -0.05 -11.24 16 6 C -0.06 -1.39 6.90 -83.84 -0.58 -1.97 16 7 C -0.03 -0.87 10.85 -17.04 -0.18 -1.05 16 8 N -0.26 -7.61 10.40 30.80 0.32 -7.29 16 9 N -0.14 -3.91 3.74 -11.41 -0.04 -3.96 16 10 C -0.32 -8.59 10.25 -14.81 -0.15 -8.74 16 11 H 0.12 2.76 7.83 -52.49 -0.41 2.35 16 12 C 0.05 1.20 5.50 -17.50 -0.10 1.11 16 13 N -0.77 -21.59 11.81 55.50 0.66 -20.93 16 14 Si 0.93 18.96 29.55 -169.99 -5.02 13.94 16 15 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 16 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 17 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 18 C -0.08 -1.99 11.49 -16.39 -0.19 -2.17 16 19 C -0.13 -1.60 4.61 -26.49 -0.12 -1.72 16 20 C 0.06 0.73 6.87 37.37 0.26 0.99 16 21 O -0.32 -4.42 10.27 -19.25 -0.20 -4.62 16 22 C 0.14 1.97 6.47 -39.19 -0.25 1.72 16 23 C -0.15 -1.80 9.94 -39.34 -0.39 -2.19 16 24 C -0.08 -0.87 10.04 -39.66 -0.40 -1.27 16 25 C -0.15 -1.56 10.04 -39.61 -0.40 -1.96 16 26 C -0.08 -0.92 8.08 -39.53 -0.32 -1.24 16 27 C -0.15 -1.96 4.68 -104.44 -0.49 -2.44 16 28 H 0.06 0.61 5.96 -51.93 -0.31 0.30 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.39 5.81 6.03 -40.82 -0.25 5.56 16 32 H 0.18 4.55 5.92 -52.49 -0.31 4.24 16 33 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.14 2.85 8.06 -52.49 -0.42 2.43 16 35 H 0.10 1.18 7.68 -51.93 -0.40 0.79 16 36 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 37 H 0.08 1.30 6.45 -51.93 -0.34 0.96 16 38 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 41 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.12 1.18 5.30 -52.48 -0.28 0.90 16 LS Contribution 342.32 15.07 5.16 5.16 Total: -1.00 -33.63 342.32 -7.10 -40.73 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -4.81 Total: 12.89 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -3.17 Total: -13.69 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.88 Total: -43.42 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.13 Total: -15.61 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.63 -7.10 -40.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931193219.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.124 kcal (2) G-P(sol) polarization free energy of solvation -33.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds