Wall clock time and date at job start Tue Mar 31 2020 15:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33686 * 126.27331 * 2 1 4 4 C 1.30612 * 108.99470 * 180.25767 * 3 2 1 5 5 O 1.33670 * 109.15603 * 359.76813 * 4 3 2 6 6 C 1.35342 * 107.68138 * 359.97438 * 5 4 3 7 7 C 1.46720 * 126.64399 * 179.97438 * 6 5 4 8 8 O 1.21677 * 120.00178 * 180.02562 * 7 6 5 9 9 N 1.34771 * 119.99731 * 0.03202 * 7 6 5 10 10 C 1.46507 * 119.99915 * 179.97438 * 9 7 6 11 11 H 1.08991 * 110.72959 * 31.59285 * 10 9 7 12 12 C 1.54344 * 110.82113 * 267.96523 * 10 9 7 13 13 C 1.51373 * 105.17334 * 268.12159 * 12 10 9 14 14 C 1.38499 * 130.39525 * 162.79321 * 13 12 10 15 15 C 1.38101 * 120.21728 * 180.02562 * 14 13 12 16 16 C 1.38253 * 119.93411 * 359.96069 * 15 14 13 17 17 C 1.38104 * 119.93275 * 0.02562 * 16 15 14 18 18 C 1.38214 * 109.75441 * 342.81647 * 13 12 10 19 19 C 1.51365 * 109.76278 * 359.97438 * 18 13 12 20 20 H 1.09003 * 110.38835 * 136.16436 * 19 18 13 21 21 N 1.46506 * 110.30005 * 258.26829 * 19 18 13 22 22 C 1.36939 * 120.00073 * 270.46984 * 21 19 18 23 23 H 1.08004 * 119.99859 * 0.02562 * 22 21 19 24 24 C 1.38805 * 119.99849 * 180.02562 * 22 21 19 25 25 N 1.31622 * 120.00455 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00168 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46615 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47374 * 119.99782 * 26 24 22 29 29 H 1.48495 * 109.47187 * 240.00172 * 26 24 22 30 30 H 1.08999 * 109.46944 * 270.13718 * 1 2 3 31 31 H 1.09004 * 109.47150 * 30.13369 * 1 2 3 32 32 H 1.08996 * 109.47433 * 150.13791 * 1 2 3 33 33 H 1.08004 * 125.42413 * 179.74807 * 4 3 2 34 34 H 0.97001 * 120.00599 * 359.97438 * 9 7 6 35 35 H 1.08996 * 110.30461 * 27.04571 * 12 10 9 36 36 H 1.09000 * 110.30234 * 149.10173 * 12 10 9 37 37 H 1.08006 * 119.89070 * 0.03324 * 14 13 12 38 38 H 1.07993 * 120.03244 * 179.97438 * 15 14 13 39 39 H 1.08000 * 120.03277 * 180.02562 * 16 15 14 40 40 H 1.08006 * 119.89046 * 179.97438 * 17 16 15 41 41 H 0.97005 * 119.99811 * 90.74777 * 21 19 18 42 42 H 0.97000 * 120.00679 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5451 0.6899 -0.0056 5 8 3.5889 -0.6461 -0.0042 6 6 2.3136 -1.0992 0.0031 7 6 1.8826 -2.5017 0.0066 8 8 0.6966 -2.7737 0.0128 9 7 2.8003 -3.4886 0.0030 10 6 2.3700 -4.8891 0.0071 11 1 1.4239 -5.0035 -0.5219 12 6 2.2653 -5.4267 1.4500 13 6 3.6192 -6.0361 1.7450 14 6 4.2065 -6.3764 2.9522 15 6 5.4723 -6.9280 2.9783 16 6 6.1560 -7.1422 1.7959 17 6 5.5719 -6.8038 0.5911 18 6 4.3029 -6.2495 0.5629 19 6 3.4552 -5.7988 -0.6072 20 1 4.0595 -5.2378 -1.3201 21 7 2.8389 -6.9547 -1.2634 22 6 3.4950 -7.5948 -2.2808 23 1 4.4670 -7.2478 -2.5991 24 6 2.9108 -8.6896 -2.9028 25 7 1.7265 -9.1128 -2.5145 26 14 3.8061 -9.5633 -4.2901 27 1 5.1108 -8.8974 -4.5339 28 1 4.0361 -10.9816 -3.9150 29 1 2.9828 -9.5050 -5.5246 30 1 -0.3633 0.0025 1.0277 31 1 -0.3634 0.8888 -0.5159 32 1 -0.3634 -0.8912 -0.5117 33 1 4.4043 1.3443 -0.0108 34 1 3.7458 -3.2719 -0.0022 35 1 2.0583 -4.6115 2.1433 36 1 1.4852 -6.1852 1.5154 37 1 3.6727 -6.2101 3.8763 38 1 5.9276 -7.1919 3.9213 39 1 7.1458 -7.5739 1.8143 40 1 6.1067 -6.9711 -0.3322 41 1 1.9643 -7.2640 -0.9799 42 1 1.3181 -9.8776 -2.9494 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960255320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:13 Heat of formation + Delta-G solvation = 31.586309 kcal Electronic energy + Delta-G solvation = -27268.961722 eV Core-core repulsion = 23408.956682 eV Total energy + Delta-G solvation = -3860.005040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.64119 -40.29958 -38.99999 -36.31001 -35.52716 -34.07299 -32.71793 -31.73051 -31.19796 -29.80822 -28.58396 -27.41182 -26.13526 -24.25118 -23.23314 -22.39572 -21.65489 -20.87401 -20.25733 -20.14234 -18.35271 -17.45631 -17.08979 -16.69054 -16.23055 -15.75731 -15.06818 -14.84198 -14.77847 -14.61703 -14.37148 -14.07180 -13.50423 -13.42232 -13.20120 -13.10253 -12.96422 -12.93705 -12.69155 -12.35152 -11.65562 -11.44735 -11.31759 -11.14362 -11.10759 -11.05885 -10.88456 -10.65749 -10.43568 -10.22521 -10.13581 -9.87924 -9.29647 -9.10002 -8.93538 -8.37789 -8.14698 -7.14529 -5.88448 -3.19178 0.64796 1.78043 1.83586 2.21512 2.27121 3.00576 3.11884 3.37259 3.42806 3.45105 3.81149 4.17697 4.50884 4.53058 4.59672 4.74338 4.99484 5.22024 5.28518 5.29916 5.38281 5.44575 5.45535 5.52067 5.54873 5.65757 5.69584 5.76057 5.85050 5.93700 6.03839 6.07952 6.14203 6.18690 6.29338 6.43359 6.54591 6.64996 6.84583 6.92603 7.17180 7.22956 7.43275 7.48347 7.59334 8.02588 8.27297 9.39779 9.89918 10.25733 11.33239 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010854 B = 0.003776 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.131909 B = 7413.619529 C = 8807.766681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.076 3.924 3 N -0.495 5.495 4 C 0.199 3.801 5 O -0.190 6.190 6 C -0.110 4.110 7 C 0.608 3.392 8 O -0.511 6.511 9 N -0.698 5.698 10 C 0.134 3.866 11 H 0.115 0.885 12 C -0.086 4.086 13 C -0.098 4.098 14 C -0.114 4.114 15 C -0.131 4.131 16 C -0.127 4.127 17 C -0.090 4.090 18 C -0.094 4.094 19 C 0.207 3.793 20 H 0.065 0.935 21 N -0.702 5.702 22 C -0.246 4.246 23 H 0.073 0.927 24 C -0.006 4.006 25 N -0.926 5.926 26 Si 0.908 3.092 27 H -0.279 1.279 28 H -0.290 1.290 29 H -0.290 1.290 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.256 0.744 34 H 0.404 0.596 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.388 0.612 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.224 16.164 9.315 19.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.047 4.047 3 N -0.224 5.224 4 C -0.026 4.026 5 O -0.076 6.076 6 C -0.165 4.165 7 C 0.393 3.607 8 O -0.388 6.388 9 N -0.348 5.348 10 C 0.028 3.972 11 H 0.133 0.867 12 C -0.125 4.125 13 C -0.099 4.099 14 C -0.132 4.132 15 C -0.150 4.150 16 C -0.145 4.145 17 C -0.108 4.108 18 C -0.098 4.098 19 C 0.096 3.904 20 H 0.083 0.917 21 N -0.342 5.342 22 C -0.376 4.376 23 H 0.091 0.909 24 C -0.202 4.202 25 N -0.573 5.573 26 Si 0.739 3.261 27 H -0.204 1.204 28 H -0.217 1.217 29 H -0.217 1.217 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.271 0.729 34 H 0.239 0.761 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.223 0.777 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.314 16.431 9.121 19.282 hybrid contribution 1.236 -1.272 -0.509 1.845 sum 5.550 15.159 8.613 18.297 Atomic orbital electron populations 1.20406 0.85252 1.04507 1.03725 1.22071 0.98442 0.86301 0.97916 1.70343 1.01358 1.31509 1.19201 1.28312 0.97613 0.79490 0.97235 1.84507 1.29706 1.24394 1.68981 1.23037 0.81346 0.96426 1.15672 1.16287 0.85921 0.81217 0.77293 1.90875 1.15613 1.81696 1.50626 1.45803 1.09691 1.06016 1.73286 1.22064 1.00456 0.78426 0.96205 0.86711 1.21412 0.94796 0.99940 0.96309 1.20507 0.96116 0.99742 0.93499 1.20479 0.95465 1.00711 0.96544 1.20853 0.95154 1.01202 0.97764 1.20975 0.99822 1.01107 0.92631 1.20615 0.94714 0.97961 0.97553 1.21718 0.93703 0.97477 0.96859 1.19824 0.90694 0.89222 0.90699 0.91719 1.42260 1.20889 1.31929 1.39087 1.19230 1.00985 1.08802 1.08629 0.90895 1.24765 0.96863 0.98637 0.99981 1.69669 1.15827 1.27811 1.43955 0.86111 0.78736 0.79485 0.81775 1.20438 1.21724 1.21696 0.90017 0.90533 0.88420 0.72869 0.76095 0.90995 0.89070 0.87143 0.86776 0.86682 0.86523 0.77694 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 9.87 36.01 0.36 -0.54 16 2 C 0.08 0.96 7.16 -82.47 -0.59 0.37 16 3 N -0.49 -5.67 11.26 -10.88 -0.12 -5.79 16 4 C 0.20 1.68 13.21 52.24 0.69 2.37 16 5 O -0.19 -2.05 10.57 4.41 0.05 -2.00 16 6 C -0.11 -1.42 7.18 -36.84 -0.26 -1.68 16 7 C 0.61 8.93 7.79 -12.84 -0.10 8.83 16 8 O -0.51 -8.65 14.44 5.21 0.08 -8.58 16 9 N -0.70 -9.83 5.11 -53.73 -0.27 -10.11 16 10 C 0.13 2.20 3.03 -66.51 -0.20 1.99 16 11 H 0.12 2.12 7.47 -51.93 -0.39 1.73 16 12 C -0.09 -1.34 6.48 -26.85 -0.17 -1.52 16 13 C -0.10 -1.61 6.14 -104.20 -0.64 -2.25 16 14 C -0.11 -1.69 10.04 -39.54 -0.40 -2.09 16 15 C -0.13 -1.86 10.05 -39.63 -0.40 -2.26 16 16 C -0.13 -1.91 10.05 -39.63 -0.40 -2.30 16 17 C -0.09 -1.54 10.04 -39.53 -0.40 -1.94 16 18 C -0.09 -1.68 5.77 -104.21 -0.60 -2.28 16 19 C 0.21 3.91 3.13 -68.04 -0.21 3.70 16 20 H 0.06 1.22 8.03 -51.93 -0.42 0.80 16 21 N -0.70 -16.72 5.13 -53.53 -0.27 -17.00 16 22 C -0.25 -6.49 9.96 -15.06 -0.15 -6.64 16 23 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 24 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 25 N -0.93 -27.14 13.06 55.49 0.72 -26.42 16 26 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 1.18 6.47 -51.93 -0.34 0.85 16 33 H 0.26 0.70 8.06 -52.48 -0.42 0.28 16 34 H 0.40 5.03 8.45 -40.82 -0.35 4.68 16 35 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 36 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 38 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.12 1.99 8.06 -52.48 -0.42 1.57 16 41 H 0.39 9.93 7.83 -40.82 -0.32 9.61 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 363.03 15.07 5.47 5.47 Total: -1.00 -32.20 363.03 -8.11 -40.31 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -5.15 Total: 13.86 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -3.58 Total: -6.49 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.05 Total: -59.31 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.12 Total: -10.58 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.20 -8.11 -40.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960255320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.892 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds