Wall clock time and date at job start Tue Mar 31 2020 15:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31877 * 119.01796 * 2 1 4 4 C 1.32300 * 120.77333 * 179.97438 * 3 2 1 5 5 C 1.38295 * 119.14964 * 0.02562 * 4 3 2 6 6 C 1.39008 * 118.66686 * 359.97438 * 5 4 3 7 7 O 1.35516 * 120.63163 * 180.02562 * 6 5 4 8 8 N 1.31769 * 119.02470 * 180.02562 * 2 1 3 9 9 C 1.50864 * 108.44739 * 180.02562 * 5 4 3 10 10 N 1.48135 * 105.64269 * 342.66311 * 9 5 4 11 11 C 1.46897 * 110.99921 * 146.67641 * 10 9 5 12 12 C 1.50701 * 109.47168 * 170.00194 * 11 10 9 13 13 C 1.38299 * 119.93217 * 269.73195 * 12 11 10 14 14 C 1.38093 * 120.06953 * 179.72477 * 13 12 11 15 15 C 1.38883 * 119.92808 * 0.56550 * 14 13 12 16 16 O 1.35754 * 120.06438 * 179.68623 * 15 14 13 17 17 C 1.34826 * 116.99724 * 174.49160 * 16 15 14 18 18 H 1.07998 * 120.00100 * 5.04739 * 17 16 15 19 19 C 1.38654 * 119.99970 * 185.05457 * 17 16 15 20 20 N 1.31557 * 120.00012 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99959 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47303 * 60.00249 * 21 19 17 23 23 H 1.48499 * 109.46956 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47359 * 299.99968 * 21 19 17 25 25 C 1.38871 * 119.86468 * 359.70509 * 15 14 13 26 26 C 1.38101 * 119.93230 * 0.02562 * 25 15 14 27 27 C 1.48116 * 103.87932 * 27.31963 * 10 9 5 28 28 H 1.09001 * 109.47443 * 89.99908 * 1 2 3 29 29 H 1.09002 * 109.47232 * 209.99549 * 1 2 3 30 30 H 1.08998 * 109.47350 * 329.99776 * 1 2 3 31 31 H 0.96703 * 114.00076 * 89.99510 * 7 6 5 32 32 H 1.08996 * 110.20994 * 223.62677 * 9 5 4 33 33 H 1.09001 * 110.21614 * 101.70734 * 9 5 4 34 34 H 1.09002 * 109.46852 * 50.00021 * 11 10 9 35 35 H 1.09001 * 109.47162 * 290.00463 * 11 10 9 36 36 H 1.08005 * 119.96050 * 359.97425 * 13 12 11 37 37 H 1.07999 * 120.03730 * 180.26989 * 14 13 12 38 38 H 0.97002 * 120.00021 * 179.97438 * 20 19 17 39 39 H 1.08002 * 120.03853 * 179.97438 * 25 15 14 40 40 H 1.07997 * 119.96732 * 179.97438 * 26 25 15 41 41 H 1.09001 * 110.20281 * 91.72117 * 27 10 9 42 42 H 1.09008 * 110.19585 * 213.59718 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1467 1.1532 0.0000 4 6 3.4691 1.1937 0.0005 5 6 4.1794 0.0071 0.0005 6 6 3.4754 -1.1915 0.0005 7 8 4.1312 -2.3774 0.0010 8 7 2.1464 -1.1522 -0.0005 9 6 5.6526 0.3326 0.0018 10 7 5.7492 1.7486 -0.4226 11 6 6.8756 2.4206 0.2388 12 6 7.0950 3.7716 -0.3920 13 6 7.9563 3.8998 -1.4665 14 6 8.1551 5.1354 -2.0502 15 6 7.4981 6.2520 -1.5498 16 8 7.6964 7.4690 -2.1175 17 6 6.9433 8.4887 -1.6583 18 1 6.2812 8.3356 -0.8189 19 6 7.0188 9.7338 -2.2637 20 7 7.8256 9.9203 -3.2859 21 14 5.9747 11.1463 -1.6279 22 1 6.3184 11.4162 -0.2086 23 1 6.2383 12.3613 -2.4400 24 1 4.5380 10.7847 -1.7291 25 6 6.6382 6.1209 -0.4672 26 6 6.4393 4.8816 0.1087 27 6 4.4573 2.3357 0.0021 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 4.3212 -2.7214 0.8846 32 1 6.1805 -0.3088 -0.7038 33 1 6.0644 0.2107 1.0036 34 1 7.7759 1.8165 0.1263 35 1 6.6524 2.5462 1.2983 36 1 8.4708 3.0319 -1.8519 37 1 8.8244 5.2341 -2.8920 38 1 7.8781 10.7913 -3.7097 39 1 6.1262 6.9874 -0.0755 40 1 5.7710 4.7792 0.9509 41 1 4.5459 2.7556 1.0040 42 1 4.1440 3.1056 -0.7031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931318269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:52 Heat of formation + Delta-G solvation = 30.769992 kcal Electronic energy + Delta-G solvation = -26244.863426 eV Core-core repulsion = 22384.822987 eV Total energy + Delta-G solvation = -3860.040438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.92875 -39.32147 -38.48827 -38.00772 -36.48690 -33.60756 -32.83299 -32.25068 -30.55795 -30.20032 -29.09209 -28.07588 -25.86840 -25.01298 -23.60016 -22.37441 -21.99102 -21.69351 -20.40711 -19.08023 -18.35994 -18.00200 -17.01116 -16.48613 -15.92483 -15.68548 -15.01777 -14.70601 -14.58590 -14.43311 -14.34932 -14.04527 -13.65580 -13.52713 -13.41077 -13.32629 -12.91295 -12.74383 -12.65381 -12.55130 -12.31705 -12.22298 -11.84136 -11.53053 -11.27245 -11.03000 -10.81080 -10.73507 -10.67815 -10.60236 -10.44955 -9.61904 -9.60123 -9.35777 -8.85413 -8.58803 -8.19676 -7.21809 -6.46668 -4.05633 0.45972 0.61483 2.19529 2.22325 2.90654 3.11950 3.13095 3.16176 3.21141 3.27612 3.80557 3.90646 3.95516 4.18446 4.46619 4.58896 4.75903 5.00478 5.02357 5.06796 5.08478 5.17072 5.22490 5.25698 5.29539 5.35931 5.51754 5.54839 5.61303 5.66914 5.71030 5.82828 5.95721 6.18537 6.33909 6.46991 6.59255 6.66245 6.73885 6.88784 6.96064 7.03838 7.23399 7.34341 7.42109 7.74087 7.80028 7.98056 8.98782 9.68505 10.71150 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017820 B = 0.002449 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.916368 B =11429.005707 C =12622.280557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.343 3.657 3 N -0.510 5.510 4 C 0.190 3.810 5 C -0.234 4.234 6 C 0.379 3.621 7 O -0.473 6.473 8 N -0.538 5.538 9 C 0.088 3.912 10 N -0.491 5.491 11 C 0.104 3.896 12 C -0.185 4.185 13 C -0.050 4.050 14 C -0.194 4.194 15 C 0.157 3.843 16 O -0.176 6.176 17 C -0.393 4.393 18 H 0.092 0.908 19 C 0.040 3.960 20 N -0.862 5.862 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.269 1.269 25 C -0.234 4.234 26 C -0.063 4.063 27 C 0.085 3.915 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.406 0.594 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.271 0.729 39 H 0.126 0.874 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.311 -20.234 10.442 24.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.076 3.924 3 N -0.227 5.227 4 C 0.043 3.957 5 C -0.240 4.240 6 C 0.193 3.807 7 O -0.280 6.280 8 N -0.263 5.263 9 C -0.040 4.040 10 N -0.215 5.215 11 C -0.022 4.022 12 C -0.186 4.186 13 C -0.069 4.069 14 C -0.213 4.213 15 C 0.103 3.897 16 O -0.079 6.079 17 C -0.469 4.469 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.497 5.497 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.194 1.194 25 C -0.253 4.253 26 C -0.082 4.082 27 C -0.043 4.043 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.265 0.735 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.130 0.870 37 H 0.135 0.865 38 H 0.081 0.919 39 H 0.144 0.856 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.922 -19.894 8.930 23.561 hybrid contribution 0.267 0.444 1.602 1.684 sum -8.655 -19.450 10.532 23.751 Atomic orbital electron populations 1.20605 0.84897 1.04399 1.04317 1.23094 0.97948 0.81557 0.89776 1.67484 1.08891 1.30398 1.15889 1.22217 0.89635 0.95588 0.88293 1.22281 0.99773 0.94786 1.07189 1.18747 0.86437 0.84481 0.91080 1.84731 1.74557 1.34627 1.34076 1.67912 1.08984 1.31646 1.17788 1.21445 0.90064 0.91874 1.00663 1.65580 1.01619 1.00558 1.53787 1.21097 0.92919 0.93543 0.94675 1.18932 1.04894 0.92941 1.01830 1.20442 0.96553 0.95731 0.94187 1.20218 1.06279 0.90955 1.03898 1.19413 0.92371 0.86751 0.91170 1.83980 1.55324 1.12939 1.55696 1.21278 1.22102 0.87604 1.15894 0.89098 1.25291 0.97446 0.97990 0.95740 1.70028 1.35035 1.24249 1.20346 0.85789 0.79581 0.79365 0.78758 1.19511 1.20262 1.19445 1.21107 1.05570 0.98033 1.00612 1.20569 0.97391 0.92199 0.98032 1.21728 0.86426 0.94007 1.02129 0.89232 0.89421 0.89138 0.73514 0.88171 0.91669 0.89869 0.93942 0.87023 0.86529 0.91928 0.85604 0.87964 0.90179 0.86791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.31 36.01 0.37 -0.27 16 2 C 0.34 3.99 7.64 -157.14 -1.20 2.79 16 3 N -0.51 -6.66 10.34 -6.96 -0.07 -6.73 16 4 C 0.19 2.41 7.50 -82.22 -0.62 1.79 16 5 C -0.23 -2.67 6.28 -104.24 -0.65 -3.32 16 6 C 0.38 4.26 7.84 -16.78 -0.13 4.13 16 7 O -0.47 -4.13 13.58 -18.24 -0.25 -4.38 16 8 N -0.54 -6.50 10.36 -10.82 -0.11 -6.62 16 9 C 0.09 0.87 6.58 -4.21 -0.03 0.84 16 10 N -0.49 -5.97 5.43 -236.52 -1.28 -7.26 16 11 C 0.10 1.24 4.82 -4.98 -0.02 1.21 16 12 C -0.18 -2.91 5.20 -104.57 -0.54 -3.45 16 13 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 14 C -0.19 -4.01 9.99 -39.40 -0.39 -4.41 16 15 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 16 O -0.18 -4.98 9.76 0.05 0.00 -4.98 16 17 C -0.39 -10.85 9.49 30.89 0.29 -10.56 16 18 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 19 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -25.15 13.67 55.48 0.76 -24.39 16 21 Si 0.94 20.35 29.55 -169.99 -5.02 15.32 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 25 C -0.23 -4.90 9.17 -39.40 -0.36 -5.26 16 26 C -0.06 -1.08 9.15 -39.61 -0.36 -1.44 16 27 C 0.09 1.04 5.79 -4.15 -0.02 1.02 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.41 1.32 9.06 45.56 0.41 1.74 16 32 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.51 7.81 -51.93 -0.41 0.11 16 34 H 0.08 0.87 8.02 -51.93 -0.42 0.45 16 35 H 0.04 0.45 7.62 -51.93 -0.40 0.05 16 36 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 37 H 0.12 2.35 8.06 -52.49 -0.42 1.92 16 38 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.13 2.66 5.64 -52.49 -0.30 2.36 16 40 H 0.10 1.46 7.93 -52.49 -0.42 1.05 16 41 H 0.08 0.87 7.39 -51.93 -0.38 0.49 16 42 H 0.11 1.57 8.14 -51.92 -0.42 1.14 16 LS Contribution 359.40 15.07 5.42 5.42 Total: -1.00 -33.56 359.40 -9.25 -42.81 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -4.27 Total: 4.51 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -4.42 Total: -13.71 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: -0.71 Total: -44.99 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.25 Total: -9.36 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.56 -9.25 -42.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931318269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.583 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds