Wall clock time and date at job start Tue Mar 31 2020 15:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33686 * 126.27331 * 2 1 4 4 C 1.30612 * 108.99470 * 180.25767 * 3 2 1 5 5 O 1.33670 * 109.15603 * 359.76813 * 4 3 2 6 6 C 1.35342 * 107.68138 * 359.97438 * 5 4 3 7 7 C 1.46720 * 126.64399 * 179.97438 * 6 5 4 8 8 O 1.21677 * 120.00178 * 180.02562 * 7 6 5 9 9 N 1.34771 * 119.99731 * 0.03202 * 7 6 5 10 10 C 1.46507 * 119.99915 * 179.97438 * 9 7 6 11 11 H 1.08991 * 110.72959 * 31.59285 * 10 9 7 12 12 C 1.54344 * 110.82113 * 267.96523 * 10 9 7 13 13 C 1.51373 * 105.17334 * 268.12159 * 12 10 9 14 14 C 1.38499 * 130.39525 * 162.79321 * 13 12 10 15 15 C 1.38101 * 120.21728 * 180.02562 * 14 13 12 16 16 C 1.38253 * 119.93411 * 359.96069 * 15 14 13 17 17 C 1.38104 * 119.93275 * 0.02562 * 16 15 14 18 18 C 1.38214 * 109.75441 * 342.81647 * 13 12 10 19 19 C 1.51365 * 109.76278 * 359.97438 * 18 13 12 20 20 H 1.09003 * 110.38835 * 136.16436 * 19 18 13 21 21 N 1.46506 * 110.30005 * 258.26829 * 19 18 13 22 22 C 1.36939 * 120.00073 * 270.46984 * 21 19 18 23 23 H 1.08004 * 119.99859 * 0.02562 * 22 21 19 24 24 C 1.38805 * 119.99849 * 180.02562 * 22 21 19 25 25 N 1.31622 * 120.00455 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00168 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46615 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47374 * 119.99782 * 26 24 22 29 29 H 1.48495 * 109.47187 * 240.00172 * 26 24 22 30 30 H 1.08999 * 109.46944 * 270.13718 * 1 2 3 31 31 H 1.09004 * 109.47150 * 30.13369 * 1 2 3 32 32 H 1.08996 * 109.47433 * 150.13791 * 1 2 3 33 33 H 1.08004 * 125.42413 * 179.74807 * 4 3 2 34 34 H 0.97001 * 120.00599 * 359.97438 * 9 7 6 35 35 H 1.08996 * 110.30461 * 27.04571 * 12 10 9 36 36 H 1.09000 * 110.30234 * 149.10173 * 12 10 9 37 37 H 1.08006 * 119.89070 * 0.03324 * 14 13 12 38 38 H 1.07993 * 120.03244 * 179.97438 * 15 14 13 39 39 H 1.08000 * 120.03277 * 180.02562 * 16 15 14 40 40 H 1.08006 * 119.89046 * 179.97438 * 17 16 15 41 41 H 0.97005 * 119.99811 * 90.74777 * 21 19 18 42 42 H 0.97000 * 120.00679 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5451 0.6899 -0.0056 5 8 3.5889 -0.6461 -0.0042 6 6 2.3136 -1.0992 0.0031 7 6 1.8826 -2.5017 0.0066 8 8 0.6966 -2.7737 0.0128 9 7 2.8003 -3.4886 0.0030 10 6 2.3700 -4.8891 0.0071 11 1 1.4239 -5.0035 -0.5219 12 6 2.2653 -5.4267 1.4500 13 6 3.6192 -6.0361 1.7450 14 6 4.2065 -6.3764 2.9522 15 6 5.4723 -6.9280 2.9783 16 6 6.1560 -7.1422 1.7959 17 6 5.5719 -6.8038 0.5911 18 6 4.3029 -6.2495 0.5629 19 6 3.4552 -5.7988 -0.6072 20 1 4.0595 -5.2378 -1.3201 21 7 2.8389 -6.9547 -1.2634 22 6 3.4950 -7.5948 -2.2808 23 1 4.4670 -7.2478 -2.5991 24 6 2.9108 -8.6896 -2.9028 25 7 1.7265 -9.1128 -2.5145 26 14 3.8061 -9.5633 -4.2901 27 1 5.1108 -8.8974 -4.5339 28 1 4.0361 -10.9816 -3.9150 29 1 2.9828 -9.5050 -5.5246 30 1 -0.3633 0.0025 1.0277 31 1 -0.3634 0.8888 -0.5159 32 1 -0.3634 -0.8912 -0.5117 33 1 4.4043 1.3443 -0.0108 34 1 3.7458 -3.2719 -0.0022 35 1 2.0583 -4.6115 2.1433 36 1 1.4852 -6.1852 1.5154 37 1 3.6727 -6.2101 3.8763 38 1 5.9276 -7.1919 3.9213 39 1 7.1458 -7.5739 1.8143 40 1 6.1067 -6.9711 -0.3322 41 1 1.9643 -7.2640 -0.9799 42 1 1.3181 -9.8776 -2.9494 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960255320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:12 Heat of formation + Delta-G solvation = 8.364126 kcal Electronic energy + Delta-G solvation = -27269.968712 eV Core-core repulsion = 23408.956682 eV Total energy + Delta-G solvation = -3861.012030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.48558 -41.58641 -40.21173 -37.61695 -36.46227 -35.72627 -34.09763 -32.82234 -32.59689 -31.34540 -29.70082 -28.47719 -27.70474 -25.51706 -24.72845 -23.51044 -22.71273 -21.96571 -21.55160 -21.43211 -19.52270 -19.23096 -17.97367 -17.65334 -17.40214 -17.11956 -16.53085 -16.25706 -15.97469 -15.69767 -15.55941 -15.40559 -15.15854 -14.89607 -14.31888 -14.27805 -14.23144 -14.02941 -13.94653 -13.23492 -13.13067 -12.98414 -12.84197 -12.64823 -12.33554 -12.20748 -12.16419 -12.04793 -11.99266 -11.85492 -11.67246 -11.31950 -11.02924 -10.44751 -9.97219 -9.63235 -9.42811 -9.08998 -7.97329 -5.27804 -0.26607 0.54492 0.58815 1.36838 1.38536 1.46747 1.47029 1.56608 1.91480 2.02710 2.54358 2.94128 3.13436 3.35181 3.37013 3.64235 3.67113 3.71895 4.02610 4.09095 4.16177 4.25835 4.30560 4.38970 4.42892 4.44396 4.65598 4.67676 4.73056 4.77456 4.82187 4.86864 4.94379 5.01980 5.19443 5.26115 5.30184 5.35659 5.48400 5.64439 5.70253 5.88054 6.19072 6.21994 6.23989 6.52950 6.89063 7.29515 7.97164 8.22898 9.25705 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010854 B = 0.003776 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.131909 B = 7413.619529 C = 8807.766681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.076 3.924 3 N -0.523 5.523 4 C 0.231 3.769 5 O -0.193 6.193 6 C -0.137 4.137 7 C 0.609 3.391 8 O -0.541 6.541 9 N -0.690 5.690 10 C 0.146 3.854 11 H 0.089 0.911 12 C -0.079 4.079 13 C -0.105 4.105 14 C -0.117 4.117 15 C -0.123 4.123 16 C -0.127 4.127 17 C -0.110 4.110 18 C -0.116 4.116 19 C 0.207 3.793 20 H 0.061 0.939 21 N -0.717 5.717 22 C -0.237 4.237 23 H 0.078 0.922 24 C -0.068 4.068 25 N -0.966 5.966 26 Si 0.970 3.030 27 H -0.264 1.264 28 H -0.295 1.295 29 H -0.295 1.295 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.311 0.689 34 H 0.413 0.587 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.136 0.864 38 H 0.150 0.850 39 H 0.142 0.858 40 H 0.109 0.891 41 H 0.375 0.625 42 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.715 17.759 10.932 22.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.047 4.047 3 N -0.253 5.253 4 C 0.006 3.994 5 O -0.079 6.079 6 C -0.192 4.192 7 C 0.396 3.604 8 O -0.421 6.421 9 N -0.340 5.340 10 C 0.040 3.960 11 H 0.107 0.893 12 C -0.117 4.117 13 C -0.105 4.105 14 C -0.135 4.135 15 C -0.141 4.141 16 C -0.145 4.145 17 C -0.129 4.129 18 C -0.119 4.119 19 C 0.097 3.903 20 H 0.079 0.921 21 N -0.356 5.356 22 C -0.369 4.369 23 H 0.096 0.904 24 C -0.261 4.261 25 N -0.616 5.616 26 Si 0.799 3.201 27 H -0.188 1.188 28 H -0.222 1.222 29 H -0.222 1.222 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.325 0.675 34 H 0.250 0.750 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.154 0.846 38 H 0.168 0.832 39 H 0.160 0.840 40 H 0.127 0.873 41 H 0.208 0.792 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.863 18.085 10.761 22.135 hybrid contribution 0.584 -1.571 -0.915 1.909 sum 7.447 16.514 9.847 20.619 Atomic orbital electron populations 1.20414 0.84858 1.04339 1.04241 1.22334 0.99100 0.86629 0.96633 1.70397 1.02500 1.31194 1.21166 1.29639 0.98282 0.78884 0.92550 1.84511 1.28517 1.25551 1.69341 1.22540 0.82447 0.95398 1.18788 1.16465 0.85473 0.82016 0.76474 1.90854 1.16786 1.82453 1.52004 1.45611 1.10176 1.04930 1.73331 1.21653 0.98380 0.79453 0.96467 0.89330 1.21316 0.94563 1.00067 0.95733 1.20625 0.95955 1.00102 0.93859 1.20849 0.95975 0.99893 0.96780 1.21302 0.94567 0.99286 0.98928 1.21301 1.00944 1.00304 0.91966 1.20767 0.94766 0.98846 0.98528 1.21492 0.94541 0.99300 0.96560 1.19910 0.91278 0.87964 0.91099 0.92148 1.42363 1.20648 1.33070 1.39472 1.19573 1.00747 1.08139 1.08426 0.90371 1.25520 0.97800 1.00033 1.02753 1.69821 1.17565 1.28546 1.45678 0.85128 0.78152 0.78029 0.78777 1.18788 1.22187 1.22186 0.89126 0.89115 0.90060 0.67466 0.75025 0.89539 0.89973 0.84588 0.83196 0.84023 0.87322 0.79202 0.93967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 9.87 71.24 0.70 -1.07 16 2 C 0.08 1.86 7.16 41.83 0.30 2.16 16 3 N -0.52 -10.87 11.26 -303.12 -3.41 -14.28 16 4 C 0.23 3.14 13.21 130.42 1.72 4.87 16 5 O -0.19 -3.76 10.57 -7.12 -0.08 -3.83 16 6 C -0.14 -3.47 7.18 24.05 0.17 -3.30 16 7 C 0.61 18.26 7.79 86.46 0.67 18.94 16 8 O -0.54 -19.14 14.44 -4.27 -0.06 -19.20 16 9 N -0.69 -19.77 5.11 -442.12 -2.26 -22.03 16 10 C 0.15 5.00 3.03 45.91 0.14 5.14 16 11 H 0.09 3.51 7.47 -2.39 -0.02 3.49 16 12 C -0.08 -2.47 6.48 30.52 0.20 -2.27 16 13 C -0.10 -3.34 6.14 -19.59 -0.12 -3.46 16 14 C -0.12 -3.16 10.04 22.30 0.22 -2.94 16 15 C -0.12 -3.03 10.05 22.24 0.22 -2.80 16 16 C -0.13 -3.47 10.05 22.24 0.22 -3.25 16 17 C -0.11 -3.71 10.04 22.30 0.22 -3.49 16 18 C -0.12 -4.14 5.77 -19.60 -0.11 -4.25 16 19 C 0.21 8.06 3.13 44.92 0.14 8.20 16 20 H 0.06 2.35 8.03 -2.39 -0.02 2.33 16 21 N -0.72 -35.47 5.13 -323.27 -1.66 -37.13 16 22 C -0.24 -12.82 9.96 84.03 0.84 -11.99 16 23 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 24 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 25 N -0.97 -58.68 13.06 21.65 0.28 -58.40 16 26 Si 0.97 45.59 29.55 68.60 2.03 47.62 16 27 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 28 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 29 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 30 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 2.05 6.47 -2.39 -0.02 2.03 16 33 H 0.31 0.07 8.06 -2.91 -0.02 0.04 16 34 H 0.41 10.24 8.45 -92.71 -0.78 9.46 16 35 H 0.09 2.43 8.09 -2.39 -0.02 2.41 16 36 H 0.08 2.71 8.14 -2.39 -0.02 2.70 16 37 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 38 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 39 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 40 H 0.11 3.72 8.06 -2.91 -0.02 3.70 16 41 H 0.38 20.22 7.83 -92.70 -0.73 19.50 16 42 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -72.16 363.03 0.43 -71.73 By element: Atomic # 1 Polarization: 38.87 SS G_CDS: -0.43 Total: 38.44 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 6.01 Total: -2.92 kcal Atomic # 7 Polarization: -124.79 SS G_CDS: -7.05 Total: -131.84 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.14 Total: -23.03 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -72.16 0.43 -71.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960255320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.094 kcal (2) G-P(sol) polarization free energy of solvation -72.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds