Wall clock time and date at job start Tue Mar 31 2020 15:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.34249 * 126.52558 * 2 1 4 4 C 1.34055 * 108.22701 * 179.83754 * 3 2 1 5 5 N 1.29931 * 109.24263 * 0.43708 * 4 3 2 6 6 C 1.36069 * 108.47611 * 359.73209 * 5 4 3 7 7 C 1.47423 * 126.44722 * 180.02562 * 6 5 4 8 8 O 1.21614 * 119.99529 * 179.97438 * 7 6 5 9 9 N 1.34774 * 119.99804 * 359.97388 * 7 6 5 10 10 C 1.46503 * 119.99475 * 180.02562 * 9 7 6 11 11 H 1.09004 * 110.73345 * 31.59625 * 10 9 7 12 12 C 1.54347 * 110.82263 * 267.96692 * 10 9 7 13 13 C 1.51362 * 105.16973 * 215.42953 * 12 10 9 14 14 C 1.38504 * 130.38913 * 197.19077 * 13 12 10 15 15 C 1.38103 * 120.21536 * 180.02562 * 14 13 12 16 16 C 1.38258 * 119.93645 * 359.97438 * 15 14 13 17 17 C 1.38110 * 119.93278 * 0.02562 * 16 15 14 18 18 C 1.38217 * 109.76305 * 17.19055 * 13 12 10 19 19 C 1.51365 * 109.75666 * 359.97438 * 18 13 12 20 20 H 1.09002 * 110.38887 * 101.77694 * 19 18 13 21 21 N 1.46500 * 110.30617 * 223.88894 * 19 18 13 22 22 C 1.36940 * 119.99892 * 270.74850 * 21 19 18 23 23 H 1.08003 * 120.00057 * 359.97438 * 22 21 19 24 24 C 1.38809 * 120.00034 * 179.97438 * 22 21 19 25 25 N 1.31625 * 120.00292 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00136 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46926 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47131 * 119.99527 * 26 24 22 29 29 H 1.48499 * 109.47248 * 239.99674 * 26 24 22 30 30 H 1.09002 * 109.47152 * 269.68817 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.68917 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.68898 * 1 2 3 33 33 H 1.08000 * 125.37750 * 180.12490 * 4 3 2 34 34 H 0.96995 * 120.00685 * 359.97438 * 9 7 6 35 35 H 1.09002 * 110.30103 * 334.35388 * 12 10 9 36 36 H 1.08999 * 110.30092 * 96.50619 * 12 10 9 37 37 H 1.07995 * 119.88839 * 359.97438 * 14 13 12 38 38 H 1.07998 * 120.03296 * 179.97438 * 15 14 13 39 39 H 1.07992 * 120.03361 * 180.02562 * 16 15 14 40 40 H 1.08000 * 119.89002 * 179.97438 * 17 16 15 41 41 H 0.96995 * 120.00543 * 90.74362 * 21 19 18 42 42 H 0.96993 * 120.00181 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6579 0.0036 5 7 3.6002 -0.6412 -0.0035 6 6 2.3170 -1.0936 -0.0060 7 6 1.8853 -2.5032 -0.0132 8 8 0.7002 -2.7762 -0.0143 9 7 2.8041 -3.4893 -0.0186 10 6 2.3750 -4.8900 -0.0263 11 1 1.4318 -5.0018 -0.5610 12 6 2.2632 -5.4376 1.4125 13 6 2.7036 -6.8829 1.3216 14 6 2.5152 -7.9355 2.2018 15 6 3.0150 -9.1881 1.9045 16 6 3.7055 -9.3931 0.7243 17 6 3.8944 -8.3447 -0.1546 18 6 3.3939 -7.0878 0.1418 19 6 3.4641 -5.7943 -0.6412 20 1 4.4456 -5.3342 -0.5272 21 7 3.1807 -6.0412 -2.0572 22 6 4.2010 -6.3549 -2.9151 23 1 5.2146 -6.4198 -2.5478 24 6 3.9325 -6.5893 -4.2566 25 7 2.6972 -6.5107 -4.7041 26 14 5.3244 -7.0165 -5.4270 27 1 6.6083 -7.0408 -4.6812 28 1 5.0745 -8.3517 -6.0269 29 1 5.3969 -5.9959 -6.5033 30 1 -0.3633 -0.0056 1.0277 31 1 -0.3633 -0.8872 -0.5187 32 1 -0.3633 0.8928 -0.5090 33 1 4.4489 1.2977 0.0064 34 1 3.7493 -3.2716 -0.0181 35 1 2.9220 -4.8827 2.0805 36 1 1.2322 -5.3775 1.7609 37 1 1.9763 -7.7760 3.1240 38 1 2.8668 -10.0067 2.5931 39 1 4.0967 -10.3720 0.4900 40 1 4.4343 -8.5055 -1.0761 41 1 2.2705 -5.9826 -2.3871 42 1 2.5096 -6.6741 -5.6416 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960255517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:13 Heat of formation + Delta-G solvation = 5.177779 kcal Electronic energy + Delta-G solvation = -27196.079239 eV Core-core repulsion = 23334.929039 eV Total energy + Delta-G solvation = -3861.150200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.43287 -41.46113 -40.18661 -37.54137 -35.93903 -35.73593 -34.05978 -33.36988 -32.89458 -31.25401 -29.49722 -28.10576 -27.66681 -25.36934 -24.82203 -23.51097 -22.59969 -21.89187 -21.74523 -21.29196 -19.38275 -19.17906 -17.90971 -17.55137 -17.33373 -16.94246 -16.61843 -16.14072 -15.97571 -15.74822 -15.49240 -15.30913 -15.10538 -14.83603 -14.45651 -14.22308 -13.94056 -13.84765 -13.77366 -13.46744 -13.36192 -13.32224 -12.89146 -12.72924 -12.41588 -12.28313 -12.15347 -12.04922 -11.83151 -11.80869 -11.60184 -11.26294 -11.02991 -10.27137 -9.88375 -9.60692 -9.39277 -9.08079 -7.96117 -5.26052 0.04461 0.52940 0.60593 1.06117 1.44894 1.45157 1.55144 1.57293 2.04577 2.22614 2.53036 2.94395 3.09643 3.35844 3.44355 3.63647 3.68939 3.80042 4.04854 4.10407 4.12306 4.24338 4.29663 4.35626 4.37956 4.42185 4.59127 4.65745 4.76077 4.84180 4.87345 4.92330 4.95275 5.12322 5.19221 5.19711 5.31236 5.42145 5.47451 5.64929 5.72796 5.89666 6.20516 6.25224 6.28564 6.58589 7.06277 7.29706 7.98977 8.25076 9.27291 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009072 B = 0.004260 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3085.739621 B = 6571.160525 C = 8807.970819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.047 3.953 3 O -0.197 6.197 4 C 0.196 3.804 5 N -0.497 5.497 6 C -0.108 4.108 7 C 0.599 3.401 8 O -0.562 6.562 9 N -0.690 5.690 10 C 0.149 3.851 11 H 0.077 0.923 12 C -0.073 4.073 13 C -0.108 4.108 14 C -0.112 4.112 15 C -0.121 4.121 16 C -0.131 4.131 17 C -0.107 4.107 18 C -0.118 4.118 19 C 0.205 3.795 20 H 0.067 0.933 21 N -0.722 5.722 22 C -0.231 4.231 23 H 0.077 0.923 24 C -0.071 4.071 25 N -0.969 5.969 26 Si 0.969 3.031 27 H -0.264 1.264 28 H -0.294 1.294 29 H -0.296 1.296 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.306 0.694 34 H 0.413 0.587 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.145 0.855 38 H 0.154 0.846 39 H 0.138 0.862 40 H 0.099 0.901 41 H 0.371 0.629 42 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.190 11.059 16.962 20.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.010 4.010 3 O -0.084 6.084 4 C -0.033 4.033 5 N -0.225 5.225 6 C -0.226 4.226 7 C 0.386 3.614 8 O -0.441 6.441 9 N -0.339 5.339 10 C 0.043 3.957 11 H 0.095 0.905 12 C -0.112 4.112 13 C -0.109 4.109 14 C -0.130 4.130 15 C -0.139 4.139 16 C -0.149 4.149 17 C -0.125 4.125 18 C -0.122 4.122 19 C 0.096 3.904 20 H 0.084 0.916 21 N -0.360 5.360 22 C -0.363 4.363 23 H 0.095 0.905 24 C -0.264 4.264 25 N -0.620 5.620 26 Si 0.798 3.202 27 H -0.188 1.188 28 H -0.222 1.222 29 H -0.223 1.223 30 H 0.126 0.874 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.321 0.679 34 H 0.249 0.751 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.163 0.837 38 H 0.172 0.828 39 H 0.155 0.845 40 H 0.117 0.883 41 H 0.203 0.797 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.099 10.469 16.861 19.847 hybrid contribution 0.411 0.062 -1.551 1.605 sum 0.510 10.531 15.310 18.589 Atomic orbital electron populations 1.20667 0.81169 1.05669 1.05669 1.24084 0.96140 0.83102 0.97666 1.84410 1.19000 1.35512 1.69490 1.29169 0.85869 0.90730 0.97510 1.70704 1.21370 1.12100 1.18362 1.21333 0.90139 0.94962 1.16200 1.17015 0.85235 0.83534 0.75625 1.90747 1.17093 1.83858 1.52439 1.45595 1.10309 1.04859 1.73120 1.21715 0.97822 0.79774 0.96420 0.90506 1.21249 1.02746 0.91491 0.95680 1.20607 0.99302 0.95821 0.95179 1.20874 1.00638 0.91800 0.99652 1.21329 0.97899 0.97504 0.97124 1.21310 1.00099 0.98688 0.94784 1.20754 1.00009 0.92707 0.99052 1.21443 0.98332 0.96448 0.95937 1.20092 0.96478 0.90420 0.83453 0.91560 1.42523 1.07159 1.83278 1.03037 1.19558 0.89426 1.37646 0.89659 0.90550 1.25511 0.98404 1.03630 0.98813 1.69841 1.19612 1.58018 1.14482 0.85141 0.79270 0.76773 0.79012 1.18818 1.22157 1.22304 0.87383 0.89002 0.87607 0.67948 0.75088 0.88424 0.89678 0.83723 0.82847 0.84461 0.88282 0.79663 0.94121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 9.88 71.24 0.70 -0.71 16 2 C 0.05 1.13 7.44 25.19 0.19 1.31 16 3 O -0.20 -3.77 10.73 0.41 0.00 -3.76 16 4 C 0.20 3.23 13.19 130.52 1.72 4.96 16 5 N -0.50 -12.79 11.06 -305.14 -3.37 -16.16 16 6 C -0.11 -3.17 6.99 40.41 0.28 -2.89 16 7 C 0.60 20.70 7.81 86.66 0.68 21.38 16 8 O -0.56 -21.47 14.45 -4.07 -0.06 -21.53 16 9 N -0.69 -23.38 5.13 -441.47 -2.27 -25.64 16 10 C 0.15 5.43 3.13 45.90 0.14 5.57 16 11 H 0.08 3.28 7.22 -2.38 -0.02 3.26 16 12 C -0.07 -2.19 6.49 30.52 0.20 -1.99 16 13 C -0.11 -3.47 6.14 -19.60 -0.12 -3.59 16 14 C -0.11 -2.98 10.04 22.30 0.22 -2.76 16 15 C -0.12 -3.08 10.05 22.24 0.22 -2.86 16 16 C -0.13 -3.98 10.05 22.24 0.22 -3.75 16 17 C -0.11 -4.09 10.00 22.30 0.22 -3.87 16 18 C -0.12 -4.55 5.79 -19.60 -0.11 -4.67 16 19 C 0.21 8.46 3.23 44.91 0.15 8.61 16 20 H 0.07 2.72 7.75 -2.39 -0.02 2.70 16 21 N -0.72 -37.16 5.14 -323.32 -1.66 -38.82 16 22 C -0.23 -12.81 9.69 84.03 0.81 -12.00 16 23 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 24 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 25 N -0.97 -60.54 13.06 21.65 0.28 -60.26 16 26 Si 0.97 46.66 29.55 68.60 2.03 48.69 16 27 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 28 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 29 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 30 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.09 2.21 6.48 -2.39 -0.02 2.19 16 32 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.31 1.13 8.06 -2.91 -0.02 1.11 16 34 H 0.41 13.19 8.15 -92.71 -0.76 12.44 16 35 H 0.10 2.57 8.08 -2.39 -0.02 2.55 16 36 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 38 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 39 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 40 H 0.10 4.26 7.79 -2.91 -0.02 4.23 16 41 H 0.37 21.21 7.61 -92.71 -0.71 20.50 16 42 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -75.38 361.72 0.58 -74.81 By element: Atomic # 1 Polarization: 44.00 SS G_CDS: -0.38 Total: 43.62 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 6.00 Total: -0.93 kcal Atomic # 7 Polarization: -133.86 SS G_CDS: -7.02 Total: -140.88 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.05 Total: -25.29 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -75.38 0.58 -74.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960255517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.983 kcal (2) G-P(sol) polarization free energy of solvation -75.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds