Wall clock time and date at job start Tue Mar 31 2020 15:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35315 * 126.66726 * 2 1 4 4 C 1.42274 * 103.92105 * 180.08518 * 3 2 1 5 5 C 1.48334 * 126.93847 * 179.90774 * 4 3 2 6 6 O 1.21497 * 119.99713 * 359.71365 * 5 4 3 7 7 N 1.34772 * 120.00406 * 179.71258 * 5 4 3 8 8 C 1.46490 * 120.00227 * 180.02562 * 7 5 4 9 9 H 1.08998 * 110.88844 * 37.06518 * 8 7 5 10 10 C 1.54349 * 110.82559 * 273.54732 * 8 7 5 11 11 C 1.51368 * 105.25468 * 268.17112 * 10 8 7 12 12 C 1.38505 * 130.39030 * 162.78458 * 11 10 8 13 13 C 1.38101 * 120.21487 * 179.97438 * 12 11 10 14 14 C 1.38255 * 119.93640 * 0.02562 * 13 12 11 15 15 C 1.38101 * 119.93270 * 359.97438 * 14 13 12 16 16 C 1.38207 * 109.76303 * 342.76190 * 11 10 8 17 17 C 1.51372 * 109.75868 * 359.97438 * 16 11 10 18 18 H 1.09005 * 110.30436 * 136.11303 * 17 16 11 19 19 N 1.46493 * 110.30545 * 258.16911 * 17 16 11 20 20 C 1.36937 * 120.00068 * 273.54920 * 19 17 16 21 21 H 1.08004 * 119.99991 * 359.97438 * 20 19 17 22 22 C 1.38819 * 120.00320 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99549 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00154 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47151 * 60.00184 * 24 22 20 26 26 H 1.48505 * 109.46993 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47205 * 300.00152 * 24 22 20 28 28 N 1.30977 * 106.12410 * 359.65032 * 4 3 2 29 29 O 1.20911 * 111.44246 * 0.22396 * 28 4 3 30 30 H 1.09001 * 109.47523 * 180.28613 * 1 2 3 31 31 H 1.09001 * 109.47225 * 300.28775 * 1 2 3 32 32 H 1.09004 * 109.46954 * 60.28443 * 1 2 3 33 33 H 1.08002 * 128.04113 * 359.96868 * 3 2 1 34 34 H 0.96999 * 119.99476 * 0.02562 * 7 5 4 35 35 H 1.09002 * 110.30534 * 149.19604 * 10 8 7 36 36 H 1.08997 * 110.29932 * 27.14178 * 10 8 7 37 37 H 1.08004 * 119.89085 * 359.96003 * 12 11 10 38 38 H 1.07996 * 120.03561 * 179.97438 * 13 12 11 39 39 H 1.08000 * 120.03290 * 179.97438 * 14 13 12 40 40 H 1.08007 * 119.89341 * 179.97438 * 15 14 13 41 41 H 0.97005 * 120.00197 * 93.54027 * 19 17 16 42 42 H 0.97005 * 119.99648 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5353 -0.0021 5 6 4.9076 1.2840 -0.0048 6 8 4.9009 2.4990 -0.0108 7 7 6.0785 0.6167 -0.0007 8 6 7.3431 1.3562 -0.0029 9 1 7.2678 2.2566 0.6068 10 6 7.7731 1.7037 -1.4439 11 6 8.6576 0.5566 -1.8832 12 6 9.0623 0.1694 -3.1500 13 6 9.8847 -0.9282 -3.3117 14 6 10.3056 -1.6438 -2.2061 15 6 9.9031 -1.2593 -0.9423 16 6 9.0787 -0.1586 -0.7781 17 6 8.5066 0.4593 0.4798 18 1 8.1326 -0.3177 1.1466 19 7 9.5246 1.2643 1.1592 20 6 10.3862 0.6735 2.0445 21 1 10.3150 -0.3859 2.2421 22 6 11.3513 1.4362 2.6879 23 7 11.4384 2.7271 2.4467 24 14 12.5262 0.6303 3.8961 25 1 13.3072 -0.4230 3.1993 26 1 13.4526 1.6539 4.4432 27 1 11.7523 0.0196 5.0066 28 7 3.4761 -0.7657 0.0047 29 8 2.3072 -1.0750 0.0059 30 1 -0.3634 -1.0276 0.0051 31 1 -0.3634 0.5183 0.8874 32 1 -0.3633 0.5094 -0.8926 33 1 2.0302 2.1272 -0.0005 34 1 6.0838 -0.3533 0.0037 35 1 8.3326 2.6391 -1.4566 36 1 6.8997 1.7773 -2.0918 37 1 8.7335 0.7276 -4.0141 38 1 10.1982 -1.2277 -4.3008 39 1 10.9484 -2.5026 -2.3308 40 1 10.2319 -1.8191 -0.0791 41 1 9.5885 2.2159 0.9819 42 1 12.1130 3.2600 2.8960 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960239486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:14 Heat of formation + Delta-G solvation = 69.721561 kcal Electronic energy + Delta-G solvation = -26981.147159 eV Core-core repulsion = 23122.795787 eV Total energy + Delta-G solvation = -3858.351372 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.27648 -40.28275 -38.98422 -36.19943 -34.34540 -34.15732 -33.58979 -32.43636 -31.16273 -29.76916 -28.18890 -28.00016 -26.16426 -24.95517 -23.23445 -22.82988 -21.95212 -20.67863 -20.14778 -19.80895 -18.03900 -17.86819 -17.33176 -16.92497 -16.15069 -15.67141 -15.13338 -14.76972 -14.68421 -14.40077 -14.25991 -14.00068 -13.90399 -13.66143 -13.42306 -13.10194 -12.94039 -12.90716 -12.76572 -12.65641 -11.71908 -11.60830 -11.45033 -11.11227 -11.03237 -10.82941 -10.63298 -10.61813 -10.39470 -10.29777 -10.16132 -9.83974 -9.67706 -9.10081 -8.98557 -8.33419 -8.10097 -7.11916 -5.85668 -3.16306 0.95258 1.46573 1.82701 1.88130 2.68707 2.95027 3.13433 3.39931 3.44440 3.45257 3.82252 4.21754 4.28783 4.53574 4.68530 4.74096 4.87145 4.98995 5.02973 5.05947 5.24667 5.32681 5.41018 5.42742 5.48157 5.49322 5.57324 5.68860 5.72322 5.88702 5.97698 6.07879 6.14193 6.20362 6.32790 6.47713 6.59136 6.69215 6.88667 6.96713 7.21632 7.42123 7.48336 7.61247 7.82926 8.11088 8.30233 9.42405 9.92646 10.28763 11.35999 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011637 B = 0.003430 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.544550 B = 8160.226650 C = 9458.176042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.037 4.037 3 C -0.184 4.184 4 C -0.020 4.020 5 C 0.598 3.402 6 O -0.521 6.521 7 N -0.695 5.695 8 C 0.135 3.865 9 H 0.112 0.888 10 C -0.086 4.086 11 C -0.097 4.097 12 C -0.114 4.114 13 C -0.131 4.131 14 C -0.127 4.127 15 C -0.089 4.089 16 C -0.093 4.093 17 C 0.209 3.791 18 H 0.063 0.937 19 N -0.702 5.702 20 C -0.246 4.246 21 H 0.072 0.928 22 C -0.006 4.006 23 N -0.927 5.927 24 Si 0.909 3.091 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.284 1.284 28 N -0.331 5.331 29 O 0.120 5.880 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.181 0.819 34 H 0.406 0.594 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.388 0.612 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.451 -6.923 -9.157 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.100 4.100 3 C -0.207 4.207 4 C -0.179 4.179 5 C 0.381 3.619 6 O -0.395 6.395 7 N -0.345 5.345 8 C 0.030 3.970 9 H 0.129 0.871 10 C -0.124 4.124 11 C -0.098 4.098 12 C -0.132 4.132 13 C -0.150 4.150 14 C -0.145 4.145 15 C -0.108 4.108 16 C -0.097 4.097 17 C 0.097 3.903 18 H 0.081 0.919 19 N -0.342 5.342 20 C -0.376 4.376 21 H 0.090 0.910 22 C -0.203 4.203 23 N -0.574 5.574 24 Si 0.740 3.260 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.211 1.211 28 N -0.032 5.032 29 O 0.045 5.955 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.198 0.802 34 H 0.241 0.759 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.223 0.777 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.389 -7.076 -8.970 21.649 hybrid contribution 0.678 0.183 0.445 0.832 sum -17.711 -6.893 -8.524 20.829 Atomic orbital electron populations 1.20367 0.83433 1.04870 1.04382 1.24500 0.96552 0.85503 1.03476 1.22438 0.89725 1.01603 1.06918 1.23578 0.96912 0.90083 1.07323 1.16850 0.81513 0.86421 0.77150 1.90813 1.86648 1.12340 1.49687 1.45766 1.04923 1.10781 1.73065 1.22039 0.81802 0.96453 0.96662 0.87056 1.21401 0.98120 0.97096 0.95765 1.20502 0.98844 0.97032 0.93396 1.20473 0.99361 0.97591 0.95804 1.20848 0.99406 0.96474 0.98239 1.20970 1.00635 1.00212 0.92730 1.20612 0.96881 0.96512 0.96782 1.21698 0.96904 0.93841 0.97248 1.19844 0.88026 0.92424 0.90000 0.91923 1.42239 1.36056 1.07753 1.48145 1.19136 1.09190 0.93351 1.15958 0.90999 1.24768 0.99408 0.95640 1.00463 1.69654 1.36888 1.04836 1.45991 0.86245 0.80720 0.78101 0.80972 1.21121 1.21579 1.21084 1.74190 0.97162 1.15668 1.16200 1.84788 1.11149 1.33483 1.66087 0.89671 0.88910 0.88950 0.80182 0.75875 0.89094 0.91052 0.87162 0.86772 0.86670 0.86514 0.77698 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.26 10.44 36.00 0.38 0.11 16 2 C -0.04 -0.31 7.47 -35.35 -0.26 -0.57 16 3 C -0.18 -1.94 10.92 -39.07 -0.43 -2.37 16 4 C -0.02 -0.27 7.19 -82.53 -0.59 -0.86 16 5 C 0.60 9.53 7.85 -12.11 -0.09 9.44 16 6 O -0.52 -9.61 16.69 5.37 0.09 -9.52 16 7 N -0.69 -10.83 5.15 -53.09 -0.27 -11.11 16 8 C 0.14 2.38 2.95 -66.37 -0.20 2.19 16 9 H 0.11 2.16 7.63 -51.93 -0.40 1.77 16 10 C -0.09 -1.43 6.47 -26.85 -0.17 -1.60 16 11 C -0.10 -1.69 6.14 -104.21 -0.64 -2.33 16 12 C -0.11 -1.80 10.04 -39.53 -0.40 -2.20 16 13 C -0.13 -1.96 10.05 -39.63 -0.40 -2.36 16 14 C -0.13 -2.01 10.05 -39.63 -0.40 -2.41 16 15 C -0.09 -1.61 10.04 -39.54 -0.40 -2.01 16 16 C -0.09 -1.76 5.76 -104.21 -0.60 -2.36 16 17 C 0.21 4.14 3.11 -67.90 -0.21 3.93 16 18 H 0.06 1.24 8.02 -51.93 -0.42 0.83 16 19 N -0.70 -17.23 5.16 -53.39 -0.28 -17.50 16 20 C -0.25 -6.63 9.96 -15.06 -0.15 -6.78 16 21 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 22 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 23 N -0.93 -27.58 13.06 55.49 0.72 -26.85 16 24 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 28 N -0.33 -4.30 11.84 33.29 0.39 -3.91 16 29 O 0.12 1.29 11.18 17.24 0.19 1.48 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.18 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.41 5.86 8.34 -40.82 -0.34 5.52 16 35 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 36 H 0.07 1.12 8.09 -51.93 -0.42 0.70 16 37 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 38 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 40 H 0.12 2.09 8.06 -52.48 -0.42 1.67 16 41 H 0.39 10.18 7.79 -40.82 -0.32 9.86 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -32.51 366.76 -8.55 -41.06 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -5.24 Total: 14.20 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -4.66 Total: -10.46 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: 0.57 Total: -59.38 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.28 Total: -8.04 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.51 -8.55 -41.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960239486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.782 kcal (2) G-P(sol) polarization free energy of solvation -32.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds