Wall clock time and date at job start Tue Mar 31 2020 15:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29938 * 125.37946 * 2 1 4 4 C 1.36063 * 108.47676 * 179.97438 * 3 2 1 5 5 C 1.47425 * 126.44555 * 179.97438 * 4 3 2 6 6 O 1.21616 * 119.99620 * 180.02562 * 5 4 3 7 7 N 1.34772 * 120.00399 * 0.02679 * 5 4 3 8 8 C 1.46490 * 120.00227 * 179.97438 * 7 5 4 9 9 H 1.08998 * 110.88844 * 37.06518 * 8 7 5 10 10 C 1.54349 * 110.82559 * 273.54732 * 8 7 5 11 11 C 1.51368 * 105.25468 * 268.17112 * 10 8 7 12 12 C 1.38505 * 130.39030 * 162.78458 * 11 10 8 13 13 C 1.38101 * 120.21487 * 179.97438 * 12 11 10 14 14 C 1.38255 * 119.93640 * 0.02562 * 13 12 11 15 15 C 1.38101 * 119.93270 * 359.97438 * 14 13 12 16 16 C 1.38207 * 109.76303 * 342.76190 * 11 10 8 17 17 C 1.51372 * 109.75868 * 359.97438 * 16 11 10 18 18 H 1.09005 * 110.30436 * 136.11303 * 17 16 11 19 19 N 1.46493 * 110.30545 * 258.16911 * 17 16 11 20 20 C 1.36937 * 120.00068 * 273.54920 * 19 17 16 21 21 H 1.08004 * 119.99991 * 359.97438 * 20 19 17 22 22 C 1.38819 * 120.00320 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99549 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00154 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47151 * 60.00184 * 24 22 20 26 26 H 1.48505 * 109.46993 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47205 * 300.00152 * 24 22 20 28 28 C 1.36095 * 107.10552 * 0.23143 * 4 3 2 29 29 O 1.34052 * 125.38038 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47120 * 89.99944 * 1 2 3 31 31 H 1.09005 * 109.47018 * 209.99678 * 1 2 3 32 32 H 1.09004 * 109.47051 * 329.99899 * 1 2 3 33 33 H 0.96999 * 119.99476 * 0.02562 * 7 5 4 34 34 H 1.09002 * 110.30534 * 149.19604 * 10 8 7 35 35 H 1.08997 * 110.29932 * 27.14178 * 10 8 7 36 36 H 1.08004 * 119.89085 * 359.96003 * 12 11 10 37 37 H 1.07996 * 120.03561 * 179.97438 * 13 12 11 38 38 H 1.08000 * 120.03290 * 179.97438 * 14 13 12 39 39 H 1.08007 * 119.89341 * 179.97438 * 15 14 13 40 40 H 0.97005 * 120.00197 * 93.54027 * 19 17 16 41 41 H 0.97005 * 119.99648 * 180.02562 * 23 22 20 42 42 H 1.07992 * 126.52470 * 179.77424 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5611 0.6638 0.0006 5 6 4.7439 1.5439 0.0003 6 8 5.8604 1.0618 0.0004 7 7 4.5879 2.8825 -0.0002 8 6 5.7631 3.7570 0.0001 9 1 6.5602 3.3369 -0.6133 10 6 6.2561 4.0133 1.4401 11 6 5.5480 5.2751 1.8848 12 6 5.3544 5.7960 3.1535 13 6 4.6667 6.9819 3.3203 14 6 4.1690 7.6518 2.2181 15 6 4.3610 7.1340 0.9523 16 6 5.0509 5.9451 0.7829 17 6 5.3914 5.1797 -0.4779 18 1 4.5277 5.1411 -1.1419 19 7 6.5282 5.8033 -1.1597 20 6 6.3186 6.8295 -2.0418 21 1 5.3151 7.1789 -2.2352 22 6 7.3959 7.4207 -2.6876 23 7 8.6188 6.9953 -2.4515 24 14 7.1098 8.8201 -3.8914 25 1 6.4484 9.9494 -3.1897 26 1 8.4124 9.2736 -4.4420 27 1 6.2412 8.3495 -5.0002 28 6 3.5659 -0.6971 -0.0043 29 8 2.2831 -1.0930 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 3.6973 3.2669 0.0001 34 1 7.3359 4.1622 1.4494 35 1 5.9844 3.1791 2.0869 36 1 5.7424 5.2729 4.0151 37 1 4.5170 7.3852 4.3109 38 1 3.6305 8.5791 2.3468 39 1 3.9715 7.6576 0.0917 40 1 7.4295 5.4893 -0.9862 41 1 9.3716 7.4087 -2.9024 42 1 4.4360 -1.3368 -0.0087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960258069.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:14 Heat of formation + Delta-G solvation = 29.842935 kcal Electronic energy + Delta-G solvation = -27035.509118 eV Core-core repulsion = 23175.428479 eV Total energy + Delta-G solvation = -3860.080639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.63131 -40.19049 -38.87597 -36.13338 -35.12026 -33.98008 -32.65835 -32.27656 -31.13016 -29.73887 -28.31737 -27.73069 -26.10121 -24.51376 -23.09659 -22.13990 -21.59230 -20.75490 -20.08283 -20.03571 -18.24153 -17.37653 -17.13846 -16.58953 -16.12169 -15.64912 -15.04657 -14.82013 -14.65506 -14.41703 -14.23822 -14.10582 -13.81479 -13.49748 -13.36138 -13.06405 -12.88350 -12.87311 -12.81780 -12.62222 -11.63254 -11.46736 -11.34201 -11.07757 -11.03744 -10.99514 -10.80492 -10.57320 -10.36285 -10.20299 -10.11163 -9.80862 -9.24166 -9.03434 -8.87043 -8.30227 -8.06485 -7.08946 -5.83302 -3.13670 0.94054 1.82741 1.86314 1.91288 2.34202 3.12829 3.30506 3.41425 3.45892 3.46733 3.67622 4.25427 4.55194 4.57104 4.65273 4.81396 4.96073 5.00262 5.08774 5.19065 5.36286 5.38651 5.44747 5.48078 5.51338 5.54276 5.61215 5.78154 5.86837 5.92255 6.01660 6.12012 6.21041 6.26582 6.37569 6.51888 6.63740 6.76578 6.91889 6.99781 7.22983 7.25565 7.50915 7.63559 7.67139 8.25051 8.32846 9.44864 9.95741 10.31803 11.38444 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011028 B = 0.003541 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.409273 B = 7905.708990 C = 8989.385196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.193 3.807 3 N -0.460 5.460 4 C -0.065 4.065 5 C 0.601 3.399 6 O -0.536 6.536 7 N -0.692 5.692 8 C 0.136 3.864 9 H 0.110 0.890 10 C -0.086 4.086 11 C -0.096 4.096 12 C -0.114 4.114 13 C -0.132 4.132 14 C -0.128 4.128 15 C -0.089 4.089 16 C -0.092 4.092 17 C 0.208 3.792 18 H 0.063 0.937 19 N -0.703 5.703 20 C -0.244 4.244 21 H 0.072 0.928 22 C -0.006 4.006 23 N -0.927 5.927 24 Si 0.909 3.091 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.009 3.991 29 O -0.199 6.199 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.409 0.591 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.388 0.612 41 H 0.258 0.742 42 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.654 -13.049 9.167 22.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.016 4.016 3 N -0.191 5.191 4 C -0.185 4.185 5 C 0.385 3.615 6 O -0.413 6.413 7 N -0.342 5.342 8 C 0.030 3.970 9 H 0.128 0.872 10 C -0.124 4.124 11 C -0.097 4.097 12 C -0.133 4.133 13 C -0.150 4.150 14 C -0.146 4.146 15 C -0.108 4.108 16 C -0.096 4.096 17 C 0.097 3.903 18 H 0.081 0.919 19 N -0.342 5.342 20 C -0.375 4.375 21 H 0.090 0.910 22 C -0.203 4.203 23 N -0.574 5.574 24 Si 0.739 3.261 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.211 1.211 28 C -0.065 4.065 29 O -0.085 6.085 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.122 0.878 33 H 0.244 0.756 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.223 0.777 41 H 0.068 0.932 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -15.091 -12.630 8.984 21.632 hybrid contribution 0.224 0.444 -0.452 0.671 sum -14.867 -12.186 8.532 21.032 Atomic orbital electron populations 1.20312 0.80901 1.05335 1.04974 1.26341 0.96675 0.78326 1.00228 1.70788 1.00800 1.29928 1.17534 1.21867 0.92124 0.93093 1.11448 1.16717 0.86095 0.81980 0.76670 1.90837 1.24138 1.75371 1.51000 1.45688 1.10703 1.04927 1.72853 1.21997 0.87914 0.90569 0.96487 0.87225 1.21401 1.00382 0.94679 0.95909 1.20512 0.98769 0.97046 0.93367 1.20469 1.00478 0.96527 0.95788 1.20838 1.00116 0.95834 0.98221 1.20959 1.01220 0.99656 0.92751 1.20609 0.98459 0.95030 0.96717 1.21699 0.95068 0.95502 0.97291 1.19853 0.92897 0.87637 0.89926 0.91904 1.42244 1.03335 1.40378 1.48286 1.19141 0.93099 1.09254 1.16028 0.91005 1.24763 0.95193 0.99864 1.00496 1.69655 0.97668 1.44066 1.46038 0.86251 0.76750 0.82101 0.80969 1.21132 1.21613 1.21109 1.25279 0.84729 0.95726 1.00777 1.84379 1.16776 1.37943 1.69425 0.88670 0.89212 0.87832 0.75592 0.89237 0.91079 0.87211 0.86832 0.86725 0.86550 0.77725 0.93240 0.75261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.28 10.51 36.00 0.38 0.10 16 2 C 0.19 1.88 8.30 -13.08 -0.11 1.77 16 3 N -0.46 -5.78 11.06 -7.65 -0.08 -5.86 16 4 C -0.07 -0.88 6.99 -83.02 -0.58 -1.46 16 5 C 0.60 9.53 7.81 -12.52 -0.10 9.43 16 6 O -0.54 -9.76 16.63 5.26 0.09 -9.67 16 7 N -0.69 -10.87 5.14 -53.37 -0.27 -11.14 16 8 C 0.14 2.40 2.95 -66.37 -0.20 2.21 16 9 H 0.11 2.15 7.63 -51.93 -0.40 1.76 16 10 C -0.09 -1.44 6.47 -26.85 -0.17 -1.61 16 11 C -0.10 -1.69 6.14 -104.21 -0.64 -2.32 16 12 C -0.11 -1.81 10.04 -39.53 -0.40 -2.21 16 13 C -0.13 -1.97 10.05 -39.63 -0.40 -2.37 16 14 C -0.13 -2.02 10.05 -39.63 -0.40 -2.42 16 15 C -0.09 -1.62 10.04 -39.54 -0.40 -2.02 16 16 C -0.09 -1.74 5.76 -104.21 -0.60 -2.34 16 17 C 0.21 4.15 3.11 -67.90 -0.21 3.94 16 18 H 0.06 1.25 8.02 -51.93 -0.42 0.84 16 19 N -0.70 -17.30 5.16 -53.39 -0.28 -17.58 16 20 C -0.24 -6.61 9.96 -15.06 -0.15 -6.76 16 21 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 22 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 23 N -0.93 -27.65 13.06 55.49 0.72 -26.93 16 24 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 C 0.01 0.09 11.95 29.96 0.36 0.45 16 29 O -0.20 -1.98 10.73 6.52 0.07 -1.91 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.41 6.01 8.31 -40.82 -0.34 5.67 16 34 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 35 H 0.07 1.12 8.09 -51.93 -0.42 0.70 16 36 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 37 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 38 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 39 H 0.12 2.08 8.06 -52.48 -0.42 1.66 16 40 H 0.39 10.21 7.79 -40.82 -0.32 9.90 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.23 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 367.11 15.07 5.53 5.53 Total: -1.00 -33.23 367.11 -8.19 -41.42 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -5.24 Total: 14.92 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -3.71 Total: -5.89 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: 0.09 Total: -61.51 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.16 Total: -11.58 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.23 -8.19 -41.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960258069.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.265 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds