Wall clock time and date at job start Tue Mar 31 2020 15:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31877 * 119.01796 * 2 1 4 4 C 1.32300 * 120.77333 * 179.97438 * 3 2 1 5 5 C 1.38295 * 119.14964 * 0.02562 * 4 3 2 6 6 C 1.39008 * 118.66686 * 359.97438 * 5 4 3 7 7 O 1.35516 * 120.63163 * 180.02562 * 6 5 4 8 8 N 1.31769 * 119.02470 * 180.02562 * 2 1 3 9 9 C 1.50864 * 108.44739 * 180.02562 * 5 4 3 10 10 N 1.48135 * 105.64269 * 342.66311 * 9 5 4 11 11 C 1.46897 * 110.99921 * 146.67641 * 10 9 5 12 12 C 1.50701 * 109.47168 * 170.00194 * 11 10 9 13 13 C 1.38299 * 119.93217 * 269.73195 * 12 11 10 14 14 C 1.38093 * 120.06953 * 179.72477 * 13 12 11 15 15 C 1.38883 * 119.92808 * 0.56550 * 14 13 12 16 16 O 1.35754 * 120.06438 * 179.68623 * 15 14 13 17 17 C 1.34826 * 116.99724 * 174.49160 * 16 15 14 18 18 H 1.07998 * 120.00100 * 5.04739 * 17 16 15 19 19 C 1.38654 * 119.99970 * 185.05457 * 17 16 15 20 20 N 1.31557 * 120.00012 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99959 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47303 * 60.00249 * 21 19 17 23 23 H 1.48499 * 109.46956 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47359 * 299.99968 * 21 19 17 25 25 C 1.38871 * 119.86468 * 359.70509 * 15 14 13 26 26 C 1.38101 * 119.93230 * 0.02562 * 25 15 14 27 27 C 1.48116 * 103.87932 * 27.31963 * 10 9 5 28 28 H 1.09001 * 109.47443 * 89.99908 * 1 2 3 29 29 H 1.09002 * 109.47232 * 209.99549 * 1 2 3 30 30 H 1.08998 * 109.47350 * 329.99776 * 1 2 3 31 31 H 0.96703 * 114.00076 * 89.99510 * 7 6 5 32 32 H 1.08996 * 110.20994 * 223.62677 * 9 5 4 33 33 H 1.09001 * 110.21614 * 101.70734 * 9 5 4 34 34 H 1.09002 * 109.46852 * 50.00021 * 11 10 9 35 35 H 1.09001 * 109.47162 * 290.00463 * 11 10 9 36 36 H 1.08005 * 119.96050 * 359.97425 * 13 12 11 37 37 H 1.07999 * 120.03730 * 180.26989 * 14 13 12 38 38 H 0.97002 * 120.00021 * 179.97438 * 20 19 17 39 39 H 1.08002 * 120.03853 * 179.97438 * 25 15 14 40 40 H 1.07997 * 119.96732 * 179.97438 * 26 25 15 41 41 H 1.09001 * 110.20281 * 91.72117 * 27 10 9 42 42 H 1.09008 * 110.19585 * 213.59718 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1467 1.1532 0.0000 4 6 3.4691 1.1937 0.0005 5 6 4.1794 0.0071 0.0005 6 6 3.4754 -1.1915 0.0005 7 8 4.1312 -2.3774 0.0010 8 7 2.1464 -1.1522 -0.0005 9 6 5.6526 0.3326 0.0018 10 7 5.7492 1.7486 -0.4226 11 6 6.8756 2.4206 0.2388 12 6 7.0950 3.7716 -0.3920 13 6 7.9563 3.8998 -1.4665 14 6 8.1551 5.1354 -2.0502 15 6 7.4981 6.2520 -1.5498 16 8 7.6964 7.4690 -2.1175 17 6 6.9433 8.4887 -1.6583 18 1 6.2812 8.3356 -0.8189 19 6 7.0188 9.7338 -2.2637 20 7 7.8256 9.9203 -3.2859 21 14 5.9747 11.1463 -1.6279 22 1 6.3184 11.4162 -0.2086 23 1 6.2383 12.3613 -2.4400 24 1 4.5380 10.7847 -1.7291 25 6 6.6382 6.1209 -0.4672 26 6 6.4393 4.8816 0.1087 27 6 4.4573 2.3357 0.0021 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 4.3212 -2.7214 0.8846 32 1 6.1805 -0.3088 -0.7038 33 1 6.0644 0.2107 1.0036 34 1 7.7759 1.8165 0.1263 35 1 6.6524 2.5462 1.2983 36 1 8.4708 3.0319 -1.8519 37 1 8.8244 5.2341 -2.8920 38 1 7.8781 10.7913 -3.7097 39 1 6.1262 6.9874 -0.0755 40 1 5.7710 4.7792 0.9509 41 1 4.5459 2.7556 1.0040 42 1 4.1440 3.1056 -0.7031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931318269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:51 Heat of formation + Delta-G solvation = 3.674781 kcal Electronic energy + Delta-G solvation = -26246.038362 eV Core-core repulsion = 22384.822987 eV Total energy + Delta-G solvation = -3861.215375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.75695 -40.81646 -39.62667 -38.74633 -38.03163 -34.64198 -34.20259 -33.58203 -31.78887 -31.58152 -30.04519 -29.07350 -27.52447 -26.27961 -24.58110 -23.63196 -23.09837 -22.69931 -21.79233 -19.84683 -19.79007 -19.18677 -18.79996 -17.35963 -16.84053 -16.73529 -16.30284 -16.18695 -15.80387 -15.60469 -15.39517 -15.33521 -15.11766 -14.86283 -14.40252 -14.30567 -14.20403 -13.94288 -13.60931 -13.43203 -13.31326 -13.26558 -13.02094 -12.94415 -12.66235 -12.39542 -12.25341 -12.15431 -12.03450 -11.72182 -11.56541 -11.14118 -10.78252 -10.46534 -10.44001 -9.72937 -9.44203 -8.88471 -8.45925 -6.13939 -0.34843 -0.23188 0.65016 0.69926 1.35159 1.45782 1.51350 2.18310 2.18894 2.38680 2.43384 2.75731 3.00192 3.12387 3.28429 3.39428 3.56209 3.66236 4.02648 4.03985 4.07303 4.18696 4.26351 4.30797 4.38838 4.50462 4.62380 4.64965 4.67560 4.73283 4.74707 4.82427 4.83958 4.93142 5.11767 5.16434 5.27514 5.33775 5.50461 5.64305 5.74313 5.75062 5.84601 5.90674 6.04889 6.27658 6.46477 6.91011 6.98954 7.80956 8.77272 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017820 B = 0.002449 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.916368 B =11429.005707 C =12622.280557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.332 3.668 3 N -0.534 5.534 4 C 0.171 3.829 5 C -0.237 4.237 6 C 0.380 3.620 7 O -0.475 6.475 8 N -0.553 5.553 9 C 0.096 3.904 10 N -0.508 5.508 11 C 0.107 3.893 12 C -0.155 4.155 13 C -0.046 4.046 14 C -0.209 4.209 15 C 0.113 3.887 16 O -0.234 6.234 17 C -0.413 4.413 18 H 0.102 0.898 19 C -0.024 4.024 20 N -0.922 5.922 21 Si 1.017 2.983 22 H -0.256 1.256 23 H -0.272 1.272 24 H -0.258 1.258 25 C -0.244 4.244 26 C -0.059 4.059 27 C 0.087 3.913 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.429 0.571 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.068 0.932 36 H 0.148 0.852 37 H 0.109 0.891 38 H 0.272 0.728 39 H 0.116 0.884 40 H 0.138 0.862 41 H 0.096 0.904 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.259 -23.275 12.959 28.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.066 3.934 3 N -0.251 5.251 4 C 0.024 3.976 5 C -0.244 4.244 6 C 0.193 3.807 7 O -0.286 6.286 8 N -0.279 5.279 9 C -0.032 4.032 10 N -0.233 5.233 11 C -0.020 4.020 12 C -0.156 4.156 13 C -0.064 4.064 14 C -0.228 4.228 15 C 0.063 3.937 16 O -0.141 6.141 17 C -0.489 4.489 18 H 0.119 0.881 19 C -0.221 4.221 20 N -0.560 5.560 21 Si 0.836 3.164 22 H -0.180 1.180 23 H -0.197 1.197 24 H -0.183 1.183 25 C -0.263 4.263 26 C -0.077 4.077 27 C -0.041 4.041 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.292 0.708 32 H 0.125 0.875 33 H 0.113 0.887 34 H 0.128 0.872 35 H 0.086 0.914 36 H 0.165 0.835 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.134 0.866 40 H 0.156 0.844 41 H 0.114 0.886 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.868 -23.015 11.496 27.554 hybrid contribution 0.549 0.911 0.926 1.410 sum -9.318 -22.105 12.423 27.014 Atomic orbital electron populations 1.20736 0.82674 1.05487 1.05113 1.23752 0.99368 0.81200 0.89092 1.67518 1.09424 1.31236 1.16925 1.22368 0.89866 0.96361 0.89013 1.22415 1.00535 0.94336 1.07075 1.18901 0.86384 0.85239 0.90219 1.84688 1.74109 1.33628 1.36203 1.68009 1.09607 1.31829 1.18480 1.21473 0.89124 0.90098 1.02465 1.65434 1.01346 1.01941 1.54550 1.21155 0.94185 0.91164 0.95482 1.19501 1.01529 0.94878 0.99681 1.20870 0.96424 0.95142 0.93953 1.20476 1.06228 0.91795 1.04281 1.19982 0.94575 0.86401 0.92770 1.83942 1.57513 1.14565 1.58086 1.21773 1.22442 0.88253 1.16407 0.88109 1.26582 0.98832 1.00785 0.95910 1.70181 1.37993 1.25092 1.22770 0.84671 0.77815 0.75286 0.78602 1.18029 1.19698 1.18257 1.21218 1.05203 0.99603 1.00283 1.20948 0.97415 0.90877 0.98509 1.21662 0.86627 0.93518 1.02276 0.88428 0.87988 0.88362 0.70757 0.87462 0.88667 0.87191 0.91379 0.83465 0.87268 0.91890 0.86599 0.84400 0.88638 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.31 71.24 0.73 -0.38 16 2 C 0.33 7.24 7.64 138.73 1.06 8.30 16 3 N -0.53 -13.25 10.34 -175.92 -1.82 -15.07 16 4 C 0.17 3.98 7.50 42.60 0.32 4.30 16 5 C -0.24 -4.70 6.28 -19.61 -0.12 -4.82 16 6 C 0.38 7.56 7.84 84.71 0.66 8.22 16 7 O -0.48 -6.82 13.58 -88.18 -1.20 -8.02 16 8 N -0.55 -12.34 10.36 -300.75 -3.12 -15.45 16 9 C 0.10 1.46 6.58 85.37 0.56 2.02 16 10 N -0.51 -10.21 5.43 -902.22 -4.90 -15.11 16 11 C 0.11 1.94 4.82 85.56 0.41 2.36 16 12 C -0.15 -4.33 5.20 -19.83 -0.10 -4.43 16 13 C -0.05 -1.45 9.69 22.25 0.22 -1.23 16 14 C -0.21 -8.78 9.99 22.39 0.22 -8.56 16 15 C 0.11 5.60 6.65 22.58 0.15 5.75 16 16 O -0.23 -14.20 9.76 -22.74 -0.22 -14.42 16 17 C -0.41 -24.15 9.49 67.92 0.64 -23.51 16 18 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 19 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 20 N -0.92 -57.14 13.67 21.61 0.30 -56.84 16 21 Si 1.02 43.08 29.55 68.60 2.03 45.10 16 22 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 25 C -0.24 -10.34 9.17 22.39 0.21 -10.13 16 26 C -0.06 -1.87 9.15 22.25 0.20 -1.67 16 27 C 0.09 1.90 5.79 85.42 0.49 2.39 16 28 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.43 1.30 9.06 -74.06 -0.67 0.63 16 32 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.10 0.92 7.81 -2.39 -0.02 0.90 16 34 H 0.11 1.55 8.02 -2.39 -0.02 1.53 16 35 H 0.07 0.99 7.62 -2.39 -0.02 0.97 16 36 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 37 H 0.11 4.63 8.06 -2.91 -0.02 4.60 16 38 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.12 5.05 5.64 -2.91 -0.02 5.03 16 40 H 0.14 3.41 7.93 -2.91 -0.02 3.38 16 41 H 0.10 1.72 7.39 -2.39 -0.02 1.70 16 42 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 Total: -1.00 -79.47 359.40 -2.40 -81.87 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.41 Total: 20.26 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: 6.13 Total: -22.30 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -9.54 Total: -102.48 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -1.42 Total: -22.44 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -79.47 -2.40 -81.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931318269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.540 kcal (2) G-P(sol) polarization free energy of solvation -79.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds