Wall clock time and date at job start Tue Mar 31 2020 15:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41262 * 126.70152 * 2 1 4 4 C 1.36827 * 103.84075 * 180.09795 * 3 2 1 5 5 C 1.47515 * 126.94201 * 179.97438 * 4 3 2 6 6 O 1.21592 * 119.99727 * 359.70839 * 5 4 3 7 7 N 1.34772 * 120.00362 * 179.70931 * 5 4 3 8 8 C 1.46490 * 120.00227 * 179.97438 * 7 5 4 9 9 H 1.08998 * 110.88844 * 37.06518 * 8 7 5 10 10 C 1.54349 * 110.82559 * 273.54732 * 8 7 5 11 11 C 1.51368 * 105.25468 * 268.17112 * 10 8 7 12 12 C 1.38505 * 130.39030 * 162.78458 * 11 10 8 13 13 C 1.38101 * 120.21487 * 179.97438 * 12 11 10 14 14 C 1.38255 * 119.93640 * 0.02562 * 13 12 11 15 15 C 1.38101 * 119.93270 * 359.97438 * 14 13 12 16 16 C 1.38207 * 109.76303 * 342.76190 * 11 10 8 17 17 C 1.51372 * 109.75868 * 359.97438 * 16 11 10 18 18 H 1.09005 * 110.30436 * 136.11303 * 17 16 11 19 19 N 1.46493 * 110.30545 * 258.16911 * 17 16 11 20 20 C 1.36937 * 120.00068 * 273.54920 * 19 17 16 21 21 H 1.08004 * 119.99991 * 359.97438 * 20 19 17 22 22 C 1.38819 * 120.00320 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99549 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00154 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47100 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.46957 * 120.00125 * 24 22 20 27 27 H 1.48497 * 109.47034 * 239.99814 * 24 22 20 28 28 O 1.34636 * 106.11501 * 359.66841 * 4 3 2 29 29 N 1.20883 * 111.46791 * 0.22547 * 28 4 3 30 30 H 1.09000 * 109.47368 * 270.26049 * 1 2 3 31 31 H 1.09001 * 109.47311 * 30.25884 * 1 2 3 32 32 H 1.08999 * 109.47143 * 150.26291 * 1 2 3 33 33 H 1.07997 * 128.08410 * 359.97438 * 3 2 1 34 34 H 0.96999 * 119.99476 * 0.02562 * 7 5 4 35 35 H 1.09002 * 110.30534 * 149.19604 * 10 8 7 36 36 H 1.08997 * 110.29932 * 27.14178 * 10 8 7 37 37 H 1.08004 * 119.89085 * 359.96003 * 12 11 10 38 38 H 1.07996 * 120.03561 * 179.97438 * 13 12 11 39 39 H 1.08000 * 120.03290 * 179.97438 * 14 13 12 40 40 H 1.08007 * 119.89341 * 179.97438 * 15 14 13 41 41 H 0.97005 * 120.00197 * 93.54027 * 19 17 16 42 42 H 0.97005 * 119.99648 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6121 0.6010 -0.0023 5 6 4.8871 1.3430 -0.0038 6 8 4.8828 2.5589 -0.0084 7 7 6.0566 0.6732 -0.0001 8 6 7.3227 1.4101 -0.0022 9 1 7.2493 2.3104 0.6078 10 6 7.7532 1.7573 -1.4432 11 6 8.6352 0.6085 -1.8830 12 6 9.0390 0.2210 -3.1500 13 6 9.8591 -0.8782 -3.3122 14 6 10.2786 -1.5952 -2.2070 15 6 9.8771 -1.2104 -0.9429 16 6 9.0550 -0.1080 -0.7782 17 6 8.4843 0.5107 0.4800 18 1 8.1088 -0.2658 1.1465 19 7 9.5041 1.3133 1.1595 20 6 10.3647 0.7204 2.0445 21 1 10.2912 -0.3390 2.2417 22 6 11.3314 1.4808 2.6881 23 7 11.4212 2.7716 2.4473 24 14 12.5048 0.6720 3.8958 25 1 12.1973 -0.7777 3.9893 26 1 13.9016 0.8529 3.4253 27 1 12.3479 1.2982 5.2331 28 8 3.4539 -0.7360 0.0041 29 7 2.2848 -1.0432 0.0052 30 1 -0.3634 0.0047 1.0276 31 1 -0.3634 0.8876 -0.5178 32 1 -0.3633 -0.8923 -0.5097 33 1 2.0679 2.1747 -0.0004 34 1 6.0599 -0.2967 0.0032 35 1 8.3146 2.6915 -1.4555 36 1 6.8798 1.8330 -2.0909 37 1 8.7111 0.7802 -4.0139 38 1 10.1718 -1.1781 -4.3014 39 1 10.9196 -2.4553 -2.3321 40 1 10.2049 -1.7711 -0.0800 41 1 9.5700 2.2648 0.9826 42 1 12.0970 3.3030 2.8968 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960248524.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:13 Heat of formation + Delta-G solvation = 50.253693 kcal Electronic energy + Delta-G solvation = -27024.194482 eV Core-core repulsion = 23164.998920 eV Total energy + Delta-G solvation = -3859.195562 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -46.07796 -41.62547 -40.28503 -37.59236 -36.05472 -35.69679 -34.22956 -33.02376 -32.71114 -31.32230 -29.63215 -29.24199 -27.71455 -25.83186 -24.76071 -23.95815 -23.15887 -21.86613 -21.56189 -21.06725 -19.55708 -19.24814 -18.88264 -17.62738 -17.27023 -17.10754 -16.51660 -16.37670 -16.01448 -15.69510 -15.46334 -15.24052 -14.98902 -14.76563 -14.29559 -14.24088 -14.20263 -14.10520 -13.94429 -13.67510 -13.11687 -13.00397 -12.84856 -12.67775 -12.41642 -12.30289 -12.19755 -12.00091 -11.85824 -11.66131 -11.55284 -11.13289 -11.01006 -10.88247 -10.35375 -9.61705 -9.40904 -9.07549 -7.96059 -5.26061 -0.33273 0.56271 0.60625 0.98999 1.41573 1.47749 1.48287 1.57556 1.81504 2.04744 2.55304 2.95787 3.07367 3.33321 3.36654 3.41585 3.72551 3.82800 3.96214 4.03493 4.10421 4.17684 4.27219 4.31587 4.35682 4.45652 4.67065 4.70283 4.73732 4.74845 4.79425 4.81400 4.88118 4.95294 5.19824 5.20915 5.26395 5.34555 5.50511 5.65822 5.71852 5.89378 6.17040 6.22319 6.25673 6.79783 7.00017 7.31246 7.98931 8.24458 9.26947 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011637 B = 0.003454 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.518588 B = 8105.048277 C = 9394.691528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.015 3.985 3 C -0.145 4.145 4 C -0.090 4.090 5 C 0.610 3.390 6 O -0.540 6.540 7 N -0.686 5.686 8 C 0.147 3.853 9 H 0.091 0.909 10 C -0.079 4.079 11 C -0.104 4.104 12 C -0.118 4.118 13 C -0.124 4.124 14 C -0.129 4.129 15 C -0.110 4.110 16 C -0.116 4.116 17 C 0.208 3.792 18 H 0.062 0.938 19 N -0.717 5.717 20 C -0.234 4.234 21 H 0.079 0.921 22 C -0.069 4.069 23 N -0.966 5.966 24 Si 0.969 3.031 25 H -0.264 1.264 26 H -0.296 1.296 27 H -0.295 1.295 28 O 0.106 5.894 29 N -0.368 5.368 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.202 0.798 34 H 0.417 0.583 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.136 0.864 38 H 0.149 0.851 39 H 0.141 0.859 40 H 0.109 0.891 41 H 0.376 0.624 42 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.169 -7.415 -10.841 22.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.143 4.143 3 C -0.167 4.167 4 C -0.156 4.156 5 C 0.394 3.606 6 O -0.418 6.418 7 N -0.337 5.337 8 C 0.042 3.958 9 H 0.109 0.891 10 C -0.117 4.117 11 C -0.105 4.105 12 C -0.136 4.136 13 C -0.142 4.142 14 C -0.146 4.146 15 C -0.129 4.129 16 C -0.119 4.119 17 C 0.098 3.902 18 H 0.080 0.920 19 N -0.355 5.355 20 C -0.366 4.366 21 H 0.096 0.904 22 C -0.262 4.262 23 N -0.616 5.616 24 Si 0.798 3.202 25 H -0.188 1.188 26 H -0.223 1.223 27 H -0.222 1.222 28 O 0.036 5.964 29 N -0.072 5.072 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.102 0.898 33 H 0.220 0.780 34 H 0.254 0.746 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.154 0.846 38 H 0.167 0.833 39 H 0.159 0.841 40 H 0.127 0.873 41 H 0.209 0.791 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.296 -7.982 -10.681 22.639 hybrid contribution 1.213 0.600 0.862 1.604 sum -17.083 -7.382 -9.819 21.042 Atomic orbital electron populations 1.20423 0.82463 1.05484 1.04996 1.24281 1.01019 0.87418 1.01537 1.23226 0.89251 1.02841 1.01398 1.24046 0.97055 0.84295 1.10163 1.16615 0.81409 0.85922 0.76650 1.90877 1.86481 1.12986 1.51434 1.45645 1.04242 1.11196 1.72614 1.21687 0.81895 0.95282 0.96968 0.89101 1.21319 0.98572 0.96630 0.95147 1.20630 0.99179 0.96833 0.93858 1.20847 0.98942 0.97873 0.95891 1.21297 0.97907 0.95391 0.99585 1.21297 1.00417 1.00942 0.91981 1.20768 0.97496 0.96773 0.97844 1.21503 0.98397 0.95157 0.96849 1.19942 0.87667 0.92213 0.90371 0.91968 1.42356 1.36719 1.07683 1.48781 1.19554 1.08453 0.93531 1.15057 0.90356 1.25512 1.01611 0.96213 1.02868 1.69819 1.37777 1.06253 1.47727 0.85140 0.78457 0.78249 0.78327 1.18811 1.22324 1.22193 1.84974 1.21741 1.21999 1.67673 1.73736 0.89463 1.25353 1.18656 0.88517 0.87409 0.89792 0.78049 0.74644 0.89880 0.89480 0.84603 0.83303 0.84133 0.87288 0.79141 0.94005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.47 71.24 0.75 0.02 16 2 C 0.02 0.28 7.31 43.56 0.32 0.60 16 3 C -0.15 -2.81 10.92 22.68 0.25 -2.56 16 4 C -0.09 -2.12 7.29 24.39 0.18 -1.94 16 5 C 0.61 17.04 7.82 86.69 0.68 17.72 16 6 O -0.54 -18.20 16.65 -4.00 -0.07 -18.26 16 7 N -0.69 -18.76 5.14 -440.95 -2.27 -21.03 16 8 C 0.15 4.87 2.95 46.00 0.14 5.00 16 9 H 0.09 3.43 7.63 -2.39 -0.02 3.42 16 10 C -0.08 -2.42 6.47 30.52 0.20 -2.22 16 11 C -0.10 -3.32 6.14 -19.60 -0.12 -3.44 16 12 C -0.12 -3.20 10.04 22.30 0.22 -2.98 16 13 C -0.12 -3.11 10.05 22.24 0.22 -2.89 16 14 C -0.13 -3.58 10.05 22.24 0.22 -3.35 16 15 C -0.11 -3.73 10.04 22.30 0.22 -3.51 16 16 C -0.12 -4.13 5.76 -19.60 -0.11 -4.24 16 17 C 0.21 7.93 3.11 45.01 0.14 8.07 16 18 H 0.06 2.35 8.02 -2.38 -0.02 2.33 16 19 N -0.72 -34.93 5.16 -322.84 -1.66 -36.60 16 20 C -0.23 -12.55 9.96 84.04 0.84 -11.71 16 21 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 22 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 23 N -0.97 -58.28 13.06 21.65 0.28 -58.00 16 24 Si 0.97 45.51 29.55 68.60 2.03 47.53 16 25 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 26 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 27 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 28 O 0.11 2.53 11.04 65.89 0.73 3.26 16 29 N -0.37 -8.51 12.04 -48.87 -0.59 -9.10 16 30 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.20 3.02 8.06 -2.91 -0.02 2.99 16 34 H 0.42 9.86 8.41 -92.71 -0.78 9.08 16 35 H 0.08 2.69 8.14 -2.39 -0.02 2.68 16 36 H 0.09 2.40 8.09 -2.39 -0.02 2.38 16 37 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 38 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 39 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 40 H 0.11 3.75 8.06 -2.91 -0.02 3.73 16 41 H 0.38 19.92 7.79 -92.70 -0.72 19.19 16 42 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 Total: -1.00 -68.61 366.78 2.63 -65.98 By element: Atomic # 1 Polarization: 37.52 SS G_CDS: -0.43 Total: 37.09 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 4.61 Total: -10.88 kcal Atomic # 7 Polarization: -120.49 SS G_CDS: -4.24 Total: -124.73 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.66 Total: -15.00 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -68.61 2.63 -65.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960248524.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.238 kcal (2) G-P(sol) polarization free energy of solvation -68.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds