Wall clock time and date at job start Tue Mar 31 2020 15:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.34249 * 126.52558 * 2 1 4 4 C 1.34055 * 108.22701 * 179.83754 * 3 2 1 5 5 N 1.29931 * 109.24263 * 0.43708 * 4 3 2 6 6 C 1.36069 * 108.47611 * 359.73209 * 5 4 3 7 7 C 1.47423 * 126.44722 * 180.02562 * 6 5 4 8 8 O 1.21614 * 119.99529 * 179.97438 * 7 6 5 9 9 N 1.34774 * 119.99804 * 359.97388 * 7 6 5 10 10 C 1.46503 * 119.99475 * 180.02562 * 9 7 6 11 11 H 1.09004 * 110.73345 * 31.59625 * 10 9 7 12 12 C 1.54347 * 110.82263 * 267.96692 * 10 9 7 13 13 C 1.51362 * 105.16973 * 215.42953 * 12 10 9 14 14 C 1.38504 * 130.38913 * 197.19077 * 13 12 10 15 15 C 1.38103 * 120.21536 * 180.02562 * 14 13 12 16 16 C 1.38258 * 119.93645 * 359.97438 * 15 14 13 17 17 C 1.38110 * 119.93278 * 0.02562 * 16 15 14 18 18 C 1.38217 * 109.76305 * 17.19055 * 13 12 10 19 19 C 1.51365 * 109.75666 * 359.97438 * 18 13 12 20 20 H 1.09002 * 110.38887 * 101.77694 * 19 18 13 21 21 N 1.46500 * 110.30617 * 223.88894 * 19 18 13 22 22 C 1.36940 * 119.99892 * 270.74850 * 21 19 18 23 23 H 1.08003 * 120.00057 * 359.97438 * 22 21 19 24 24 C 1.38809 * 120.00034 * 179.97438 * 22 21 19 25 25 N 1.31625 * 120.00292 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00136 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46926 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47131 * 119.99527 * 26 24 22 29 29 H 1.48499 * 109.47248 * 239.99674 * 26 24 22 30 30 H 1.09002 * 109.47152 * 269.68817 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.68917 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.68898 * 1 2 3 33 33 H 1.08000 * 125.37750 * 180.12490 * 4 3 2 34 34 H 0.96995 * 120.00685 * 359.97438 * 9 7 6 35 35 H 1.09002 * 110.30103 * 334.35388 * 12 10 9 36 36 H 1.08999 * 110.30092 * 96.50619 * 12 10 9 37 37 H 1.07995 * 119.88839 * 359.97438 * 14 13 12 38 38 H 1.07998 * 120.03296 * 179.97438 * 15 14 13 39 39 H 1.07992 * 120.03361 * 180.02562 * 16 15 14 40 40 H 1.08000 * 119.89002 * 179.97438 * 17 16 15 41 41 H 0.96995 * 120.00543 * 90.74362 * 21 19 18 42 42 H 0.96993 * 120.00181 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6579 0.0036 5 7 3.6002 -0.6412 -0.0035 6 6 2.3170 -1.0936 -0.0060 7 6 1.8853 -2.5032 -0.0132 8 8 0.7002 -2.7762 -0.0143 9 7 2.8041 -3.4893 -0.0186 10 6 2.3750 -4.8900 -0.0263 11 1 1.4318 -5.0018 -0.5610 12 6 2.2632 -5.4376 1.4125 13 6 2.7036 -6.8829 1.3216 14 6 2.5152 -7.9355 2.2018 15 6 3.0150 -9.1881 1.9045 16 6 3.7055 -9.3931 0.7243 17 6 3.8944 -8.3447 -0.1546 18 6 3.3939 -7.0878 0.1418 19 6 3.4641 -5.7943 -0.6412 20 1 4.4456 -5.3342 -0.5272 21 7 3.1807 -6.0412 -2.0572 22 6 4.2010 -6.3549 -2.9151 23 1 5.2146 -6.4198 -2.5478 24 6 3.9325 -6.5893 -4.2566 25 7 2.6972 -6.5107 -4.7041 26 14 5.3244 -7.0165 -5.4270 27 1 6.6083 -7.0408 -4.6812 28 1 5.0745 -8.3517 -6.0269 29 1 5.3969 -5.9959 -6.5033 30 1 -0.3633 -0.0056 1.0277 31 1 -0.3633 -0.8872 -0.5187 32 1 -0.3633 0.8928 -0.5090 33 1 4.4489 1.2977 0.0064 34 1 3.7493 -3.2716 -0.0181 35 1 2.9220 -4.8827 2.0805 36 1 1.2322 -5.3775 1.7609 37 1 1.9763 -7.7760 3.1240 38 1 2.8668 -10.0067 2.5931 39 1 4.0967 -10.3720 0.4900 40 1 4.4343 -8.5055 -1.0761 41 1 2.2705 -5.9826 -2.3871 42 1 2.5096 -6.6741 -5.6416 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960255517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:14 Heat of formation + Delta-G solvation = 29.285778 kcal Electronic energy + Delta-G solvation = -27195.033837 eV Core-core repulsion = 23334.929039 eV Total energy + Delta-G solvation = -3860.104799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.53946 -40.09096 -38.88546 -36.12213 -34.95323 -33.96417 -32.68832 -32.46244 -31.17036 -29.68350 -28.28303 -27.09827 -26.00376 -24.14496 -23.08000 -22.42362 -21.49165 -20.66591 -20.31556 -20.00042 -18.20213 -17.29240 -17.00545 -16.30941 -15.98859 -15.67961 -15.18857 -14.84714 -14.69791 -14.43434 -14.08765 -14.03373 -13.61611 -13.28500 -13.20079 -13.05239 -12.85851 -12.55989 -12.47138 -12.40553 -12.09150 -11.72439 -11.42769 -11.05922 -10.93891 -10.89277 -10.81509 -10.56266 -10.37588 -10.09740 -9.96549 -9.76104 -9.11613 -9.02602 -8.72810 -8.29094 -8.06132 -7.05841 -5.81398 -3.11623 1.02350 1.82442 1.92030 1.98725 2.43563 3.25110 3.40236 3.41499 3.46146 3.48314 3.95416 4.24861 4.52431 4.55137 4.72417 4.89196 5.04768 5.11655 5.29184 5.32744 5.37703 5.42828 5.47461 5.55031 5.58320 5.70862 5.74844 5.89697 5.90405 5.96853 5.98750 6.14477 6.20250 6.27186 6.40937 6.49657 6.66184 6.77948 6.92370 7.03937 7.26488 7.30560 7.51825 7.65481 7.75870 8.34667 8.34955 9.46901 9.99891 10.35674 11.40446 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009072 B = 0.004260 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3085.739621 B = 6571.160525 C = 8807.970819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.040 3.960 3 O -0.203 6.203 4 C 0.171 3.829 5 N -0.460 5.460 6 C -0.073 4.073 7 C 0.604 3.396 8 O -0.537 6.537 9 N -0.691 5.691 10 C 0.140 3.860 11 H 0.107 0.893 12 C -0.086 4.086 13 C -0.106 4.106 14 C -0.115 4.115 15 C -0.132 4.132 16 C -0.129 4.129 17 C -0.079 4.079 18 C -0.090 4.090 19 C 0.206 3.794 20 H 0.070 0.930 21 N -0.710 5.710 22 C -0.243 4.243 23 H 0.072 0.928 24 C -0.007 4.007 25 N -0.927 5.927 26 Si 0.905 3.095 27 H -0.279 1.279 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.254 0.746 34 H 0.409 0.591 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.128 0.872 41 H 0.387 0.613 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.571 10.339 14.386 17.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.016 4.016 3 O -0.089 6.089 4 C -0.058 4.058 5 N -0.188 5.188 6 C -0.192 4.192 7 C 0.389 3.611 8 O -0.414 6.414 9 N -0.340 5.340 10 C 0.034 3.966 11 H 0.124 0.876 12 C -0.125 4.125 13 C -0.107 4.107 14 C -0.133 4.133 15 C -0.150 4.150 16 C -0.147 4.147 17 C -0.098 4.098 18 C -0.094 4.094 19 C 0.095 3.905 20 H 0.087 0.913 21 N -0.350 5.350 22 C -0.374 4.374 23 H 0.090 0.910 24 C -0.204 4.204 25 N -0.574 5.574 26 Si 0.736 3.264 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.219 1.219 30 H 0.109 0.891 31 H 0.133 0.867 32 H 0.098 0.902 33 H 0.270 0.730 34 H 0.245 0.755 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.145 0.855 41 H 0.222 0.778 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.709 9.756 14.224 17.262 hybrid contribution 0.616 0.235 -0.881 1.101 sum -0.093 9.991 13.343 16.669 Atomic orbital electron populations 1.20608 0.82569 1.05542 1.04580 1.23755 0.95214 0.83333 0.99301 1.84363 1.18618 1.36336 1.69604 1.27984 0.85233 0.91265 1.01303 1.70747 1.21835 1.10130 1.16130 1.21542 0.88753 0.95732 1.13222 1.16656 0.85575 0.82494 0.76339 1.90774 1.16226 1.83186 1.51261 1.45643 1.10076 1.05337 1.72957 1.21988 1.00147 0.79229 0.95215 0.87550 1.21341 1.01768 0.92050 0.97339 1.20434 0.99847 0.94772 0.95622 1.20452 1.01426 0.92412 0.99053 1.20869 0.99999 0.96531 0.97590 1.21044 1.00255 0.98671 0.94780 1.20783 0.98607 0.91444 0.98921 1.21649 0.96105 0.97104 0.94564 1.19942 0.95971 0.89063 0.85545 0.91260 1.42407 1.08488 1.83003 1.01064 1.19243 0.88819 1.40060 0.89287 0.90972 1.24751 0.96287 1.02288 0.97092 1.69679 1.17561 1.55492 1.14665 0.86159 0.81324 0.77681 0.81257 1.20451 1.21805 1.21859 0.89090 0.86729 0.90223 0.73014 0.75512 0.90284 0.90654 0.87129 0.86785 0.86629 0.85451 0.77812 0.93432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 9.88 36.01 0.36 -0.40 16 2 C 0.04 0.50 7.44 -35.08 -0.26 0.24 16 3 O -0.20 -2.17 10.73 6.52 0.07 -2.10 16 4 C 0.17 1.63 13.19 51.96 0.69 2.32 16 5 N -0.46 -6.12 11.06 -11.48 -0.13 -6.25 16 6 C -0.07 -1.06 6.99 -83.02 -0.58 -1.65 16 7 C 0.60 10.09 7.81 -12.52 -0.10 9.99 16 8 O -0.54 -9.84 14.45 5.27 0.08 -9.76 16 9 N -0.69 -11.29 5.13 -53.51 -0.27 -11.57 16 10 C 0.14 2.46 3.13 -66.52 -0.21 2.25 16 11 H 0.11 2.12 7.22 -51.93 -0.37 1.75 16 12 C -0.09 -1.32 6.49 -26.85 -0.17 -1.50 16 13 C -0.11 -1.76 6.14 -104.21 -0.64 -2.40 16 14 C -0.12 -1.73 10.04 -39.53 -0.40 -2.12 16 15 C -0.13 -1.92 10.05 -39.62 -0.40 -2.32 16 16 C -0.13 -2.07 10.05 -39.62 -0.40 -2.47 16 17 C -0.08 -1.49 10.00 -39.53 -0.40 -1.89 16 18 C -0.09 -1.71 5.79 -104.21 -0.60 -2.31 16 19 C 0.21 4.08 3.23 -68.06 -0.22 3.86 16 20 H 0.07 1.36 7.75 -51.93 -0.40 0.96 16 21 N -0.71 -17.35 5.14 -53.55 -0.28 -17.62 16 22 C -0.24 -6.49 9.69 -15.06 -0.15 -6.63 16 23 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 24 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 25 N -0.93 -27.71 13.06 55.49 0.72 -26.98 16 26 Si 0.90 22.03 29.55 -169.99 -5.02 17.01 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.11 1.34 6.48 -51.93 -0.34 1.00 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.25 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.41 6.31 8.15 -40.82 -0.33 5.97 16 35 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 39 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.13 2.59 7.79 -52.49 -0.41 2.18 16 41 H 0.39 10.37 7.61 -40.82 -0.31 10.05 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 361.72 15.07 5.45 5.45 Total: -1.00 -32.83 361.72 -8.04 -40.88 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -5.09 Total: 16.28 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -3.57 Total: -5.34 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: 0.05 Total: -62.41 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.15 Total: -11.86 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.83 -8.04 -40.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960255517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.162 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds