Wall clock time and date at job start Tue Mar 31 2020 15:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35315 * 126.66726 * 2 1 4 4 C 1.42274 * 103.92105 * 180.08518 * 3 2 1 5 5 C 1.48334 * 126.93847 * 179.90774 * 4 3 2 6 6 O 1.21497 * 119.99713 * 359.71365 * 5 4 3 7 7 N 1.34772 * 120.00406 * 179.71258 * 5 4 3 8 8 C 1.46490 * 120.00227 * 180.02562 * 7 5 4 9 9 H 1.08998 * 110.88844 * 37.06518 * 8 7 5 10 10 C 1.54349 * 110.82559 * 273.54732 * 8 7 5 11 11 C 1.51368 * 105.25468 * 268.17112 * 10 8 7 12 12 C 1.38505 * 130.39030 * 162.78458 * 11 10 8 13 13 C 1.38101 * 120.21487 * 179.97438 * 12 11 10 14 14 C 1.38255 * 119.93640 * 0.02562 * 13 12 11 15 15 C 1.38101 * 119.93270 * 359.97438 * 14 13 12 16 16 C 1.38207 * 109.76303 * 342.76190 * 11 10 8 17 17 C 1.51372 * 109.75868 * 359.97438 * 16 11 10 18 18 H 1.09005 * 110.30436 * 136.11303 * 17 16 11 19 19 N 1.46493 * 110.30545 * 258.16911 * 17 16 11 20 20 C 1.36937 * 120.00068 * 273.54920 * 19 17 16 21 21 H 1.08004 * 119.99991 * 359.97438 * 20 19 17 22 22 C 1.38819 * 120.00320 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99549 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00154 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47151 * 60.00184 * 24 22 20 26 26 H 1.48505 * 109.46993 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47205 * 300.00152 * 24 22 20 28 28 N 1.30977 * 106.12410 * 359.65032 * 4 3 2 29 29 O 1.20911 * 111.44246 * 0.22396 * 28 4 3 30 30 H 1.09001 * 109.47523 * 180.28613 * 1 2 3 31 31 H 1.09001 * 109.47225 * 300.28775 * 1 2 3 32 32 H 1.09004 * 109.46954 * 60.28443 * 1 2 3 33 33 H 1.08002 * 128.04113 * 359.96868 * 3 2 1 34 34 H 0.96999 * 119.99476 * 0.02562 * 7 5 4 35 35 H 1.09002 * 110.30534 * 149.19604 * 10 8 7 36 36 H 1.08997 * 110.29932 * 27.14178 * 10 8 7 37 37 H 1.08004 * 119.89085 * 359.96003 * 12 11 10 38 38 H 1.07996 * 120.03561 * 179.97438 * 13 12 11 39 39 H 1.08000 * 120.03290 * 179.97438 * 14 13 12 40 40 H 1.08007 * 119.89341 * 179.97438 * 15 14 13 41 41 H 0.97005 * 120.00197 * 93.54027 * 19 17 16 42 42 H 0.97005 * 119.99648 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5353 -0.0021 5 6 4.9076 1.2840 -0.0048 6 8 4.9009 2.4990 -0.0108 7 7 6.0785 0.6167 -0.0007 8 6 7.3431 1.3562 -0.0029 9 1 7.2678 2.2566 0.6068 10 6 7.7731 1.7037 -1.4439 11 6 8.6576 0.5566 -1.8832 12 6 9.0623 0.1694 -3.1500 13 6 9.8847 -0.9282 -3.3117 14 6 10.3056 -1.6438 -2.2061 15 6 9.9031 -1.2593 -0.9423 16 6 9.0787 -0.1586 -0.7781 17 6 8.5066 0.4593 0.4798 18 1 8.1326 -0.3177 1.1466 19 7 9.5246 1.2643 1.1592 20 6 10.3862 0.6735 2.0445 21 1 10.3150 -0.3859 2.2421 22 6 11.3513 1.4362 2.6879 23 7 11.4384 2.7271 2.4467 24 14 12.5262 0.6303 3.8961 25 1 13.3072 -0.4230 3.1993 26 1 13.4526 1.6539 4.4432 27 1 11.7523 0.0196 5.0066 28 7 3.4761 -0.7657 0.0047 29 8 2.3072 -1.0750 0.0059 30 1 -0.3634 -1.0276 0.0051 31 1 -0.3634 0.5183 0.8874 32 1 -0.3633 0.5094 -0.8926 33 1 2.0302 2.1272 -0.0005 34 1 6.0838 -0.3533 0.0037 35 1 8.3326 2.6391 -1.4566 36 1 6.8997 1.7773 -2.0918 37 1 8.7335 0.7276 -4.0141 38 1 10.1982 -1.2277 -4.3008 39 1 10.9484 -2.5026 -2.3308 40 1 10.2319 -1.8191 -0.0791 41 1 9.5885 2.2159 0.9819 42 1 12.1130 3.2600 2.8960 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960239486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:14 Heat of formation + Delta-G solvation = 48.907635 kcal Electronic energy + Delta-G solvation = -26982.049719 eV Core-core repulsion = 23122.795787 eV Total energy + Delta-G solvation = -3859.253931 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.18070 -41.66836 -40.30667 -37.62525 -35.86057 -35.22957 -34.57369 -33.76112 -32.81052 -31.37386 -29.38709 -28.69858 -27.77587 -26.22777 -24.97513 -23.84284 -23.22765 -21.93818 -21.61955 -21.06639 -19.44392 -18.94458 -18.59708 -18.05856 -17.52426 -17.12185 -16.54717 -16.44241 -15.99331 -15.73214 -15.50013 -15.27730 -15.04307 -14.83297 -14.51816 -14.29221 -14.25039 -13.99954 -13.93983 -13.32657 -13.15931 -13.04167 -12.83894 -12.71782 -12.45443 -12.36515 -12.28994 -12.07299 -11.91133 -11.71098 -11.59725 -11.56321 -11.02696 -10.43403 -10.38386 -9.66979 -9.46356 -9.12383 -7.99114 -5.30124 -0.01045 0.50953 0.55360 0.64998 1.44524 1.47633 1.53324 1.65526 1.94450 2.06434 2.51867 2.79853 2.90845 3.29736 3.32366 3.50396 3.66323 3.91957 3.96055 4.04185 4.06990 4.13852 4.22272 4.26983 4.33832 4.38698 4.61396 4.67549 4.72729 4.80082 4.82037 4.83157 4.86607 4.89253 5.15283 5.22048 5.26959 5.29424 5.45198 5.60497 5.66481 5.84204 6.15327 6.18411 6.21140 6.79593 7.00563 7.27103 7.93682 8.20566 9.23537 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011637 B = 0.003430 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.544550 B = 8160.226650 C = 9458.176042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.012 4.012 3 C -0.201 4.201 4 C -0.046 4.046 5 C 0.598 3.402 6 O -0.552 6.552 7 N -0.689 5.689 8 C 0.146 3.854 9 H 0.087 0.913 10 C -0.077 4.077 11 C -0.106 4.106 12 C -0.117 4.117 13 C -0.122 4.122 14 C -0.127 4.127 15 C -0.111 4.111 16 C -0.117 4.117 17 C 0.209 3.791 18 H 0.057 0.943 19 N -0.716 5.716 20 C -0.241 4.241 21 H 0.077 0.923 22 C -0.068 4.068 23 N -0.966 5.966 24 Si 0.973 3.027 25 H -0.277 1.277 26 H -0.295 1.295 27 H -0.277 1.277 28 N -0.350 5.350 29 O 0.127 5.873 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.193 0.807 34 H 0.412 0.588 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.152 0.848 39 H 0.144 0.856 40 H 0.109 0.891 41 H 0.376 0.624 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.049 -8.820 -10.858 25.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.075 4.075 3 C -0.223 4.223 4 C -0.204 4.204 5 C 0.383 3.617 6 O -0.429 6.429 7 N -0.340 5.340 8 C 0.041 3.959 9 H 0.105 0.895 10 C -0.116 4.116 11 C -0.106 4.106 12 C -0.135 4.135 13 C -0.140 4.140 14 C -0.145 4.145 15 C -0.129 4.129 16 C -0.120 4.120 17 C 0.100 3.900 18 H 0.074 0.926 19 N -0.355 5.355 20 C -0.373 4.373 21 H 0.095 0.905 22 C -0.261 4.261 23 N -0.616 5.616 24 Si 0.801 3.199 25 H -0.203 1.203 26 H -0.222 1.222 27 H -0.203 1.203 28 N -0.049 5.049 29 O 0.050 5.950 30 H 0.120 0.880 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.210 0.790 34 H 0.248 0.752 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.155 0.845 38 H 0.170 0.830 39 H 0.161 0.839 40 H 0.127 0.873 41 H 0.208 0.792 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -20.009 -9.039 -10.695 24.423 hybrid contribution 1.000 0.663 0.880 1.488 sum -19.010 -8.376 -9.815 22.975 Atomic orbital electron populations 1.20687 0.79567 1.06583 1.06126 1.25294 0.98149 0.83817 1.00248 1.22678 0.88680 1.02942 1.08049 1.23383 0.96680 0.90692 1.09596 1.17164 0.82201 0.86227 0.76107 1.90784 1.87223 1.13693 1.51156 1.45641 1.04364 1.10909 1.73045 1.21680 0.82085 0.95175 0.96992 0.89502 1.21297 0.98416 0.96793 0.95052 1.20622 0.99180 0.96834 0.94007 1.20856 0.98954 0.97972 0.95749 1.21315 0.97752 0.95255 0.99688 1.21315 1.00348 1.00958 0.91849 1.20774 0.97473 0.96700 0.97988 1.21490 0.98458 0.95288 0.96746 1.19902 0.87678 0.92074 0.90391 0.92557 1.42327 1.36748 1.07578 1.48844 1.19484 1.08790 0.93523 1.15454 0.90510 1.25555 1.01547 0.96203 1.02794 1.69815 1.37863 1.06206 1.47668 0.85233 0.78605 0.77063 0.78985 1.20303 1.22167 1.20281 1.74186 0.98463 1.15379 1.16911 1.84757 1.10727 1.34272 1.65274 0.87999 0.87117 0.86927 0.78981 0.75172 0.89821 0.89910 0.84530 0.82995 0.83859 0.87284 0.79160 0.93880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.44 71.23 0.74 0.49 16 2 C -0.01 -0.17 7.47 25.01 0.19 0.01 16 3 C -0.20 -4.02 10.92 22.60 0.25 -3.77 16 4 C -0.05 -1.25 7.19 42.96 0.31 -0.94 16 5 C 0.60 19.74 7.85 86.93 0.68 20.42 16 6 O -0.55 -21.20 16.69 -3.71 -0.06 -21.27 16 7 N -0.69 -22.36 5.15 -440.17 -2.26 -24.63 16 8 C 0.15 5.42 2.95 46.00 0.14 5.55 16 9 H 0.09 3.64 7.63 -2.39 -0.02 3.63 16 10 C -0.08 -2.64 6.47 30.52 0.20 -2.45 16 11 C -0.11 -3.64 6.14 -19.60 -0.12 -3.76 16 12 C -0.12 -3.42 10.04 22.30 0.22 -3.19 16 13 C -0.12 -3.23 10.05 22.24 0.22 -3.01 16 14 C -0.13 -3.70 10.05 22.24 0.22 -3.48 16 15 C -0.11 -3.97 10.04 22.30 0.22 -3.75 16 16 C -0.12 -4.47 5.76 -19.60 -0.11 -4.58 16 17 C 0.21 8.67 3.11 45.01 0.14 8.81 16 18 H 0.06 2.35 8.02 -2.38 -0.02 2.33 16 19 N -0.72 -36.70 5.16 -322.84 -1.66 -38.37 16 20 C -0.24 -13.38 9.96 84.04 0.84 -12.55 16 21 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 22 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 23 N -0.97 -59.49 13.06 21.65 0.28 -59.21 16 24 Si 0.97 46.35 29.55 68.60 2.03 48.37 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 26 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 27 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 28 N -0.35 -8.95 11.84 -49.51 -0.59 -9.54 16 29 O 0.13 2.53 11.18 71.85 0.80 3.33 16 30 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.11 0.06 8.14 -2.38 -0.02 0.04 16 33 H 0.19 3.23 8.06 -2.91 -0.02 3.21 16 34 H 0.41 12.35 8.34 -92.71 -0.77 11.57 16 35 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 36 H 0.08 2.59 8.09 -2.39 -0.02 2.58 16 37 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 38 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 39 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 40 H 0.11 3.96 8.06 -2.91 -0.02 3.94 16 41 H 0.38 20.82 7.79 -92.70 -0.72 20.09 16 42 H 0.25 15.13 8.31 -92.70 -0.77 14.36 16 Total: -1.00 -72.92 366.76 2.72 -70.20 By element: Atomic # 1 Polarization: 41.18 SS G_CDS: -0.42 Total: 40.76 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 4.61 Total: -9.65 kcal Atomic # 7 Polarization: -127.51 SS G_CDS: -4.23 Total: -131.74 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.74 Total: -17.94 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.37 kcal Total: -72.92 2.72 -70.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960239486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.105 kcal (2) G-P(sol) polarization free energy of solvation -72.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds