Wall clock time and date at job start Tue Mar 31 2020 15:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41262 * 126.70152 * 2 1 4 4 C 1.36827 * 103.84075 * 180.09795 * 3 2 1 5 5 C 1.47515 * 126.94201 * 179.97438 * 4 3 2 6 6 O 1.21592 * 119.99727 * 359.70839 * 5 4 3 7 7 N 1.34772 * 120.00362 * 179.70931 * 5 4 3 8 8 C 1.46490 * 120.00227 * 179.97438 * 7 5 4 9 9 H 1.08998 * 110.88844 * 37.06518 * 8 7 5 10 10 C 1.54349 * 110.82559 * 273.54732 * 8 7 5 11 11 C 1.51368 * 105.25468 * 268.17112 * 10 8 7 12 12 C 1.38505 * 130.39030 * 162.78458 * 11 10 8 13 13 C 1.38101 * 120.21487 * 179.97438 * 12 11 10 14 14 C 1.38255 * 119.93640 * 0.02562 * 13 12 11 15 15 C 1.38101 * 119.93270 * 359.97438 * 14 13 12 16 16 C 1.38207 * 109.76303 * 342.76190 * 11 10 8 17 17 C 1.51372 * 109.75868 * 359.97438 * 16 11 10 18 18 H 1.09005 * 110.30436 * 136.11303 * 17 16 11 19 19 N 1.46493 * 110.30545 * 258.16911 * 17 16 11 20 20 C 1.36937 * 120.00068 * 273.54920 * 19 17 16 21 21 H 1.08004 * 119.99991 * 359.97438 * 20 19 17 22 22 C 1.38819 * 120.00320 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99549 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00154 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47100 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.46957 * 120.00125 * 24 22 20 27 27 H 1.48497 * 109.47034 * 239.99814 * 24 22 20 28 28 O 1.34636 * 106.11501 * 359.66841 * 4 3 2 29 29 N 1.20883 * 111.46791 * 0.22547 * 28 4 3 30 30 H 1.09000 * 109.47368 * 270.26049 * 1 2 3 31 31 H 1.09001 * 109.47311 * 30.25884 * 1 2 3 32 32 H 1.08999 * 109.47143 * 150.26291 * 1 2 3 33 33 H 1.07997 * 128.08410 * 359.97438 * 3 2 1 34 34 H 0.96999 * 119.99476 * 0.02562 * 7 5 4 35 35 H 1.09002 * 110.30534 * 149.19604 * 10 8 7 36 36 H 1.08997 * 110.29932 * 27.14178 * 10 8 7 37 37 H 1.08004 * 119.89085 * 359.96003 * 12 11 10 38 38 H 1.07996 * 120.03561 * 179.97438 * 13 12 11 39 39 H 1.08000 * 120.03290 * 179.97438 * 14 13 12 40 40 H 1.08007 * 119.89341 * 179.97438 * 15 14 13 41 41 H 0.97005 * 120.00197 * 93.54027 * 19 17 16 42 42 H 0.97005 * 119.99648 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6121 0.6010 -0.0023 5 6 4.8871 1.3430 -0.0038 6 8 4.8828 2.5589 -0.0084 7 7 6.0566 0.6732 -0.0001 8 6 7.3227 1.4101 -0.0022 9 1 7.2493 2.3104 0.6078 10 6 7.7532 1.7573 -1.4432 11 6 8.6352 0.6085 -1.8830 12 6 9.0390 0.2210 -3.1500 13 6 9.8591 -0.8782 -3.3122 14 6 10.2786 -1.5952 -2.2070 15 6 9.8771 -1.2104 -0.9429 16 6 9.0550 -0.1080 -0.7782 17 6 8.4843 0.5107 0.4800 18 1 8.1088 -0.2658 1.1465 19 7 9.5041 1.3133 1.1595 20 6 10.3647 0.7204 2.0445 21 1 10.2912 -0.3390 2.2417 22 6 11.3314 1.4808 2.6881 23 7 11.4212 2.7716 2.4473 24 14 12.5048 0.6720 3.8958 25 1 12.1973 -0.7777 3.9893 26 1 13.9016 0.8529 3.4253 27 1 12.3479 1.2982 5.2331 28 8 3.4539 -0.7360 0.0041 29 7 2.2848 -1.0432 0.0052 30 1 -0.3634 0.0047 1.0276 31 1 -0.3634 0.8876 -0.5178 32 1 -0.3633 -0.8923 -0.5097 33 1 2.0679 2.1747 -0.0004 34 1 6.0599 -0.2967 0.0032 35 1 8.3146 2.6915 -1.4555 36 1 6.8798 1.8330 -2.0909 37 1 8.7111 0.7802 -4.0139 38 1 10.1718 -1.1781 -4.3014 39 1 10.9196 -2.4553 -2.3321 40 1 10.2049 -1.7711 -0.0800 41 1 9.5700 2.2648 0.9826 42 1 12.0970 3.3030 2.8968 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960248524.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:14 Heat of formation + Delta-G solvation = 69.600208 kcal Electronic energy + Delta-G solvation = -27023.355554 eV Core-core repulsion = 23164.998920 eV Total energy + Delta-G solvation = -3858.356634 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.21128 -40.35019 -39.06466 -36.26880 -35.16803 -34.11633 -32.89821 -31.96863 -31.18262 -29.78929 -29.01210 -27.99643 -26.17583 -24.52595 -23.23858 -22.95332 -21.95000 -20.69803 -20.20336 -19.93930 -18.48175 -17.99040 -17.46610 -16.33770 -16.24356 -15.77878 -15.17724 -14.86681 -14.70671 -14.44135 -14.21856 -14.02083 -13.71226 -13.49442 -13.42361 -13.14620 -13.09071 -12.93720 -12.90005 -12.68441 -11.71277 -11.61343 -11.48353 -11.13350 -11.06163 -10.87220 -10.64726 -10.41769 -10.41562 -10.36391 -10.12738 -9.93451 -9.87178 -9.17000 -9.03852 -8.35396 -8.12449 -7.13908 -5.87897 -3.18502 0.62887 1.79514 1.80713 1.86157 2.44596 2.89981 3.10511 3.38030 3.43810 3.45937 3.79842 4.19405 4.24371 4.51559 4.65704 4.75812 4.82130 4.99957 5.06951 5.11873 5.30018 5.30525 5.39520 5.41615 5.45394 5.46533 5.54465 5.67657 5.73974 5.86537 5.94904 6.04351 6.07852 6.17053 6.29602 6.44752 6.54847 6.63709 6.86719 6.94892 7.18894 7.29706 7.46070 7.60613 7.83338 7.96816 8.27922 9.40461 9.90453 10.26150 11.33821 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011637 B = 0.003454 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.518588 B = 8105.048277 C = 9394.691528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.008 3.992 3 C -0.155 4.155 4 C -0.075 4.075 5 C 0.604 3.396 6 O -0.510 6.510 7 N -0.694 5.694 8 C 0.135 3.865 9 H 0.113 0.887 10 C -0.086 4.086 11 C -0.097 4.097 12 C -0.114 4.114 13 C -0.131 4.131 14 C -0.127 4.127 15 C -0.089 4.089 16 C -0.094 4.094 17 C 0.208 3.792 18 H 0.065 0.935 19 N -0.703 5.703 20 C -0.244 4.244 21 H 0.074 0.926 22 C -0.006 4.006 23 N -0.926 5.926 24 Si 0.908 3.092 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.290 1.290 28 O 0.117 5.883 29 N -0.347 5.347 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.183 0.817 34 H 0.407 0.593 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.388 0.612 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.758 -6.016 -9.178 20.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.150 4.150 3 C -0.178 4.178 4 C -0.141 4.141 5 C 0.387 3.613 6 O -0.385 6.385 7 N -0.344 5.344 8 C 0.030 3.970 9 H 0.131 0.869 10 C -0.124 4.124 11 C -0.098 4.098 12 C -0.132 4.132 13 C -0.149 4.149 14 C -0.145 4.145 15 C -0.108 4.108 16 C -0.097 4.097 17 C 0.097 3.903 18 H 0.082 0.918 19 N -0.342 5.342 20 C -0.375 4.375 21 H 0.091 0.909 22 C -0.203 4.203 23 N -0.573 5.573 24 Si 0.739 3.261 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.217 1.217 28 O 0.045 5.955 29 N -0.049 5.049 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.201 0.799 34 H 0.243 0.757 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.223 0.777 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.860 -6.508 -8.992 20.186 hybrid contribution 0.918 0.254 0.444 1.051 sum -15.942 -6.254 -8.548 19.140 Atomic orbital electron populations 1.20201 0.85306 1.04069 1.03705 1.23661 0.99383 0.88376 1.03542 1.22862 0.89934 1.01742 1.03218 1.24353 0.97496 0.83905 1.08332 1.16504 0.80989 0.86243 0.77607 1.90894 1.85944 1.11692 1.49993 1.45812 1.05018 1.10863 1.72743 1.22077 0.81610 0.96534 0.96792 0.86890 1.21403 0.98217 0.97133 0.95651 1.20492 0.98930 0.97013 0.93386 1.20474 0.99349 0.97550 0.95823 1.20853 0.99394 0.96450 0.98252 1.20975 1.00610 1.00196 0.92744 1.20613 0.96872 0.96507 0.96768 1.21695 0.96979 0.93847 0.97221 1.19849 0.88011 0.92427 0.90026 0.91753 1.42258 1.35996 1.07818 1.48153 1.19221 1.09059 0.93416 1.15820 0.90852 1.24772 0.99419 0.95649 1.00474 1.69671 1.36742 1.04919 1.45956 0.86108 0.80837 0.78417 0.80737 1.20402 1.21758 1.21720 1.84986 1.21412 1.22214 1.66917 1.73737 0.89288 1.24354 1.17498 0.89877 0.89697 0.90315 0.79918 0.75736 0.89052 0.90941 0.87158 0.86793 0.86687 0.86493 0.77698 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.47 36.01 0.38 -0.09 16 2 C 0.01 0.08 7.31 -82.16 -0.60 -0.52 16 3 C -0.16 -1.63 10.92 -38.94 -0.43 -2.05 16 4 C -0.07 -0.91 7.29 -36.31 -0.26 -1.17 16 5 C 0.60 8.43 7.82 -12.48 -0.10 8.33 16 6 O -0.51 -8.52 16.65 5.28 0.09 -8.43 16 7 N -0.69 -9.38 5.14 -53.35 -0.27 -9.65 16 8 C 0.13 2.16 2.95 -66.37 -0.20 1.97 16 9 H 0.11 2.02 7.63 -51.93 -0.40 1.63 16 10 C -0.09 -1.32 6.47 -26.85 -0.17 -1.50 16 11 C -0.10 -1.59 6.14 -104.21 -0.64 -2.23 16 12 C -0.11 -1.70 10.04 -39.53 -0.40 -2.10 16 13 C -0.13 -1.87 10.05 -39.63 -0.40 -2.27 16 14 C -0.13 -1.92 10.05 -39.63 -0.40 -2.32 16 15 C -0.09 -1.53 10.04 -39.54 -0.40 -1.93 16 16 C -0.09 -1.67 5.76 -104.21 -0.60 -2.27 16 17 C 0.21 3.87 3.11 -67.90 -0.21 3.66 16 18 H 0.06 1.18 8.02 -51.93 -0.42 0.76 16 19 N -0.70 -16.56 5.16 -53.39 -0.28 -16.83 16 20 C -0.24 -6.41 9.96 -15.06 -0.15 -6.56 16 21 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 22 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 23 N -0.93 -27.04 13.06 55.49 0.72 -26.32 16 24 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 O 0.12 1.43 11.04 15.57 0.17 1.60 16 29 N -0.35 -4.22 12.04 33.52 0.40 -3.81 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.41 4.78 8.41 -40.82 -0.34 4.44 16 35 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 37 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 38 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 39 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 40 H 0.12 2.00 8.06 -52.48 -0.42 1.57 16 41 H 0.39 9.82 7.79 -40.82 -0.32 9.50 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 366.78 15.07 5.53 5.53 Total: -1.00 -31.25 366.78 -8.57 -39.82 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -5.25 Total: 12.70 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -4.67 Total: -11.31 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.58 Total: -56.62 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: 0.26 Total: -6.83 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.25 -8.57 -39.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960248524.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.421 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds