Wall clock time and date at job start Tue Mar 31 2020 15:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50704 * 109.43275 * 2 1 4 4 O 1.21308 * 119.99173 * 119.92273 * 3 2 1 5 5 N 1.34769 * 120.00349 * 299.91710 * 3 2 1 6 6 C 1.40597 * 119.99949 * 180.02562 * 5 3 2 7 7 C 1.40648 * 126.08176 * 0.04729 * 6 5 3 8 8 N 1.30907 * 108.38298 * 179.70387 * 7 6 5 9 9 N 1.40067 * 108.41113 * 0.40226 * 8 7 6 10 10 C 1.37320 * 126.07294 * 179.85605 * 9 8 7 11 11 H 1.08002 * 120.00430 * 179.69232 * 10 9 8 12 12 C 1.38992 * 119.99664 * 359.41108 * 10 9 8 13 13 N 1.31294 * 120.00157 * 0.27652 * 12 10 9 14 14 Si 1.86803 * 119.99838 * 180.27798 * 12 10 9 15 15 H 1.48496 * 109.47187 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47141 * 119.99952 * 14 12 10 17 17 H 1.48498 * 109.47018 * 239.99998 * 14 12 10 18 18 C 1.35688 * 126.08014 * 179.97438 * 6 5 3 19 19 C 1.53068 * 109.43972 * 119.92004 * 2 1 3 20 20 C 1.53405 * 108.29353 * 168.21303 * 19 2 1 21 21 O 1.42825 * 108.37019 * 295.25165 * 20 19 2 22 22 C 1.35842 * 117.86348 * 49.14905 * 21 20 19 23 23 C 1.39151 * 118.50002 * 162.97982 * 22 21 20 24 24 C 1.37969 * 120.21122 * 179.82165 * 23 22 21 25 25 C 1.38287 * 119.96335 * 359.97438 * 24 23 22 26 26 C 1.38105 * 119.98221 * 0.08084 * 25 24 23 27 27 C 1.38374 * 121.80821 * 342.92459 * 22 21 20 28 28 H 1.09004 * 109.47107 * 59.99648 * 1 2 3 29 29 H 1.08999 * 109.46520 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46590 * 299.99314 * 1 2 3 31 31 H 0.97002 * 120.00333 * 359.97438 * 5 3 2 32 32 H 1.07999 * 125.80726 * 359.95383 * 7 6 5 33 33 H 0.97005 * 119.99961 * 179.97438 * 13 12 10 34 34 H 1.07993 * 126.24688 * 0.02562 * 18 6 5 35 35 H 1.09005 * 109.69677 * 287.91442 * 19 2 1 36 36 H 1.08995 * 109.70109 * 48.51032 * 19 2 1 37 37 H 1.09003 * 109.68333 * 54.96940 * 20 19 2 38 38 H 1.08998 * 109.68496 * 175.53124 * 20 19 2 39 39 H 1.07990 * 119.89261 * 359.83910 * 23 22 21 40 40 H 1.08006 * 120.01941 * 180.02562 * 24 23 22 41 41 H 1.08001 * 120.00997 * 180.09875 * 25 24 23 42 42 H 1.08007 * 119.83946 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0315 1.4212 0.0000 4 8 2.7274 1.8187 0.9106 5 7 1.7067 2.2504 -1.0116 6 6 2.1750 3.5761 -1.0118 7 6 2.9864 4.1681 -0.0272 8 7 3.2195 5.4083 -0.3753 9 7 2.5614 5.6591 -1.5860 10 6 2.5610 6.8468 -2.2753 11 1 2.0214 6.9304 -3.2071 12 6 3.2504 7.9432 -1.7707 13 7 3.9063 7.8418 -0.6378 14 14 3.2436 9.5612 -2.7043 15 1 2.4376 9.4146 -3.9428 16 1 2.6519 10.6227 -1.8508 17 1 4.6363 9.9323 -3.0617 18 6 1.9256 4.5115 -1.9625 19 6 2.0395 -0.7200 1.2510 20 6 3.5443 -0.9676 1.0849 21 8 3.7345 -1.8664 -0.0087 22 6 3.0949 -1.5914 -1.1751 23 6 3.5311 -2.2222 -2.3362 24 6 2.9047 -1.9716 -3.5397 25 6 1.8396 -1.0913 -3.5938 26 6 1.4048 -0.4626 -2.4436 27 6 2.0309 -0.7087 -1.2330 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 1.1506 1.9324 -1.7399 32 1 3.3577 3.6810 0.8623 33 1 4.3877 8.6069 -0.2859 34 1 1.3323 4.3732 -2.8542 35 1 1.8641 -0.0988 2.1295 36 1 1.5207 -1.6719 1.3640 37 1 4.0508 -0.0250 0.8777 38 1 3.9467 -1.4086 1.9969 39 1 4.3623 -2.9104 -2.2951 40 1 3.2455 -2.4632 -4.4390 41 1 1.3477 -0.8958 -4.5352 42 1 0.5729 0.2249 -2.4886 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931193219.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:23 Heat of formation + Delta-G solvation = 15.829003 kcal Electronic energy + Delta-G solvation = -27882.365029 eV Core-core repulsion = 24021.676701 eV Total energy + Delta-G solvation = -3860.688328 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.50336 -41.47124 -39.99107 -38.49140 -36.28194 -35.98321 -34.93369 -32.24870 -31.65314 -31.22566 -29.93871 -29.31915 -26.94993 -25.49034 -24.82433 -23.46814 -22.91785 -22.41843 -21.32446 -20.47554 -19.34418 -18.72069 -18.21952 -17.44757 -17.42164 -17.03728 -16.52317 -16.24226 -15.90789 -15.76004 -15.26360 -15.22106 -14.89783 -14.85966 -14.77628 -14.31422 -14.03725 -13.58325 -13.50912 -13.33842 -13.18872 -12.96087 -12.92863 -12.83463 -12.76708 -12.56845 -12.04430 -12.03125 -11.84987 -11.62322 -11.35041 -11.02982 -10.86685 -10.72184 -10.11185 -9.74481 -9.14033 -8.54381 -8.47778 -6.25053 0.28778 0.47147 1.19374 1.39766 1.49529 1.58876 1.85059 2.02556 2.25955 2.33143 2.49543 2.80176 2.95486 3.08517 3.38637 3.52421 3.68453 3.81710 3.86412 4.23890 4.28634 4.31378 4.41551 4.47845 4.48750 4.51422 4.58744 4.62164 4.76046 4.81672 4.94166 4.99045 5.00328 5.05720 5.08041 5.15305 5.28136 5.36589 5.45120 5.48544 5.59296 5.87512 5.94967 6.29684 6.44346 6.68793 6.72722 7.33010 7.45615 7.66916 8.51849 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019052 B = 0.003196 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.335415 B = 8760.168856 C = 9331.269132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.023 4.023 3 C 0.508 3.492 4 O -0.569 6.569 5 N -0.611 5.611 6 C -0.045 4.045 7 C -0.059 4.059 8 N -0.310 5.310 9 N -0.166 5.166 10 C -0.354 4.354 11 H 0.142 0.858 12 C -0.006 4.006 13 N -0.825 5.825 14 Si 1.019 2.981 15 H -0.240 1.240 16 H -0.272 1.272 17 H -0.273 1.273 18 C -0.081 4.081 19 C -0.131 4.131 20 C 0.056 3.944 21 O -0.328 6.328 22 C 0.114 3.886 23 C -0.165 4.165 24 C -0.082 4.082 25 C -0.150 4.150 26 C -0.088 4.088 27 C -0.166 4.166 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.413 0.587 32 H 0.166 0.834 33 H 0.276 0.724 34 H 0.187 0.813 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.045 0.955 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.084 -19.052 -5.918 21.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.027 4.027 3 C 0.296 3.704 4 O -0.448 6.448 5 N -0.255 5.255 6 C -0.151 4.151 7 C -0.234 4.234 8 N -0.142 5.142 9 N 0.065 4.935 10 C -0.485 4.485 11 H 0.159 0.841 12 C -0.218 4.218 13 N -0.453 5.453 14 Si 0.838 3.162 15 H -0.162 1.162 16 H -0.198 1.198 17 H -0.199 1.199 18 C -0.231 4.231 19 C -0.169 4.169 20 C -0.019 4.019 21 O -0.243 6.243 22 C 0.069 3.931 23 C -0.183 4.183 24 C -0.100 4.100 25 C -0.168 4.168 26 C -0.106 4.106 27 C -0.167 4.167 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.250 0.750 32 H 0.183 0.817 33 H 0.086 0.914 34 H 0.204 0.796 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.063 0.937 38 H 0.149 0.851 39 H 0.155 0.845 40 H 0.174 0.826 41 H 0.172 0.828 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.767 -17.733 -4.758 19.568 hybrid contribution -0.238 0.166 -0.213 0.360 sum -7.006 -17.567 -4.971 19.555 Atomic orbital electron populations 1.21951 0.88956 1.04711 1.03597 1.19610 0.99334 0.88831 0.94876 1.20979 0.80343 0.87837 0.81277 1.90559 1.39526 1.77313 1.37419 1.42486 1.50602 1.07895 1.24551 1.17368 1.10985 0.86851 0.99877 1.24124 1.04303 0.93050 1.01973 1.78145 1.20986 1.15532 0.99531 1.44831 1.27637 1.07951 1.13108 1.20676 1.35136 0.85769 1.06907 0.84103 1.26882 0.93996 1.04243 0.96644 1.70409 1.24587 1.32124 1.18188 0.84535 0.78871 0.74315 0.78470 1.16235 1.19755 1.19852 1.21971 1.10211 0.87337 1.03616 1.22146 0.95781 1.01907 0.97032 1.23135 0.97058 0.93040 0.88634 1.85940 1.67907 1.50629 1.19796 1.19079 0.91521 0.96000 0.86501 1.20887 1.03014 1.04006 0.90423 1.21341 0.94688 0.96749 0.97211 1.21401 0.98306 0.98074 0.99037 1.21216 0.99303 0.98924 0.91158 1.19573 0.99040 1.02436 0.95654 0.90468 0.88880 0.91509 0.74962 0.81702 0.91432 0.79597 0.89056 0.87594 0.93657 0.85102 0.84452 0.82554 0.82847 0.83907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.89 71.98 0.57 -1.87 16 2 C -0.02 -0.58 0.55 -53.62 -0.03 -0.61 16 3 C 0.51 17.81 6.09 87.66 0.53 18.34 16 4 O -0.57 -24.58 11.53 -3.12 -0.04 -24.62 16 5 N -0.61 -21.58 5.20 -303.92 -1.58 -23.16 16 6 C -0.04 -2.09 6.90 37.73 0.26 -1.82 16 7 C -0.06 -3.29 10.85 85.42 0.93 -2.36 16 8 N -0.31 -18.92 10.40 -56.47 -0.59 -19.50 16 9 N -0.17 -9.30 3.74 -190.01 -0.71 -10.01 16 10 C -0.35 -18.80 10.25 84.01 0.86 -17.93 16 11 H 0.14 6.47 7.83 -2.91 -0.02 6.44 16 12 C -0.01 -0.32 5.50 84.95 0.47 0.15 16 13 N -0.83 -48.00 11.81 21.66 0.26 -47.75 16 14 Si 1.02 38.65 29.55 68.60 2.03 40.68 16 15 H -0.24 -8.08 7.11 99.48 0.71 -7.38 16 16 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 17 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 18 C -0.08 -3.78 11.49 83.38 0.96 -2.82 16 19 C -0.13 -3.07 4.61 30.75 0.14 -2.93 16 20 C 0.06 1.48 6.87 72.12 0.50 1.97 16 21 O -0.33 -9.11 10.27 -91.78 -0.94 -10.05 16 22 C 0.11 3.02 6.47 22.52 0.15 3.16 16 23 C -0.16 -3.65 9.94 22.43 0.22 -3.43 16 24 C -0.08 -1.43 10.04 22.22 0.22 -1.21 16 25 C -0.15 -2.54 10.04 22.25 0.22 -2.32 16 26 C -0.09 -1.73 8.08 22.30 0.18 -1.55 16 27 C -0.17 -4.04 4.68 -19.75 -0.09 -4.14 16 28 H 0.08 1.19 5.96 -2.38 -0.01 1.17 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.41 11.15 6.03 -92.71 -0.56 10.60 16 32 H 0.17 9.24 5.92 -2.91 -0.02 9.22 16 33 H 0.28 14.73 8.31 -92.70 -0.77 13.96 16 34 H 0.19 6.80 8.06 -2.91 -0.02 6.78 16 35 H 0.09 2.23 7.68 -2.38 -0.02 2.22 16 36 H 0.11 1.95 8.10 -2.39 -0.02 1.93 16 37 H 0.05 1.52 6.45 -2.39 -0.02 1.51 16 38 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.14 2.68 8.06 -2.92 -0.02 2.65 16 40 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 41 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 42 H 0.14 2.15 5.30 -2.91 -0.02 2.13 16 Total: -1.00 -77.96 342.32 5.03 -72.93 By element: Atomic # 1 Polarization: 40.32 SS G_CDS: 0.52 Total: 40.84 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 6.09 Total: -19.37 kcal Atomic # 7 Polarization: -97.80 SS G_CDS: -2.62 Total: -100.42 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.98 Total: -34.66 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -77.96 5.03 -72.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931193219.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.762 kcal (2) G-P(sol) polarization free energy of solvation -77.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds